Re: 64-bit time_t transition in progressL

[Alastair McKinstry]

On 18/02/2024 17:52, Alastair McKinstry wrote:

Hi Steve

On 16/02/2024 08:11, Steve Langasek wrote:

Hi Alastair,

There are in fact three related MPI transitions, as mpich-4.2.0 is 
essentially a mini-transition ;


openmpi 4 -> 5 drops 32-bit support, and has a Fortran API change too 
in close inspection: it moves MPI_Integer type from 4 to 8 bytes.


Apologies , I need to correct this; default MPI_Integer does not change 
from 4 bytes on openmpi5.


I have yet to upload an mpich transition bug to request transition.


I'm not sure how to do this; the API has changed, but not the ABI? the 
SO interface hasn't changed, so how do I write the appropriate BEN code?




Regards

Alastair


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Re: 64-bit time_t transition in progressL

[Alastair McKinstry]

Hi Steve

On 16/02/2024 08:11, Steve Langasek wrote:

Hi Alastair,

On Sat, Feb 03, 2024 at 08:11:21AM +, Alastair McKinstry wrote:

Since the time transition is going to require an openmpi transition, I
suggest that the mpi-defaults transition happen simultaneously;
ie mpi-defaults to move 32-bit builds to mpich; openmpi 4.1.6-6 with t64
libs builds against 64-bit libs only.

If I'm interpreting your message correctly, I believe these are relatively
orthogonal: you can change mpi-defaults whenever you wish, the packages that
depend on libopenmpi3 would still need binNMUing to make them depend on
libopenmpi3t64 on armhf.  If you arrange it so that at the same time
mpi-defaults changes, so that any armhf packages build-depending on
mpi-default-dev get rebuilt to depend on libmpich12 instead of either
libopermpi3 or libopenmpi3t64, that's fine and would save a round of binNMUs
of those same packages later; but that is not a transition that is going to
require the same degree of tight coordination wrt unstable uploads and
testing migration so I don't think we should block the t64 unstable uploads
on an mpi-defaults change.

(If you upload mpi-defaults to unstable *first* and get the binNMUs done
before the t64 transition lands, that's great and just saves us on the
number of binNMUs we will need to schedule.)


There are in fact three related MPI transitions, as mpich-4.2.0 is 
essentially a mini-transition ;


it appears mpich-4.1.2 -> 4.2.0 as a trivial change in Fortran API 
(renaming a parameter ierr->ierror) the scope of breakage is unknown at 
this time.


openmpi 4 -> 5 drops 32-bit support, and has a Fortran API change too in 
close inspection: it moves MPI_Integer type from 4 to 8 bytes.


To my understanding there are likely to be libmpich12 -> libmpich12t64 
transitions but not libopenmpi3t64 , as there will be no 32-bit openmpi 
packages post openmpi transition.


mpi-default can then be done before the t64 binNMUs as you point out , 
and there need not be libopenmpi3t64 changes.


I have yet to upload an mpich transition bug to request transition.


Note there is a 5.0.1-1 package in experimental for openmpi that is not
ready for primetime; for the t64 transition use 4.1.6 not 5.0.1.

Of course.  binary NEW changes are being staged in experimental where
possible, but we will not be pulling experimental versions into unstable as
part of this.


Regards

Alastair

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Bug#1063532: ITP: ford -- Fortran Documentation tool

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: ford
  Version : 7.0.5
  Upstream Contact: Christopher MacMackin 
* URL : https://github.com/Fortran-FOSS-Programmers/ford
* License : GPL
  Programming Lang: Python
  Description : Fortran Documentation tool

The goal of FORD is to be able to reliably produce documentation for modern
Fortran software which is informative and nice to look at. The documentation
should be easy to write and non-obtrusive within the code. While it will never
be as feature-rich as Doxygen, hopefully FORD will be able to provide a good
alternative for documenting Fortran projects.

Ford is already used (if present) by several projects packaged in Debian.

I intend to manage it in Salsa; perhaps in Debian-Science team.

Bug#1063521: ITP: pymbolic -- Easy Expression Trees and Term Rewriting library

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-pyt...@lists.debian.org

* Package name: pymbolic
  Version : 2022.2
  Upstream Contact: Andreas Klöckner 
* URL : https://github.com/inducer/pymbolic
* License : MIT/X
  Programming Lang: Python
  Description : Easy Expression Trees and Term Rewriting library

I am packaging this as 

Pymbolic is a small expression tree and symbolic manipulation library. Two
things set it apart from other libraries of its kind:

* Users can easily write their own symbolic operations, simply by deriving
  from the builtin visitor classes.
* Users can easily add their own symbolic entities to do calculations
  with.

Pymbolic currently understands regular arithmetic expressions, derivatives,
sparse polynomials, fractions, term substitution, expansion. It automatically
performs constant folding, and it can compile its expressions into Python
bytecode for fast(er) execution.

It is not expected to be a replacement for Sympy, which is more complex.

Bug#1063520: ITP: codetiming -- A Timer package for Python code

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: codetiming
  Version : 1.4.0
  Upstream Contact: David Beazley
* URL : https://pypi.python.org/pypi/codetiming
* License : MIT
  Programming Lang: Python
  Description : A Timer package for Python code

This is a dependency of loki-ecmwf, already submitted.
It is a simple timer class for Python.

Re: 64-bit time_t transition in progress

[Alastair McKinstry]

Hi,

Since the time transition is going to require an openmpi transition, I 
suggest that the mpi-defaults transition happen simultaneously;


ie mpi-defaults to move 32-bit builds to mpich; openmpi 4.1.6-6 with t64 
libs builds against 64-bit libs only.


Note there is a 5.0.1-1 package in experimental for openmpi that is not 
ready for primetime; for the t64 transition use 4.1.6 not 5.0.1.


Thanks

Alastair

On 02/02/2024 16:43, Steve Langasek wrote:

Hello,

debian-devel-announce wouldn't let me attach the file, but for those on
debian-devel at least, you can find the dd-list of to-be-NMUed source
packages attached.

Thanks,


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Bug#1061367: ITP: loki-ecmwf -- Source-to-source code translator for Fortran

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: loki-ecmwf
  Version : 0.1.6
  Upstream Contact: Michael Lange (michael.la...@ecmwf.int)
* URL : https://github.com/ecmwf-ifs/loki
* License : Apache-2
  Programming Lang: Python
  Description : Source-to-source code translator for Fortran

Loki is an experimental tool to explore the possible use of
source-to-source translation for ECMWF's Integrated Forecasting System (IFS) and
associated Fortran software packages.

Loki is based on compiler technology (visitor patterns and ASTs) and aims to
provide an abstract, language-agnostic representation of a kernel, as well as a
programmable (pythonic) interface that allows developers to experiment with
different kernel implementations and optimizations.  The aim is to allow changes
to programming models and coding styles to be encoded and automated instead of
hand-applying them, enabling advanced experimentation with large kernels as well
as bulk processing of large numbers of source files to evaluate different kernel
implementations and programming models.

This software is now in use beyond ECMWF, and I intend to work
and develop it with other Fortran environments in Debian.
I intend to maintain it within Debian Science team as part of the
Meteorology stack.

As Loki is a pre-existing name in Debian, I intend to follow
convention and rename the package loki-ecmwf.

Re: Deprecation of /etc/alternatives? (Re: Reaction to potential PGP schism)

[Alastair McKinstry]

On 23/12/2023 14:34, Gioele Barabucci wrote:

On 22/12/23 00:40, Daniel Kahn Gillmor wrote:

If you're asking about using /etc/alternatives or something like that to
provide some sort of generic swapping capability, or a dpkg Provides:,
such that /usr/bin/gpg on some systems would point toward the
"chameleon", i would want to see some significant archive-wide testing
done before we even consider inflicting that on our normal users.


While we are on the topic of alternatives, I hope to see the 
maintscript-based /etc/alternatives paradigm deprecated in favor of 
the package-based X-is-X paradigm introduced by `python-is-python3`.


They have different use-cases.  alternatives allows for 
co-installability (and importantly - co-"buildability" with 
dependencies). the X-is-X guarantees essentially the opposite.


This becomes key if we have two different approaches desired or needed 
simultaneously: eg the adios parallel I/O library builds for both 
openmpi and mpich variants of MPI; different variants preferred for 
different architectures.


Regards

Alastair McKinstry




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Bug#1057266: ITP: lfortran -- Fortran compiler

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: lfortran
  Version : 0.29.0
  Upstream Contact: @lfortranorg
* URL : https://www.lfortran.org/
* License : Apache
  Programming Lang: C++
  Description : Interactive Fortran compiler

LFortran is a modern open-source (BSD licensed) interactive Fortran compiler 
built on top of LLVM. It can execute user’s code interactively to allow 
exploratory work (much like Python, MATLAB or Julia) as well as compile to 
binaries with the goal to run user’s code on modern architectures such as 
multi-core CPUs and GPUs.

This is currently the most mature Fortran compiler on LLVM.

default buildflags for flang

[Alastair McKinstry]

Hi,

I'm looking at enabling Fortran builds using the flang compiler (flang 
in the llvm 16 looks broken, flang-17 works).


It accepts different flags that gfortran.  Can we add a set of flags 
FCFLAGS_GFORTRAN, FCFLAGS_FLANG, etc to the default flags (with gfortran 
remaining the default).


Regards

Alastair


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Re: OpenMPI / MPI transition

[Alastair McKinstry]

My understanding is that MPICH has been typically the reference 
implementation, higher quality but less performant, particularly with 
the range of fabrics. Certainly I've seen mostly OpenMPI but not MPICH 
on various HPC machines. People would use either OpenMPI or a vendors 
MPI (which may be forked MPICH with added network hardware support).


I'd really like to hear from upstream users whether they are still 
encountering OpenMPI issues.


Personally I favour splitting, using MPICH on 32-bit archs to flush 
out bugs, and doing so early in the dev cycle (now) so there is time 
to change if necessary.


Thank you both for your comments.

I don't think as the Release Team we have a preference one way or the 
other. We'll let you pick the approach that you consider better. 
Obviously the freeze is still a long ways off, so if something comes 
up it can be changed later.


Cheers,
Emilio

Ok, as a concrete proposal: I propose to leave OpenMPI as the default 
MPI for 64-bit archs, move 32-bit archs to MPICH.


I will update mpi-defaults in one week, in order to give time for 
further responses on the matter.


I'm not sure how to write a BEN file for transition tracking when the 
SOVERSION doesn't change (as in this case with OpenMPI). Help appreciated.


regards

Alastair


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Re: OpenMPI / MPI transition

[Alastair McKinstry]

On 23/11/2023 12:44, Drew Parsons wrote:

On 2023-11-23 12:13, Emilio Pozuelo Monfort wrote:

Hi,

On 23/11/2023 09:36, Alastair McKinstry wrote:

Hi,

OpenMPI has a new upstream release 5.0.0. It is in experimental now; 
the SOVERSION for libraries remains 40.X (minor version increment), 
there is  an SOVERSION increment for private libraries only so in 
theory this is not an ABI transition. However 5.0.0 drops 32-bit 
system support.


The default MPI implementation for each architecture is set in 
mpi-defaults; this allows a per-arch MPI choice; in practice we 
currently use OpenMPI for all archs. The other choice is MPICH.


So the question becomes: do we switch MPI for just 32-bit archs, or 
all? What are the release teams opinion on this transition?


Having the same implementation across the board makes things easier
for testing purposes et al, however I don't see that as a blocker for
not having separate implementations.


True, in one sense it's simpler to have the same default MPI.  But 
we've set up our package infrastructure so that in principle it should 
not matter.  One architecture does not (or should not) depend on 
another, so it shouldn't break packages just because we'd have 
different MPI implementations on different architectures.  On the 
contrary, "actively" using both implementations could lead to more 
robust packages overall as MPI bugs get fixed against both 
implementations.



What are your thoughts on it? Is there a strong reason why we should
stick with OpenMPI for 64bit releases? Or from a different POV, what
are the risks of changing the implementation? Introducing a different
set of bugs?


One point to consider is that upstream developers of several of our 
numerical libraries have time and again suggested to us that we use 
mpich instead of openmpi, even before this v5 shift. They perceive 
(rightly or wrongly) that mpich is more robust, more reliable.


It would be useful to know whether that changes with v5, or whether 
their complaints are historical and openmpi has already fixed the bugs 
that concerned them. mpich has had its own share of bugs over the 
years. My memory told me RMA support was an issue in openmpi, but when 
I checked my facts, it was mpich that had to be fixed 
(https://github.com/pmodels/mpich/issues/6110)


Drew

My understanding is that MPICH has been typically the reference 
implementation, higher quality but less performant, particularly with 
the range of fabrics. Certainly I've seen mostly OpenMPI but not MPICH 
on various HPC machines. People would use either OpenMPI or a vendors 
MPI (which may be forked MPICH with added network hardware support).


I'd really like to hear from upstream users whether they are still 
encountering OpenMPI issues.


Personally I favour splitting, using MPICH on 32-bit archs to flush out 
bugs, and doing so early in the dev cycle (now) so there is time to 
change if necessary.


Alastair


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OpenMPI / MPI transition

[Alastair McKinstry]

Hi,

OpenMPI has a new upstream release 5.0.0. It is in experimental now; the 
SOVERSION for libraries remains 40.X (minor version increment), there 
is  an SOVERSION increment for private libraries only so in theory this 
is not an ABI transition. However 5.0.0 drops 32-bit system support.


The default MPI implementation for each architecture is set in 
mpi-defaults; this allows a per-arch MPI choice; in practice we 
currently use OpenMPI for all archs. The other choice is MPICH.


So the question becomes: do we switch MPI for just 32-bit archs, or all? 
What are the release teams opinion on this transition?



regards

Alastair

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Re: Proposed MBF - removal of pcre3 by Bookworm

[Alastair McKinstry]

On 01/07/2023 14:44, Michael Stone wrote:

On Thu, Jun 29, 2023 at 08:55:11PM +0100, Matthew Vernon wrote:
Bookworm is now out; I will shortly be increasing the severity of the 
outstanding bugs to RC, with the intention being to remove src:pcre3 
from Debian before the trixie release.


You don't think that marking packages for removal two weeks after the 
bug is filed is a little much?


There's significant work creating and testing patches for this 
transition. Marking removal is too much.



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ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Re: OpenMPI 5.0 to be 32-bit only ?

[Alastair McKinstry]

On 15/02/2023 00:16, Steve Langasek wrote:

On Mon, Feb 13, 2023 at 02:18:06PM +, Alastair McKinstry wrote:


On 13/02/2023 12:51, Adrian Bunk wrote:
There are a significant number of science libraries dependent on MPI.
We would need to do MPI-free builds of these libraries; I'm not sure how
much breaks as we do.

Would we, though?  Or should we remove the 32-bit builds of those libraries
as well?

I think it's accurate that no one is using those scientific libraries in
production (which is, basically: doing lots of matrix math) on 32-bit
architectures, because all of the vector instructions you want for such work
are only available on 64-bit CPUs.

So the only application of those 32-bit binaries, really, is either a)
letting users of those 32-bit archs learn the tools on the hardware they
have available, so they can use them to advantage later on fit-for-purpose
hardware; or b) using them to build other software in Debian.

Is either of those a compelling reason to keep building those software
stacks for 32-bit?  I would argue not.  But neither is it obvious at what
point it's worth the effort to remove them, since this requires tracking the
reverse-dependency tree, working out which of those reverse-dependencies are
*not* scientific applications that should drop the build-dependency rather
than being removed, and so forth.

So it's a tradeoff between the maintenance work of keeping mpi working on
32-bit, and the one-time work of removing it.


Thats a more drastic solution, but also realistic. There are a number of 
scientific libraries and packages that will never realistically be used;


they're only being built and tested for code quality checking, but add a 
technical maintenance cost.


The counterpoint is if someone does a high-core-count 32-bit arch for 
HPC; x32 could (have been) such an architecture, but its development 
looks stalled.


regards

Alastair


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Re: OpenMPI 5.0 to be 32-bit only ?

[Alastair McKinstry]

On 13/02/2023 12:51, Adrian Bunk wrote:

On Mon, Feb 13, 2023 at 10:59:18AM +, Alastair McKinstry wrote:

...

The case we should make is that "no one cares about 32-bit builds" from
the starting post in the GitHub issue is not true for Debian.
We do care that it *builds*, even if it might not be actually used.

I've been making this point, mostly in the context of avoiding a future
where no MPI is available on 32-bit
(and by implication, essentially forking Debian into a toy 32-bit world and
a properly-supported 64-bit one).

I don't see what important functionality for 32-bit today would be
missing without MPI, it is just more work and breakages to have packages
configured differently on different platforms to continue providing the
functionality that is still important.


There are a significant number of science libraries dependent on MPI.

We would need to do MPI-free builds of these libraries; I'm not sure how 
much breaks as we do.



...
The point of going  64-bit only is to clean up data structures and remove
technical debt: Hence 5.x will start a cleanup and removal of 32-bit code.

The next point release may work on 32-bit by just bypassing the compilation
flag; ongoing support starts meaning more invasive patches need to be
carried by us.

This sounds as if the lesser evil for us will be to configure packages
differently when one or all MPI implementations are going away on 32-bit.

For example:
ffmpeg -> codec2 -> octave -> sundials -> sundials does not build with MPICH
One of these four arrows must be broken.
That's work and not fun work, but likely the lesser evil.


Yes.

I suspect that the real problem may be the support of underlying 
libraries shared by both implementations,


eg PMIx.  If we can keep a version of MPI that works on generic hardware 
(TCP/IP) we may be ok.



cu
Adrian


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Re: OpenMPI 5.0 to be 32-bit only ?

[Alastair McKinstry]

Currently I'm favouring accepting a move to 64-bit OpenMPI as a fait
accompli as part of code cleanups for 5.X (post Bookworm), and Debian moving
to MPICH on at least 32-bit archs - I'd favour OpenMPI on 64-bit archs for
better incoming-code-and-compatability support.

I'd like to hear the case otherwise.

The case we should make is that "no one cares about 32-bit builds" from
the starting post in the GitHub issue is not true for Debian.
We do care that it *builds*, even if it might not be actually used.
I've been making this point, mostly in the context of avoiding a future 
where no MPI is available on 32-bit
(and by implication, essentially forking Debian into a toy 32-bit world 
and a properly-supported 64-bit one).

[1] was about the benefits of switching the two architectures that were
using MPICH to OpenMPI two years ago. The mentioned "makes packages like
octave build" is due to sundials build depending on mpi-default-dev but
requiring ompi-c.pc [2].

m68k and sh4 are building with nocheck, whether or not there might be
additional/different test failures in packages with MPICH is unknown.

Having different MPI implementations on different architectures again
would be painful for us, especially if it would be on release architectures.

If it would be architecturally hard for upstream to continue supporting
32-bit then that's how it is, otherwise the current status quo of 32-bit
OpenMPI is good enough for us and a possible compromise might be if
upstream says "32-bit patches are welcome" and requires an
   --i-know-that-32-bit-support-is-unsupported-and-might-be-broken
configure flag when building for 32-bit archs.


Such a flag is possible and being debated.

The challenge is key dependencies will move on to being 64-bit only, 
too: PMIx, etc.


The point of going  64-bit only is to clean up data structures and 
remove technical debt: Hence 5.x will start a cleanup and removal of 
32-bit code.


The next point release may work on 32-bit by just bypassing the 
compilation flag; ongoing support starts meaning more invasive patches 
need to be carried by us.



Best regards
Alastair

cu
Adrian

[1]https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853029#18
[2]https://buildd.debian.org/status/fetch.php?pkg=sundials=m68k=5.7.0%2Bdfsg-1~exp1=1626976038=0


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Re: Security (Was: OpenMPI 5.0 to be 32-bit only ?)

[Alastair McKinstry]

Hi,

The push-back from upstream is that they're unconvinced anyone is 
actually using i386 for MPI.


For example, MPI is configured to use PMIx but its thought that doesn't 
work on 32-bit, but no bugs have been reported.


Either we increase our 32-bit testing regime, or realistically consider 
it marginal and dying.


Currently I'm favouring accepting a move to 64-bit OpenMPI as a fait 
accompli as part of code cleanups for 5.X (post Bookworm), and Debian 
moving to MPICH on at least 32-bit archs - I'd favour OpenMPI on 64-bit 
archs for better incoming-code-and-compatability support.


I'd like to hear the case otherwise.


Best regards
Alastair


On 07/02/2023 20:22, Kingsley G. Morse Jr. wrote:

Hi Alastair,

Thanks for relaying OpenMPI's upstream
maintainer's interest in our opinions on
maintaining 32 bit support.

My humble comments are

1.) 32 bit hardware can be more secure because
 it's so old it predates back doors known as

 Intel's Management Engine[1] and

 AMD's Platform Secure Processor[2]

2.) and I'm OK with reporting bugs.

Thanks again,
Kingsley


[1] 
https://en.wikipedia.org/wiki/Intel_Management_Engine#Security_vulnerabilities

[2] 
https://en.wikipedia.org/wiki/AMD_Platform_Security_Processor#Reported_vulnerabilities




On 02/07/2023 09:54, Alastair McKinstry wrote:

Hi

I've been pinged by the upstream maintainer of OpenMPI    Jefff Squyres as
to our opinions on maintaining 32-bit support.

See a  thread here: https://github.com/open-mpi/ompi/pull/11282

Until now I've asked for OMPI to hold off going to 64-bit only; saying we
can help with the maintenance burden with our testing infrastructure.

But we're not well suited to run multi-node test jobs.

If 32-bit support is dropped in OMPI we can switch to MPICH as the default
on those archs instead, but the core problem remains: how much can we
support and test on 32-bit?

(Note:  We're at OpenMPI 4.1.4 now for Bookworm; no change planned)

Comments please,


Alastair McKinstry

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Re: OpenMPI 5.0 to be 32-bit only ?

[Alastair McKinstry]

On 07/02/2023 10:27, Drew Parsons wrote:

On 2023-02-07 10:54, Alastair McKinstry wrote:

Hi

I've been pinged by the upstream maintainer of OpenMPI    Jefff
Squyres as to our opinions on maintaining 32-bit support.

See a  thread here: https://github.com/open-mpi/ompi/pull/11282





If 32-bit support is dropped in OMPI we can switch to MPICH as the
default on those archs instead, but the core problem remains: how much
can we support and test on 32-bit?


Switching to mpich would in any case be supported by a lot of our 
upstream developers.  In various different projects we hear them 
recommending mpich and occasionally expressing discontent with bugs in 
openmpi.


I've heard this, but at the same time heard that one of the benefits of 
OpenMPI is the larger test suite and infrastructure, which is puzzling.


My experience is that OpenMPI is faster on release of support for new 
systems such as PMIx, UCX; this shakes out bugs there first before MPICH;


also MPICH has at times been harder to build, looking like many 
configurations are not tested as well.


Can you point to the upstream bugs?


To make it simpler for ourselves, we could also consider just 
switching to mpich altogether as default.  Are there reasons to prefer 
64-bit OMPI over MPICH?


Drew


Alastair

--
Alastair McKinstry,
GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

OpenMPI 5.0 to be 32-bit only ?

[Alastair McKinstry]

Hi

I've been pinged by the upstream maintainer of OpenMPI    Jefff Squyres 
as to our opinions on maintaining 32-bit support.


See a  thread here: https://github.com/open-mpi/ompi/pull/11282

Until now I've asked for OMPI to hold off going to 64-bit only; saying 
we can help with the maintenance burden with our testing infrastructure.


But we're not well suited to run multi-node test jobs.

If 32-bit support is dropped in OMPI we can switch to MPICH as the 
default on those archs instead, but the core problem remains: how much 
can we support and test on 32-bit?


(Note:  We're at OpenMPI 4.1.4 now for Bookworm; no change planned)

Comments please,


Alastair McKinstry

--
Alastair McKinstry,
GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
e: mckins...@debian.org, im: @sceal.ie:mckinstry

Re: looking for debian friendly web app technology

[Alastair McKinstry]

Hi,

Is Qt6-base  not in testing, for bookworm? I've an app (metview) that I 
switched over Qt5->Qt6, should I move it back?


regards

Alastair

On 13/12/2022 20:27, Andreas Josef Heil wrote:

Well qt5 is fine too. I don't need fancy features. I will make a kde app.

On 13.12.22 05:22, Imre Nagy wrote:
The downside of these things, that current Debian does not seem to 
include Qt6 at all and I have no idea when it can go into the 
mainstream Debian, while there are a lot of project could be waiting 
for it. (Even my one is still pending for Debian). Qt6 for Debian is 
still in unstable/experimental state, which drives the developers 
like me to find other alternatives instead of Debian or for Debian.


Best regards,
Imre

2022. 12. 13. 1:48 keltezéssel, Sam Hartman írta:

I wrote too early sry. A desktop app is also possible. I will use qt.



--
Alastair McKinstry,
GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1024552: ITP: ectrans -- Spherical Harmonics Transforms library

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: ectrans
  Version : 1.1.0
  Upstream Author : ECMWF 
* URL : https://github.com/ecmwf-ifs/trans
* License : Apache
  Programming Lang: C,C++, Fortran
  Description : Spherical Harmonics Transforms library

 ecTrans is the global spherical Harmonics transforms library,
 extracted from the IFS weather model from ECMWF.
 It uses a hybrid of MPI and OpenMP parallelisation strategies.
 The package contains both single- and double precision Fortran libraries 
(trans_sp, trans_dp),
 as well as a C interface to the double-precision version (transi_dp)
 ECMWF is the European Centre for Medium-Range Weather Forecasts.

 ecTrans is a new dependency of the ECMWF atlas-ecmwf library already
 present in Debian, as ECMWF open-source their stack.

Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: fiat
  Version : 1.0.0
  Upstream Author : ECMWF 
* URL : https://github.com/ecmwf-ifs/fiat
* License : Apache
  Programming Lang: C, Fortran
  Description : Fortran IFS and Arpege Toolkit

 FIAT is a collection of selected Fortran utility libraries, extracted from
 the IFS/Arpege model used at ECMWF.
 It provides:
   drhook : tracing
   gstats : timing
   parkind : choose precision
   mpl : MPI communication
   mpi_serial: MPI dummy symbols compiled into static library other various 
routines
 .
 ECMWF is the European Centre for Medium-Range Weather Forecasts.

 FIAT is a new dependency of the atlas-ecmwf library already in Debian, as ECMWF
 is open-sourcing its stack.
 

Re: how about matrix channel

[Alastair McKinstry]

On 19/07/2022 21:04, Wookey wrote:

On 2022-07-19 21:01 +0200, Bartosz Fenski wrote:

Hey folks.

Anyone interested in switching to some more modern channels of
communication?

I'm tired of keeping VPS just to have IRC client and to be honest I think
modern solutions like Telegram are simply easier and much more practical
nowadays.

Matrix please. It's free software all the way through. We can run our
own server. Not-mobile-phones are 1st class clients.

I'm increasingly using it to replace IRC (with bridges if
appropriate). I'd be happy to see debian move channels from IRC to
Matrix. I'm not happy about moving them to Telegram or Signal, which
are obviously a great improvement on Whatsapp but still only
somewhat-free. Telegram has non-free back-end. Signal is presumably OK
if you run your own back-end, but you try to use the centralised one
then you can't build your own client (or at least it's made extremely
difficult). Signal requires an active mobile phone number to use (not
sure if telegram is the same).

I'm fine with IRC too. It's not broken, but unless you have your own
permanent IRC client instance somewhere it's not great. Having the
store and-forward done by someone else (unless you want to still do it
yourself) is nice.

Wookey


I agree.

Importantly, Matrix is (1) federated, (2) can be bridged with other 
networks, eg IRC.


(as well as being open and free). Its hard to see Signal inter-operating 
to others. As tech evolves, we need to stick to principles of being open 
in the sense of federation, not being centralized.


--
Alastair McKinstry,
GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Re: python-tz and the timezone saga

[Alastair McKinstry]

On 30/09/2021, 18:00, "Daniel Baumann"  
wrote:

On 9/30/21 10:50, Alastair McKinstry wrote:
> Are any other packages in the same situation ?

In pytzdata, I've removed the embedded copy in order to use the system 
copy (= tzdata) of the zoneinfo files.

Sensible, I think.

There is an updated python-tz (pytz) today - 2021.3 ; I've adapted the build to 
use the system copy (tzdata)

Regards,
Daniel

Regards
Alastair

Bug#995441: ITP: pyodc -- A Python interface to `odc` for encoding/decoding ODB-2 files

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: pyodc
  Version : 1.1.0
  Upstream Author : European Centre for Medium-range Forecasts (ECMWF)
* URL : https://github.com/ecmwf/pyodc
* License : Apache-2
  Programming Lang: Python
  Description : A Python interface to `odc` for encoding/decoding ODB-2 
files

This is a Python interface to ODC, a package already in Debian, for handling
ODB-2 (weather observation) files.

I will maintain this within the Debian Science team, alongside its sister 
packages
for GRIB and BUFR formats

python-tz and the timezone saga

[Alastair McKinstry]

Dear Colleagues

Some time ago (2017) I took responsibility for python-tz (now within the 
python team).


This essentially wraps timezone and adds a few helper functions, but it 
does so taking the original data from a vendored copy of zoneinfo, not 
the standard copy on the system, which it pickles into the python modules.


From the timezone "forking saga" (https://lwn.net/Articles/870478/) it 
looks like this can lead to divergences of output wrt tzdata; that at 
least it needs to build against the "Offical Debian" tzdata and be 
tracked with it (including backports).


Are any other packages in the same situation ? What will Debian be doing 
wrt Timezone  data ?


Best regards

Alastair

--
Alastair McKinstry, , , 
https://diaspora.sceal.ie/u/amckinstry
Misentropy: doubting that the Universe is becoming more disordered.

Bug#995293: ITP: cylc-flow -- rename of upstream source - splitting package

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: cylc-flow
  Version : 8.0
  Upstream Author : NIWA
* URL : http://cylc.github.io/cylc
* License : GPL-3
  Programming Lang: Python
  Description : rename of upstream source - splitting package

This is a workflow manager used in the weather and climate community.
Cylc 7.0+ is already in Debian, but is being split into several upstream 
componets
- cylc-ui, cylc-uiserver and cylc-flow.

cylc-flow is a binary package in the current cylc. I intend to replace cylc 
source package with cylc-flow
and add the cylc-ui* source packages.

Bug#995055: transition: glew

[Alastair McKinstry]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
X-Debbugs-Cc: debian-devel@lists.debian.org

This transition is triggered by an SONAME change upstream.
It does not appear to have any API transition though, and seems to cause no 
glew-related failures.

Ben file:

title = "glew";
is_affected = .depends ~ "libglew2.1" | .depends ~ "libglew2.2";
is_good = .depends ~ "libglew2.2";
is_bad = .depends ~ "libglew2.1";

I've rebuilt all dependencies, with a number of unrelated FTBFS:
Bugs have been submitted against all FTBFS.

glew  OK
info-beamer : : change bd libglew1.5-dev -> libglew-dev  OK
phlipple:  change bd libglew1.5-dev -> libglew-dev  OK
pymol: change bd libglew1.5-dev -> libglew-dev  OK
rlvm: change bd libglew1.5-dev -> libglew-dev  OK

asymptote: OK
avogarolibs: OK
ball: FTBFS (#994480) unrelated (glibc/ rpc header change)
bino: OK
blastem: OK
blender: OK
bzflag: OK
casparcg-server (sid only): FTBFS (#947518)
colmap: OK
colobot: OK
compiz-plugins-experimental: OK
darkradiant: OK
ddnet: OK
dreamchess: OK
endless-sky: OK
fife: OK
freeorion: OK
frogatto (contrib): OK
gambas3: OK
gource: OK
hugin: OK
hyperrogue: OK
k3d (sid only): FTBFS (python2 issues)
kicad: OK
limesuite: OK   
logstalgia: OK
mediastreamer2: (FTFBS with gcc-11), OK
megaglest : OK
mesa-demos: OK
mupen64plus-video-z64: OK
mygui: OK
open3d: OK
openclonk:
opencsg: OK
openctm: OK
openmsx:: OK
otb: OK
paraview: OK
qutemol: OK
rbdoom3bfg: OK
renpy (sid only):FTBFS - needs python-sphinx
rss-glx: OK
scorched3d: OK
slic3r-prusa OK
slop: FTBFS (#994824) unrelated
sludge: OK
sofa-framework: FTBFS (#875184): QT4 removed
spring: OK
supertux: OK
supertuxkart: OK
trigger-rally: OK
tulip: OK
vice (contrib): FTBFS #994835 (jpeg support missing)
vtk7: OK
vtk9: OK
warzone2100: OK
widelands: OK

cegui-mk2: OK
meshlab; OK
openscad: FTBFS (#994937) CGAL-related ?
pcl:OK
 

Bug#994756: ITP: findlibs -- Trivial python package to find C libraries

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: findlibs
  Version : 0.0.2
  Upstream Author :  ECMWF (The European Centre for Medium-Range Weather 
Forecasts)
* URL : https://github.com/ecmwf/findlibs
* License : Apache-2
  Programming Lang: Python
  Description : Trivial python package to find C libraries

This is a trivial package used to find C libraries.
I'm packaging it as it is now a dependency of the ECMWF stack for meteorology 
libraries
(eecodees-python, etc) and hence cfgrib and xarray.

I intend to maintain within Debian Science teams.

Bug#993581: ITP: ecmwflibs -- A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software.

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: ecmwflibs
  Version : 0.13.3
  Upstream Author : European Centre for Medium-Range Forecasts
* URL : https://github.com/ecmwf/ecmwflibs
* License : Apache 2.0
  Programming Lang: Python
  Description : A Python package that wraps some of ECMWF libraries to be 
used by Python interfaces to ECMWF software.

A Python package that wraps some of ECMWF libraries to be used by Python 
interfaces to ECMWF software.
This is now a dependency of other ECMWF libraries (python3-eccodes, cfgrib) and 
hence xarray and
other python code.
I intend to manage this within the Science Team and it is on Salsa already.

Bug#980463: ITP: scil -- Scientific Compression Library (SCIL)

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: scil
  Version : 0.1
  Upstream Author : Julian Kunkel 
* URL : https://github.com/JulianKunkel/scil
* License : LGPL-3
  Programming Lang: C
  Description : Scientific Compression Library (SCIL)

The Scientific Compression Library (SCIL) is a  meta-compressor that allows 
users
to set various quantities that define the acceptable error and the expected 
performance behavior.
The library aims to choose the appropriate chain of algorithms to yield the 
users requirements
(this feature is still under development). This approach is a crucial step 
towards a
scientifically safe use of much-needed lossy data compression, because it 
disentangles the tasks
of determining scientific ground characteristics of tolerable noise, from the 
task of
determining an optimal compression strategy given target noise levels and 
constraints.
Future algorithms are used without change in the application code, once they 
are integrated into SCIL.
SCIL also comes with a pattern library to generate various relevant synthetic 
test patterns.
Further tools are provided to plot, add noise or to compress CSV and NetCDF3 
files.
Internally, support functions simplify the development of new algorithms and 
the testing.

This is then an optional dependency of ESDM, also being packaged.

uscan/watch regexp and multiple versions

[Alastair McKinstry]

Hi,

I'm adding watch files for projects, and have a problem with multiple 
version number epochs in a github release.


Some of the stack(s) i'm watching have versions, eg. "3.4.1" but also 
bundled version numbers "2020.10.1" that I wish to ignore;


Is there any examples how to set watch files to _ignore_ patterns as 
well as watch them?


Thanks

Alastair


--
Alastair McKinstry, , , 
https://diaspora.sceal.ie/u/amckinstry
Misentropy: doubting that the Universe is becoming more disordered. 

Bug#980113: ITP: fpzip -- Floating Point array compression library

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: fpzip
  Version : 1.3.0
  Upstream Author : LLNL 
* URL : https://computing.llnl.gov/projects/fpzip
* License : BSD
  Programming Lang: C
  Description : Floating Point array compression library

fpzip is a library and command-line utility for lossless and optionally lossy
compression of 2D and 3D floating-point arrays.  fpzip assumes spatially
correlated scalar-valued data, such as regularly sampled continuous functions,
and is not suitable for compressing unstructured streams of floating-point
numbers.  In lossy mode, fpzip discards some number of least significant
mantissa bits and losslessly compresses the result.  fpzip currently supports
IEEE-754 single (32-bit) and double (64-bit) precision floating-point data.
fpzip is written in C++ but has a C compatible API that can be called from
C and other languages.  It conforms to the C++98 and C89 language standards.

fpzip is released as Open Source under a three-clause BSD license.  

This is a dependency of other packages - A scientific compression library
that is an extension for NetCDF/HDF5, amongst others.

Bug#973615: ITP: odc -- Package to read ODB (Observation Database at ECMWF) data

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: odc
  Version : 1.1.0
  Upstream Author : European Centre for Medium-Range Forecasts (ECMWF) 
i...@ecmwf.int
* URL : https://github.com/ecmwf/odc
* License : Apache-2
  Programming Lang: C++
  Description : Package to read ODB (Observation Database at ECMWF) data

ODC is a tool and library to access the ODB Observation Database at ECMWF.
ECMWF is the European Centre for Medium-Range Forecasts.
ODC and other packages (Metkit, FDB) refactor and replace the ODB-API package
already present in Debian.

It will be used by Metview and other tools.

Bug#972873: ITP: fdb -- FDB (Fields DataBase) is a domain-specific object store for storing, indexing and retrieving GRIB data.

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: fdb
  Version : 5.7.0
  Upstream Author : ECMWF (European Centre for Medium-Range Weather Forecasts)
* URL : http://github.com/ecmwf/fdb
* License : Apache 2
  Programming Lang: C++
  Description : FDB (Fields DataBase) is a domain-specific object store for 
storing, indexing and retrieving GRIB data.

FDB (Fields DataBase) is a domain-specific object store developed at ECMWF
for storing, indexing and retrieving GRIB data. Each GRIB message is stored as 
a field and indexed
trough semantic metadata (i.e. physical variables such as temperature, 
pressure, ...).
A set of fields can be retrieved specifying a request using a specific language 
developed for accessing MARS_ Archive

FDB exposes a C++ API as well as CLI tools_.
 
This is to be used by the rest of the ECMWF (European Centre for Medium-Range 
Weather Forecasts)
stack currently on Debian - Metview, etc.

Bug#972624: ITP: metkit -- Meterological tookit implementing the MARS language

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: metkit
  Version : 1.6.0
  Upstream Author : European Centre for Medium-Range Weather Forecasts
* URL : http://github.com/ecmwf/metkit
* License : Apache-2
  Programming Lang: C++, Fortran
  Description : Meterological tookit implementing the MARS language

 MetKit is a toolkit from ECMWF for manipulating and describing meteorological
 objects, implementing the MARS language and associated processing and 
semantics.
 MARS is the Meteorological Archive Retrieval System from ECMWF.
 
 libmetkit and its functionality are currently provided by the older "ODB-API"
 package in Debian, but this is being withdrawn and the metkit library (used
 optionally by other tools, eg Metview, in Debian) is being packaged separately.
 

Bug#969088: ITP: esdm -- Earth System Data Middleware for earth system simulation

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: esdm
  Version : 0.1.0
  Upstream Author : Julian Kunkel
* URL : https://github.com/ESiWACE/esdm
* License : GPL
  Programming Lang: C
  Description : Earth System Data Middleware for  earth system  simulation

 The middleware for earth system data is a prototype to improve I/O performance
 for earth system simulation as used in climate and weather applications.
 ESDM exploits structural information exposed by workflows, applications as well
 as data description formats such as HDF5 and NetCDF to
 more efficiently organize metadata and data across a variety of storage 
backends.

 It is planned to maintain this within the Debian Science team; it is a growing
 piece of "expected functionality" on systems running climate models.

Bug#962189: ITP: ucx -- A high performance communication library for HPC, AI, Data analytics, and beyond

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: ucx
  Version : 1.8.0
  Upstream Author : Mellanox Ltd. 
* URL : https://openucx.github.io/ucx/index
* License : BSD
  Programming Lang: C
  Description : A high performance communication library for HPC, AI, Data 
analytics, and beyond

Unified Communication X (UCX) provides an optimized communication layer for
Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric 
applications.
.
UCX utilizes high-speed networks for inter-node communication,
and shared memory mechanisms for efficient intra-node communication.
.
It is expected to use UCX as the transport layer under openmpi and mpich 
(already in Debian).
.
It will be maintained within the Debian Science team.

Re: [Fwd: Bug#959057: RFS: dh-cmake/0.4 [ITP] -- Debhelper programs for CMake projects]

[Alastair McKinstry]

Dear Kyle,

I'm willing to sponsor this.

It overlaps /complements a package I maintain "ecbuild", which is a set
of cmake macros and wrappers used by ECMWF (www.ecmwf.int) for their
software stack.
At the moment ecbuild provides some standard flags, etc when
--buildsystem=ecbuild is used  but the plan is to expand this for other
cmake fragments and dependencies similar to work here Packages in the
ECMWF stack typically include cmake fragments in
/usr/lib/$arch/cmake/$package/* which define for example which libraries
and headers are needed; eg. when something at the botttom of the stack
is built with libjemalloc, packages throughout the stack now need to
link against it and include libjemalloc-dev in the dependencies for
their libX-dev packages. ;

this can be managed better with work in ecbuild or dh-cmake.

Best regards

Alastair


On 11/05/2020 18:56, Kyle Edwards wrote:
>  Forwarded Message 
> From: Kyle Edwards 
> Reply-to: Kyle Edwards ,
> 959...@bugs.debian.org
> To: Debian Bug Tracking System 
> Subject: Bug#959057: RFS: dh-cmake/0.4 [ITP] -- Debhelper programs for
> CMake projects
> Date: Tue, 28 Apr 2020 20:54:33 +
>
>> Package: sponsorship-requests
>> Severity: wishlist
>>
>> Dear mentors,
>>
>> I am looking for a sponsor for my package "dh-cmake":
>>
>>  * Package name: dh-cmake
>>    Version : 0.4
>>    Upstream Author : Kyle Edwards 
>>  * URL : https://gitlab.kitware.com/debian/dh-cmake
>>  * License : BSD-3
>>  * Vcs : https://gitlab.kitware.com/debian/dh-cmake.git
>>    Section : devel
>>
>> It builds those binary packages:
>>
>>   dh-cmake - Debhelper programs for CMake projects
>>
>> To access further information about this package, please visit the
>> following URL:
>>
>>   https://gitlab.kitware.com/debian/dh-cmake
>>
>> Regards,
>>
>> --
>>   Kyle Edwards

-- 
Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, 
phone: 087-6847928
Green Party Councillor, Galway County Council 

Re: Third-party forks of packaged projects

[Alastair McKinstry]

On 28/04/2020 21:44, Kyle Edwards wrote:
> On Sat, 2020-04-25 at 20:31 +0200, Thomas Goirand wrote:
>> I'd say that it depends, and that it should be addressed on the
>> case-by-case basis.
> I do have another scenario I'd like to address. ADIOS uses a stack of
> closely related but separate projects, all developed by Greg
> Eisenhauer, which, as far as I know, are not used by any other major
> software project. ADIOS is the main driver behind them. The projects
> are the following:
>
> https://github.com/GTkorvo/atl
> https://github.com/GTkorvo/dill
> https://github.com/GTkorvo/EVPath
> https://github.com/GTkorvo/ffs
>
> ADIOS vendors these projects as well. Are these reasonable to be
> packaged with ADIOS, or should they be packaged separately?

I think vendoring libraries that are only used by this package is fine.

I would however put them in a "public" place and namespace (eg
/usr/lib/$ARCH/libatl.* ) rather than a subdir or namespace
('libatl-adios')  so that there is a clear collision if someone else
attempts to package it; in which case it can be 'unvendored' and shared.

> Kyle

Regards

Alastair

-- 
Alastair McKinstry, , , 
https://diaspora.sceal.ie/u/amckinstry
Misentropy: doubting that the Universe is becoming more disordered. 

Re: new kubernetes packaging

[Alastair McKinstry]

On 24/03/2020 23:05, Simon McVittie wrote:
> On Tue, 24 Mar 2020 at 15:14:02 -0700, Russ Allbery wrote:
>> I think this calculus is not entirely obvious.
> Thank you for applying some much-needed nuance to this issue. I suspect
> the ideal policy is neither "never use vendored dependencies" nor
> "always use vendored dependencies".
>
> Many of our packaging policies were designed for medium-sized C/C++
> libraries - not much smaller than, say, zlib, but not much bigger than
> something like GTK either - with a sufficiently stable API and ABI that
> versions are somewhat interchangeable, and I think the further away
> from that we get, the less well those policies will fit. We have a lot
> of trouble with micropackages (as exemplified by the nodejs ecosystem
> in which many packages provide a single function), but at the other end
> of the scale, monoliths like Libreoffice, TeXLive and Firefox don't fit
> a lot of our usual policies and practices so well either.
>
We should probably look at formalizing a concept of "bundle" packages,
shipping either a number of static libs-like files (go) in a -dev package

or a bundle of microlibs in a libjs-* package.

Dependencies using them would use Built-Using: for package construction
but also ship a description of the exact content versions.

Note that we also have bunches of lib* packages shipping multiple small
C/C++ shared libs, as upstream does it this way;

we need to set policies in place for  handling incompatible upgrades in
these cases: what do we need to do to ship multiple incompatible copies
of a Go static lib (do we ever do that? )

One example: openmpi ships multiple shared libs in a libopenmpi3
package. I'm arguing with upstream that the SOVERSIONS of the shared
libs need to be kept in lockstep

so that if for example package 'libopenmpi3' ships 'libopen-pal.so.40',
then 'libopenmpi4' does not; the soversions gets bumped to '*.so.50*'
for them all, even if no code changes in this particular library.

> smcv
>
-- 
Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, 
phone: 087-6847928
Green Party Councillor, Galway County Council 

Bug#954068: ITP: metview-python -- Python(3) wrapper to the Metview package

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: metview-python
  Version : 1.1.2
  Upstream Author : European Centre for Medium-Range Weather Forecasts (ECMWF)
* URL : https://github.com/ecmwf/metview-python
* License : Apache-2
  Programming Lang: Python, C
  Description : Python(3) wrapper to the Metview package

This is a Python interface to the Metview Meteorological Visualisation package.
Metview is already part of Debian.

Bug#951586: ITP: isodatetime -- Python ISO 8601 date time parser and data model/manipulation utilities

[Alastair McKinstry]

Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: isodatetime
  Version : 2.0.1
  Upstream Author : Oliver Sanders
* URL : https://github.com/metomi/isodatetime
* License : LGPL 3.0
  Programming Lang: Python
  Description : Python ISO 8601 date time parser and data 
model/manipulation utilities


This is a dependency of the latest version of 'cylc', already in Debian.

Python ISO8601 (2004) full-specification parser and data model/manipulation 
utilities. Intended to be used in a similar way to Python's datetime module.

ISO8601 (2004) is an international standard for writing down date/time 
information.

It is the correct, internationally-friendly, computer-sortable way to 
numerically represent date/time information.

I intend to maintain this with the Python packaging team.

Accepted atlas-ecmwf 0.19.0-8 (source) into unstable

[Alastair McKinstry]

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Date: Mon, 13 Jan 2020 14:05:58 +
Source: atlas-ecmwf
Architecture: source
Version: 0.19.0-8
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-8) unstable; urgency=medium
 .
   * Fix cut/paste error in unsigned-long.patch that breaks on 32-bit archs
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Accepted atlas-ecmwf 0.19.0-7 (source) into unstable

[Alastair McKinstry]

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Date: Fri, 10 Jan 2020 11:47:23 +
Source: atlas-ecmwf
Architecture: source
Version: 0.19.0-7
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-7) unstable; urgency=medium
 .
   * Ensure ENNABLE_32_BIT_HOST is set on 32-bit archs in d/rules
   * unsigned-long.patch: make changes conditional on ATLAS_BITS_GLOBAL==64
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Accepted atlas-ecmwf 0.19.0-6 (source) into unstable

[Alastair McKinstry]

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Source: atlas-ecmwf
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Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-6) unstable; urgency=medium
 .
   * Add libcgal-dev as Depedency of -dev package
   * Drop libcgal-dev dependency on armel, where is currently FTBFS
   * unsigned-long.patch: Drop support for unsigned longs, as it breaks
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Accepted modules 4.4.1-1 (source) into unstable

[Alastair McKinstry]

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Date: Thu, 09 Jan 2020 13:02:22 +
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Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 modules (4.4.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Specify location of pager=/usr/bin/less
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Accepted atlas-ecmwf 0.19.0-5 (source) into unstable

[Alastair McKinstry]

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Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
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 .
   * size_t patch for 32-bit systems compile
   * Disable tests for this release
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Accepted ecflow 4.17.1-1 (source) into unstable

[Alastair McKinstry]

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Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 ecflow (4.17.1-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted gridtools 1.1.2-1 (source) into unstable

[Alastair McKinstry]

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Date: Wed, 08 Jan 2020 09:16:10 +
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Architecture: source
Version: 1.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 gridtools (1.1.2-1) unstable; urgency=medium
 .
   * New upstream release
   * Add mipsel to list of non -march=native architectures
   * Don't include cpp_bindgen as it requires a pull from git external
 project
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Accepted atlas-ecmwf 0.19.0-4 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 08 Jan 2020 07:13:48 +
Source: atlas-ecmwf
Architecture: source
Version: 0.19.0-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-4) unstable; urgency=medium
 .
   * Build-dep on libeckit-dev (>= 1.4.7-7 ) as it now pulls
 in libaec-dev needed to build
   * Drop our dependencies on :libssl-dev, libcurl4-gnutls-dev,
 libxxhash-dev, libsnappy-dev, liblz4-dev, libbz2-dev ;
 pulled in by libeckit-dev
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Accepted eckit 1.4.7-7 (source) into unstable

[Alastair McKinstry]

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Date: Tue, 07 Jan 2020 15:53:05 +
Source: eckit
Architecture: source
Version: 1.4.7-7
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-7) unstable; urgency=medium
 .
   * libeckit-dev now depends on libaec-dev because of deps in the
 interface blocks in Cmake files (now AEC support enabled)
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Accepted eckit 1.4.7-6 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Tue, 07 Jan 2020 09:33:20 +
Source: eckit
Architecture: source
Version: 1.4.7-6
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-6) unstable; urgency=medium
 .
   * Don't use RADOS on mipsel; not available
   * libeckit-dev now depends on libeigen3-dev because of deps in the
 interface blocks in Cmake files
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Accepted atlas-ecmwf 0.19.0-3 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 07 Jan 2020 10:30:36 +
Source: atlas-ecmwf
Architecture: source
Version: 0.19.0-3
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-3) unstable; urgency=medium
 .
   * Install includes in correct directory in -dev pkg
   * Enable proj support
   * Drop Dependency on gridtools-dev until we build against it properly
   * Change paths in cmake files to match installed locations
   * Add eckt, eigen3 dependencies to -dev pkg as needed to build with cmake
   * Add Breaks/Replaces for files that moved from metview* -> atlas
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Re: Vital fix to console-common stuck in testing for three months

[Alastair McKinstry]

Hi

Apologies I have never done a stable update, and am not sure I have 
permissions.


I've submitted the bug request with debdiff to release.debian.org for 
FTP master go-ahead in the next upload.


Best regards

Alastair

On 16/12/2019 01:17, Oskar Berggren wrote:

Hi,

Buster has 0.7.90 of console-common, which unfortunately has a bug so 
that the install-keymap binary was accidentally excluded from the package.


This was reported in August 2019 as a grave bug: 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=935096


It was fixed early September in 0.7.91 and migrated to testing 2019-09-13:
https://tracker.debian.org/pkg/console-common

Sadly, this fix has not yet made it into stable. Is something holding 
this up, or has it just been forgotten?


I'm working to update a custom "edition" based on something like 
old-old-old-stable to Buster and am now stuck in this because I cannot 
get the boot keymap I want.



Kind regards,
Oskar


--
Alastair McKinstry, , , 
https://diaspora.sceal.ie/u/amckinstry
Misentropy: doubting that the Universe is becoming more disordered.

Accepted eckit 1.4.7-5 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 06 Jan 2020 15:18:25 +
Source: eckit
Architecture: source
Version: 1.4.7-5
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-5) unstable; urgency=medium
 .
   * Don't use RADOS on alpha, hpaa, powerpc
   * hurd.patch: Add PATH_MAX as needed
   * aec.patch: Add FindAEC.cmake to discover AEC
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Accepted gridtools 1.0.2-3 (source amd64) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 05 Jan 2020 12:54:10 +
Source: gridtools
Binary: libgridtools-dev
Architecture: source amd64
Version: 1.0.2-3
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Description:
 libgridtools-dev - Framework for storage and computation on Weather and 
Climate Grid
Changes:
 gridtools (1.0.2-3) unstable; urgency=medium
 .
   * Use ecbuild now instead of cmake
   * Set -DGT_ENABLE_BACKEND_X86-Off -DGT_ENABLE_BACKEND_NAIVE=Off to ensure
 -march=native not used on archs where it FTBFS
   * Drop ${shlibs:Depends} in bin package as it provides static archives only
   * Fix homepage to gridtools.github.io
   * libgridtools-dev requires mpi, ecbuild to compile
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Accepted eckit 1.4.7-4 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Sun, 05 Jan 2020 13:39:00 +
Source: eckit
Architecture: source
Version: 1.4.7-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-4) unstable; urgency=medium
 .
   * Use openblas on archs where it is available, else reference libblas-dev,
 liblapack-dev
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Accepted eckit 1.4.7-3 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Sat, 04 Jan 2020 10:47:42 +
Source: eckit
Architecture: source
Version: 1.4.7-3
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-3) unstable; urgency=medium
 .
   * libeckit-dev also needs to depend on  libssl-dev,
 libcurl4-gnutls-dev,  libxxhash-dev,  libsnappy-dev,  liblz4-dev,
 libbz2-dev, because of cmake interface deps
   * Ditto with openblas and alternatives.
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Accepted atlas-ecmwf 0.19.0-2 (source) into unstable

[Alastair McKinstry]

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Date: Sat, 04 Jan 2020 08:54:31 +
Source: atlas-ecmwf
Architecture: source
Version: 0.19.0-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 atlas-ecmwf (0.19.0-2) unstable; urgency=medium
 .
   * Build without Fortran support until fckit is in archive.
   * Build-depend on libcgal-dev for tesselation; on latex for docs
   * Build-depend on libssl-dev, libcurl4-gnutls-dev, libxxhash-dev,
 libsnappy-dev, liblz4-dev, libbz2-dev
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Accepted eckit 1.4.7-2 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Sat, 04 Jan 2020 09:07:50 +
Source: eckit
Architecture: source
Version: 1.4.7-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-2) unstable; urgency=medium
 .
   * libeckit-dev needs to depend on libopenmpi-dev.
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Accepted atlas-ecmwf 0.19.0-1 (source amd64) into unstable, unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 01 Jan 2020 15:09:43 +
Source: atlas-ecmwf
Binary: libatlas-ecmwf-0 libatlas-ecmwf-0-dbgsym libatlas-ecmwf-dev 
libatlas-ecmwf-utils libatlas-ecmwf-utils-dbgsym
Architecture: source amd64
Version: 0.19.0-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Description:
 libatlas-ecmwf-0 - Numerical weather prediction and climate modelling library
 libatlas-ecmwf-dev - Numerical weather prediction and climate modelling 
library - dev
 libatlas-ecmwf-utils - Numerical weather prediction and climate modelling 
library - util
Closes: 942635
Changes:
 atlas-ecmwf (0.19.0-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942635)
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Accepted paraview 5.7.0-4 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sat, 28 Dec 2019 16:21:57 +
Source: paraview
Architecture: source
Version: 5.7.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Alastair McKinstry 
Closes: 823529 946758 947280
Changes:
 paraview (5.7.0-4) unstable; urgency=medium
 .
   [ Gilles Filippini ]
   * New patch libatomic.patch: tentative fix for FTBFS on armel and mipsel.
 Closes: #947280
   * Hard-code Build-Dep on python3.8-dev. This wasn't being pulled in correctly
 leading to FTBFS. Closes: #946758
 .
   [ Alastair McKinstry ]
   * python vtk now works. Closes: #823529
   * Fix warnings with 'is' and literals in python3.8+
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Accepted eckit 1.4.7-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Tue, 31 Dec 2019 09:02:15 +
Source: eckit
Architecture: source
Version: 1.4.7-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eckit (1.4.7-1) unstable; urgency=medium
 .
   * New upstream release
   * Set AEC_INCLUDE_DIR to discover AEC
   * Use openblas-dev for blas, lapack
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eckit_1.4.7.orig-data.tar.xz
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eckit_1.4.7.orig.tar.xz
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eckit_1.4.7-1.debian.tar.xz

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Accepted gridtools 1.0.2-2 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Mon, 30 Dec 2019 08:14:40 +
Source: gridtools
Architecture: source
Version: 1.0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 gridtools (1.0.2-2) unstable; urgency=medium
 .
   * Reupload with source upload
   * Standards-Version: 4.4.1.0
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Accepted gridtools 1.0.2-1 (source amd64) into unstable, unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Sun, 08 Dec 2019 15:26:03 +
Source: gridtools
Binary: libgridtools-dev
Architecture: source amd64
Version: 1.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Description:
 libgridtools-dev - Framework for storage and computation on Weather and 
Climate Grid
Closes: 935264
Changes:
 gridtools (1.0.2-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #935264)
   * re-done with Apache license referenced in d/copyright
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gridtools_1.0.2-1.debian.tar.xz
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gridtools_1.0.2-1_amd64.buildinfo
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libgridtools-dev_1.0.2-1_amd64.deb

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Accepted python-escript 5.4-4 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Thu, 19 Dec 2019 08:45:32 +
Source: python-escript
Architecture: source
Version: 5.4-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Changes:
 python-escript (5.4-4) unstable; urgency=medium
 .
   * Fix build issue on 32-bit systems: split debian/sid_options.py into
 mpi and non-mpi parts, settin werror=False
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Accepted openmpi 4.0.2-5 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Wed, 18 Dec 2019 13:41:29 +
Source: openmpi
Architecture: source
Version: 4.0.2-5
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 946542
Changes:
 openmpi (4.0.2-5) unstable; urgency=medium
 .
   * Fix typos in d/changelog
   * Ship orte-server. Closes: #946542
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Accepted ansimarkup 1.4.0-2 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 18 Dec 2019 12:54:30 +
Source: ansimarkup
Architecture: source
Version: 1.4.0-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 ansimarkup (1.4.0-2) unstable; urgency=medium
 .
   * Re-upload a source-only upload
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Accepted magics-python 1:1.1.1-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 18 Dec 2019 10:12:33 +
Source: magics-python
Architecture: source
Version: 1:1.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 magics-python (1:1.1.1-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted newt 0.52.21-4 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Tue, 17 Dec 2019 07:32:55 +
Source: newt
Architecture: source
Version: 0.52.21-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 946880
Changes:
 newt (0.52.21-4) unstable; urgency=medium
 .
   * Switch from sgmltools-lite to docbook-utils for py2, sgmltools orphaned.
 Closes: #946880
   * Standards-Version: 4.4.1.0
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Accepted python-escript 5.4-3 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Mon, 16 Dec 2019 14:17:27 +
Source: python-escript
Architecture: source
Version: 5.4-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Closes: 917689 937731
Changes:
 python-escript (5.4-3) unstable; urgency=medium
 .
   * Drop python-numpy build-depends. Closes: #937731
   * Standards-Version now 4.4.1.0
   * Build-Depend on trilinos-dev for 64-bit archs
   * Build-depend on gmsh
   * Drop -Wno-maybe-uninitialized and use -Wno-unitialized instead because of
 warnings. Closes: #917689
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Accepted pnetcdf 1.12.1-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Fri, 13 Dec 2019 13:44:44 +
Source: pnetcdf
Architecture: source
Version: 1.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 pnetcdf (1.12.1-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted paraview 5.7.0-3 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 11 Dec 2019 09:16:00 +
Source: paraview
Architecture: source
Version: 5.7.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Alastair McKinstry 
Changes:
 paraview (5.7.0-3) unstable; urgency=medium
 .
   * Hard-code Build-Dep on python3.8-dev. This wasn't being pulled in correctly
 leading to FTBFS.
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Accepted metview 5.7.4-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Sun, 08 Dec 2019 15:01:49 +
Source: metview
Architecture: source
Version: 5.7.4-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 metview (5.7.4-1) unstable; urgency=medium
 .
   * New upstream release
   * Build-Depend on libpng-dev, clang-tidy
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Accepted harp 1.9.2-1 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 06 Dec 2019 09:01:51 +
Source: harp
Architecture: source
Version: 1.9.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers  

Changed-By: Alastair McKinstry 
Changes:
 harp (1.9.2-1) unstable; urgency=medium
 .
   * New upstream release
   * Library minor version now 10.0.5
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Accepted ecflow 4.16.0-2 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Fri, 06 Dec 2019 11:23:57 +
Source: ecflow
Architecture: source
Version: 4.16.0-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 945637
Changes:
 ecflow (4.16.0-2) unstable; urgency=medium
 .
   * Standards-Version: 4.4.1.0
   * Ensure scripts are labelled python3 not python. Closes: #945637
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Accepted python-xarray 0.14.1-2 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 06 Dec 2019 11:27:37 +
Source: python-xarray
Architecture: source
Version: 0.14.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Changes:
 python-xarray (0.14.1-2) unstable; urgency=medium
 .
   * numpy has transitioned to python-numpy-doc for docs needed for build.
 Use instead odd python-numpydoc
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Accepted paraview 5.7.0-2 (source amd64 all) into unstable, unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 17 Nov 2019 18:31:26 +
Source: paraview
Binary: paraview paraview-dbgsym paraview-dev paraview-dev-dbgsym paraview-doc 
python3-paraview python3-paraview-dbgsym
Architecture: source amd64 all
Version: 5.7.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Alastair McKinstry 
Description:
 paraview   - Parallel Visualization Application
 paraview-dev - Parallel Visualization Application. Development header files
 paraview-doc - Parallel Visualization Application. Comprehensive documentation
 python3-paraview - Parallel Visualization Application. python-support
Closes: 944324 944353 944533 944582
Changes:
 paraview (5.7.0-2) unstable; urgency=medium
 .
   * Rename paraview-python to standard python3-paraview. Closes: #944324
   * paraview-doc now Multi-Arch: foreign
   * Disable OpenGL features that are not available on Arm to
 fix FTBFS. Closes: #944353
   * Update options thanks to Mathieu Westphal:
   * Now include PDAL support. Depend on libpdal-dev
   * Now include LZ4 support. Depend on liblz4-dev
   * Run autopkgtest with python3. Closes: #944533
   * Include vtkmodules in python3-paraview. Closes: #944582
   * Change paraview-dev dep from Qt4-dev-tools to qt5tools-dev-tools
   * Drop unnecessary deps on python3, python3-vtk in python3-paraview
   * python3.8.patch: Update mpi4py.MPI.c with latest cython for python3.8
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Accepted python-xarray 0.14.1-1 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 03 Dec 2019 12:08:12 +
Source: python-xarray
Architecture: source
Version: 0.14.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Changes:
 python-xarray (0.14.1-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted vistrails 3.0~git+9dc22bd-2 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 02 Dec 2019 12:18:09 +
Source: vistrails
Architecture: source
Version: 3.0~git+9dc22bd-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 944134
Changes:
 vistrails (3.0~git+9dc22bd-2) unstable; urgency=medium
 .
   * python-vtk6 dependency now replaced by python3-vtk7.
 Closes: #944134
   * Ditto python-matplotlib -> python3-matplotlib
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Accepted mpich 3.3.2-2 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 02 Dec 2019 09:09:07 +
Source: mpich
Architecture: source
Version: 3.3.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Closes: 945933
Changes:
 mpich (3.3.2-2) unstable; urgency=medium
 .
   * Force gfortran over flang compiler for this release.
   * Ack. bug fixed in experimental release. Closes: #945933
Checksums-Sha1:
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Files:
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mpich_3.3.2-2.debian.tar.xz

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Accepted mpich 3.3.2-1 (source) into experimental

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 01 Dec 2019 12:04:44 +
Source: mpich
Architecture: source
Version: 3.3.2-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Changes:
 mpich (3.3.2-1) experimental; urgency=medium
 .
   * New upstream release
   * Drop obsolete Breaks/Replaces from d/control
   * Standards-Version: 4.4.1.0
   * Fix NO_REAL128 conditional in d/rules
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Files:
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Accepted magics++ 4.2.3-1 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 29 Nov 2019 12:41:17 +
Source: magics++
Architecture: source
Version: 4.2.3-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 magics++ (4.2.3-1) unstable; urgency=medium
 .
   * New upstream release
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Files:
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magics++_4.2.3.orig.tar.xz
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magics++_4.2.3-1.debian.tar.xz

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Accepted cmor 3.5.0-2 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 30 Nov 2019 18:53:58 +
Source: cmor
Architecture: source
Version: 3.5.0-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 945654
Changes:
 cmor (3.5.0-2) unstable; urgency=medium
 .
   * Drop unnecessary dep on python. Closes: #945654
Checksums-Sha1:
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Files:
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cmor_3.5.0-2.debian.tar.xz

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Accepted metview 5.7.3-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Sat, 30 Nov 2019 12:49:54 +
Source: metview
Architecture: source
Version: 5.7.3-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 metview (5.7.3-1) unstable; urgency=medium
 .
   * New upstream release
   * More work on mir-32bit.patch (use size_t instead of prec_t due to
 lack of int base class in eckit SimpleOption)
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metview_5.7.3.orig-data.tar.xz
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metview_5.7.3.orig.tar.xz
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metview_5.7.3-1.debian.tar.xz

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Accepted cdo 1.9.8-2 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 30 Nov 2019 11:31:10 +
Source: cdo
Architecture: source
Version: 1.9.8-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 945649
Changes:
 cdo (1.9.8-2) unstable; urgency=medium
 .
   * Drop recommends on python-cdo. Closes: #945649
Checksums-Sha1:
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Files:
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Accepted eccodes 2.15.0-1 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 29 Nov 2019 14:00:37 +
Source: eccodes
Architecture: source
Version: 2.15.0-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 eccodes (2.15.0-1) unstable; urgency=medium
 .
   * Drop Fortran-Mod: clause in d/control; dh_fortran_mod now uses
 ${misc:Depends} instead.
   * New upstream release
   * Standards-Version: 4.4.1.0
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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Accepted metview 5.7.2.1-2 (source) into unstable

[Alastair McKinstry]

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Date: Thu, 28 Nov 2019 16:18:57 +
Source: metview
Architecture: source
Version: 5.7.2.1-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 metview (5.7.2.1-2) unstable; urgency=medium
 .
   * Fix for FTBFS on 32-bit systems - mir-32bit.patch
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Accepted fparser 0.0.10-1 (source all) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Thu, 21 Nov 2019 09:39:33 +
Source: fparser
Binary: python3-fparser
Architecture: source all
Version: 0.0.10-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Description:
 python3-fparser - Python3 Parser for the Fortran language
Changes:
 fparser (0.0.10-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted xdmf 3.0+git20190531-4 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 27 Nov 2019 14:21:03 +
Source: xdmf
Architecture: source
Version: 3.0+git20190531-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 942187 942468
Changes:
 xdmf (3.0+git20190531-4) unstable; urgency=medium
 .
   * Add Breaks: libxdmf3 to libxdmf-dev. Closes: #942187, #942468
   * Depend on mpi-default-dev
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Accepted harp 1.9.1-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Tue, 26 Nov 2019 14:57:08 +
Source: harp
Architecture: source
Version: 1.9.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers  

Changed-By: Alastair McKinstry 
Changes:
 harp (1.9.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Update patch to use libharp.so.10
   * Library minor version now 10.0.4
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Accepted modules 4.4.0-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Fri, 22 Nov 2019 08:59:51 +
Source: modules
Architecture: source
Version: 4.4.0-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Changes:
 modules (4.4.0-1) unstable; urgency=medium
 .
   * New upsteam release
   * Standards-Version: 4.4.1.0
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Accepted openmpi 4.0.2-4 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Thu, 21 Nov 2019 14:35:36 +
Source: openmpi
Architecture: source
Version: 4.0.2-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 945170
Changes:
 openmpi (4.0.2-4) unstable; urgency=medium
 .
   * Version numbers on libs changed:
- libmpi_java.so now version 40.20.0
- libmca_common_monitoring.so now 50.10.0
- libmca_common_ompio.so now 41.19.2
- libmca_common_verbs.so now 40.20.0
- libmca_common_ofi.so, liboshmem.so no longer produced
- Closes: #945170,
   * Close old bug: Closes #945121
   * Update postinst scripts, remove preinst scripts; remove stuff no longer
 needed post buster
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Accepted metview 5.7.2.1-1 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Thu, 21 Nov 2019 15:00:45 +
Source: metview
Architecture: source
Version: 5.7.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 945096
Changes:
 metview (5.7.2.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Add missing build-depends: libxxhash-dev, libsnappy-dev, liblz4-dev,
   libbz2-dev. Closes: #945096
   * Drop ACCEPT_USE_OF_DEPRECATED_PROJ_API_H no longer needed
   * Build and include libmir and components
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Accepted openmpi 4.0.2-3 (source) into unstable

[Alastair McKinstry]

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Format: 1.8
Date: Wed, 20 Nov 2019 09:24:14 +
Source: openmpi
Architecture: source
Version: 4.0.2-3
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 494046 814451 916159 916794 916860 933738
Changes:
 openmpi (4.0.2-3) unstable; urgency=medium
 .
   * Add dependency on libevent-dev to libopenmpi-dev. Closes: #933738
   * Drop deprecated Fortran-Mod: clause from d/control. Closes: #916860
   * Enable java support for riscv64. Closes: #933738
   * dh_fortran_mod now adds Fortran dependencies. Closes: #916159
   * As of last upload, openmpi no longer prints warnings to stderr
 by default. Closes: #814451
   * Recent openmpi works in chroot. Closes: #494046
   * OpenMPI4 works with hwloc2. Closes: #916794.
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Accepted openmpi 4.0.2-2 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Tue, 19 Nov 2019 11:55:49 +
Source: openmpi
Architecture: source
Version: 4.0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 941996
Changes:
 openmpi (4.0.2-2) unstable; urgency=medium
 .
   * Move to unstable. Closes: #941996
   * Set OMPI_MCA_btl_base_warn_component_unused=0 by default to silence
 warnings. Add README.Debian to say so.
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Accepted python-xarray 0.14.0-2 (source) into unstable

[Alastair McKinstry]

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Hash: SHA256

Format: 1.8
Date: Sun, 17 Nov 2019 18:32:58 +
Source: python-xarray
Architecture: source
Version: 0.14.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alastair McKinstry 
Closes: 944044
Changes:
 python-xarray (0.14.0-2) unstable; urgency=medium
 .
   [ Matthias Klose ]
   * Fix test failures with new cftime 1.0.4, taken from upstream.
   * _get_scheduler() exception if dask.multiprocessing missing, taken
 from upstream.
 .
   [ Alastair McKinstry ]
   * xfail-dask.patch: Dask version in Debian is < 2.
 Label some functionality XFAIL, set dask='allowed' rather than
 'parallelize' where possible for the rest
   * xfail-rasterio.patch: Disable tests due to issue in rasterio:
 "WarpedVRT does not permit boundless reads".
 Closes: #944044
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Accepted cctools 7.0.9-5 (source) into unstable

[Alastair McKinstry]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 17 Nov 2019 08:45:05 +
Source: cctools
Architecture: source
Version: 7.0.9-5
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry 
Changed-By: Alastair McKinstry 
Closes: 755181 936277
Changes:
 cctools (7.0.9-5) unstable; urgency=medium
 .
   * Add dh-python to Build-Depends for --with python3.
   * Drop ${python3:Depends} in d/control for main package in favour of
 python3 as dh_python3 incorrectly includes python2 depends
   * Convert scripts to python3. Closes: #936277
   * Ack old bug fixed in previous release: Closes: #755181
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