Your message dated Mon, 24 May 2010 11:44:22 +0000
with message-id <e1ogw50-0001n0...@ries.debian.org>
and subject line Bug#582509: fixed in rpy2 2.1.2-1
has caused the Debian Bug report #582509,
regarding rpy2: debian/rules doesn't trap errors inside for loops
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
582509: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=582509
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python-rpy2
Version: 2.1.1-1
Severity: normal
There are no files in
/usr/lib/python2.5/site-packages
because compilation fails, as checked by
apt-get -b source python-rpy2
with following output
....
for python in python2.5 python2.6; \
do $python setup.py install --root=debian/python-rpy2; \
done
running install
running build
running build_py
running build_ext
building 'rpy2.rinterface.rinterface' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
-Wstrict-prototypes -g -O2 -fPIC -DR_INTERFACE_PTRS=1
-DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1
-Irpy/rinterface -I/usr/include/python2.5 -I/usr/share/R/include -c
rpy/rinterface/rinterface.c -o
build/temp.linux-x86_64-2.5/rpy/rinterface/rinterface.o
-L/usr/lib64/R/lib -lR -llapack -lblas
In file included from /usr/include/python2.5/Python.h:8,
from rpy/rinterface/rinterface.c:55:
/usr/include/python2.5/pyconfig.h:970:1: warning: "_POSIX_C_SOURCE"
redefined
In file included from /usr/include/signal.h:29,
from rpy/rinterface/rinterface.c:51:
/usr/include/features.h:210:1: warning: this is the location of the
previous definition
In file included from rpy/rinterface/rinterface.c:74:
/usr/share/R/include/R_ext/Rdynload.h:26: warning: function declaration
isn’t a prototype
In file included from rpy/rinterface/rinterface.c:100:
rpy/rinterface/na_values.c: In function ‘NAInteger_tp_new’:
rpy/rinterface/na_values.c:179: warning: implicit declaration of
function ‘Py_SIZE’
rpy/rinterface/na_values.c:188: error: lvalue required as left operand
of assignment
In file included from rpy/rinterface/rinterface.c:105:
rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
rpy/rinterface/sequence.c:447: warning: unused variable ‘sexp_item’
rpy/rinterface/sequence.c:447: warning: unused variable ‘tmp’
rpy/rinterface/sequence.c:446: warning: unused variable ‘vs’
rpy/rinterface/sequence.c:386: warning: unused variable ‘self_typeof’
rpy/rinterface/rinterface.c: In function ‘EmbeddedR_end’:
rpy/rinterface/rinterface.c:1112: warning: unused variable ‘str’
error: command 'gcc' failed with exit status 1
....
In the following python2.6 modules get compiled without problem into
/usr/lib/python2.6/dist-packages/rpy2
Thanks
Erwin
-- System Information:
Debian Release: squeeze/sid
APT prefers testing
APT policy: (900, 'testing'), (300, 'stable'), (100, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-3-amd64 (SMP w/2 CPU cores)
Locale: LANG=de_AT.UTF-8, LC_CTYPE=de_AT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages python-rpy2 depends on:
ii libc6 2.10.2-6 Embedded GNU C Library: Shared lib
ii python 2.5.4-9 An interactive high-level object-o
ii python-central 0.6.14+nmu2 register and build utility for Pyt
ii python-fann [python] 20091015-1 Package created with checkinstall
ii python-numpy 1:1.3.0-3+b1 Numerical Python adds a fast array
ii r-base-core 2.11.0-1 GNU R core of statistical computat
python-rpy2 recommends no packages.
Versions of packages python-rpy2 suggests:
pn python-rpy-docs <none> (no description available)
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: rpy2
Source-Version: 2.1.2-1
We believe that the bug you reported is fixed in the latest version of
rpy2, which is due to be installed in the Debian FTP archive:
python-rpy2_2.1.2-1_i386.deb
to main/r/rpy2/python-rpy2_2.1.2-1_i386.deb
rpy2_2.1.2-1.diff.gz
to main/r/rpy2/rpy2_2.1.2-1.diff.gz
rpy2_2.1.2-1.dsc
to main/r/rpy2/rpy2_2.1.2-1.dsc
rpy2_2.1.2.orig.tar.gz
to main/r/rpy2/rpy2_2.1.2.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 582...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated rpy2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 22 May 2010 10:40:55 -0500
Source: rpy2
Binary: python-rpy2
Architecture: source i386
Version: 2.1.2-1
Distribution: unstable
Urgency: low
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Description:
python-rpy2 - Python interface to the GNU R language and environment (version 2
Closes: 582505 582509
Changes:
rpy2 (2.1.2-1) unstable; urgency=low
.
* New upstream release
.
* debian/rules: For the time being, and on the recommendation from the
upstream author, we are suspending python2.5 builds. rpy2 is under
active development, but upstream does no longer look at python 2.4 and
2.5 build issues. If this of importance to users, help in debugging
the build issues would be appreciated upstream. (Closes: #582505)
.
* debian/rules: Add 'set -e;' before 'for python...' (Closes: #582509)
Checksums-Sha1:
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9acb4d064f893a559b3cb94b8b00e34ba6d297c2 127657 rpy2_2.1.2.orig.tar.gz
c5fa8ecba59a4258faa56a9d282eebab574f0b5a 12031 rpy2_2.1.2-1.diff.gz
c4004c952074df8685fc8f890fa30c5ed8866040 113178 python-rpy2_2.1.2-1_i386.deb
Checksums-Sha256:
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python-rpy2_2.1.2-1_i386.deb
Files:
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b0d74cedcf05f777bf91f0f08aad015a 127657 python optional rpy2_2.1.2.orig.tar.gz
1d895e426102d8f033ec980b3d65c9bc 12031 python optional rpy2_2.1.2-1.diff.gz
2fb8fbc77457bfbea263569755b00ffc 113178 python optional
python-rpy2_2.1.2-1_i386.deb
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--- End Message ---