[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a526433b by Andreas Tille at 2021-02-11T01:42:23+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Feb 2021 13:42:03 + +Last-Update: Thu, 11 Feb 2021 01:42:04 + Source| Vote | Tasks | Tags ---++-+-- = outdated_med-packages.txt = The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a526433b2ee2312ff252ad318c442c8495cdc309 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a526433b2ee2312ff252ad318c442c8495cdc309 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-parasail] Pushed new tag upstream/1.2.4
Nilesh Patra pushed new tag upstream/1.2.4 at Debian Med / python-parasail -- View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/tree/upstream/1.2.4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-parasail] Pushed new tag debian/1.2.4-1_0exp0
Nilesh Patra pushed new tag debian/1.2.4-1_0exp0 at Debian Med / python-parasail -- View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/tree/debian/1.2.4-1_0exp0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-parasail][upstream] New upstream version 1.2.4
Nilesh Patra pushed to branch upstream at Debian Med / python-parasail
Commits:
3fe87121 by Nilesh Patra at 2021-02-10T23:06:12+05:30
New upstream version 1.2.4
- - - - -
3 changed files:
- .travis.yml
- CHANGELOG.rst
- parasail/__init__.py
Changes:
=
.travis.yml
=
@@ -13,25 +13,27 @@ jobs:
before_install:
- choco install python --version 3.7.5
- export PATH="/c/Python37:/c/Python37/Scripts:$PATH"
+# make sure it's on PATH as 'python3'
+- ln -s /c/Python37/python.exe /c/Python37/python3.exe
-# all three OSes agree about 'pip3'
-# 'python' points to Python 2.7 on macOS but points to Python 3.7 on Linux and
Windows
-# 'python3' is a 'command not found' error on Windows but 'py' works on
Windows only
+# cibuildwheel creates a virtualenv for the test
+# it seems to use "python" not "python3" for testing
+# while the rest of the build etc should use python3
env:
global:
+- CIBW_BUILD_VERBOSITY=3
- CIBW_BUILD="cp37-*"
-- CIBW_TEST_COMMAND_MACOS="python3 -m unittest discover {project}/tests"
-- CIBW_TEST_COMMAND_LINUX="python3 -m unittest discover {project}/tests"
-- CIBW_TEST_COMMAND_WINDOWS="python -m unittest discover {project}/tests"
+- CIBW_TEST_COMMAND="python -m unittest discover {project}/tests"
- TWINE_USERNAME=__token__
install:
- - pip3 install twine cibuildwheel==1.6.4 wheel
- - wget -O parasail-master.zip
https://github.com/jeffdaily/parasail/archive/master.zip
+ - python3 -m pip install cibuildwheel==1.6.4 wheel
+ - python3 -m pip install --upgrade --upgrade-strategy eager twine
script:
- - cibuildwheel --output-dir wheelhouse
- - if [[ "$TRAVIS_OS_NAME" = "windows" ]]; then python setup.py sdist -d
wheelhouse; fi
+ - python3 -m cibuildwheel --output-dir wheelhouse
+ - if [[ "$TRAVIS_OS_NAME" = "windows" ]]; then python3 setup.py sdist -d
wheelhouse; fi
after_success:
- - if [[ $TRAVIS_TAG ]]; then python3 -m twine upload wheelhouse/* || python
-m twine upload wheelhouse/* ; fi
+ - if [[ $TRAVIS_TAG ]]; then python3 -m pip install --upgrade
--upgrade-strategy eager twine ; fi
+ - if [[ $TRAVIS_TAG ]]; then python3 -m twine upload wheelhouse/* ; fi
=
CHANGELOG.rst
=
@@ -10,6 +10,11 @@ Unreleased_
---
The Unreleased section will be empty for tagged releases. Unreleased
functionality appears in the develop branch.
+--
+1.2.4 - 2021-02-06
+--
+- Fix #60 Missing wheels on PyPI
+
---
1.2.3_ - 2020-12-16
---
@@ -159,6 +164,7 @@ The Unreleased section will be empty for tagged releases.
Unreleased functionali
First tagged release. The 'master' branch always represents the latest stable
code. Tagged releases correspond to pypi releases.
.. _Unreleased:
https://github.com/jeffdaily/parasail-python/compare/v1.2.3...master
+.. _1.2.4:
https://github.com/jeffdaily/parasail-python/compare/v1.2.3...v1.2.4
.. _1.2.3:
https://github.com/jeffdaily/parasail-python/compare/v1.2.2...v1.2.3
.. _1.2.2:
https://github.com/jeffdaily/parasail-python/compare/v1.2.1...v1.2.2
.. _1.2.1: https://github.com/jeffdaily/parasail-python/compare/v1.2...v1.2.1
=
parasail/__init__.py
=
@@ -6,7 +6,7 @@ import sys
import numpy
-__version__ = "1.2.3"
+__version__ = "1.2.4"
__title__ = "parasail"
__description__ = "pairwise sequence alignment library"
__uri__ = "https://github.com/jeffdaily/parasail-python;
View it on GitLab:
https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105
--
View it on GitLab:
https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105
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[med-svn] [Git][med-team/python-parasail][pristine-tar] pristine-tar data for python-parasail_1.2.4.orig.tar.gz
Nilesh Patra pushed to branch pristine-tar at Debian Med / python-parasail Commits: 8ed265cf by Nilesh Patra at 2021-02-10T23:06:13+05:30 pristine-tar data for python-parasail_1.2.4.orig.tar.gz - - - - - 2 changed files: - + python-parasail_1.2.4.orig.tar.gz.delta - + python-parasail_1.2.4.orig.tar.gz.id Changes: = python-parasail_1.2.4.orig.tar.gz.delta = Binary files /dev/null and b/python-parasail_1.2.4.orig.tar.gz.delta differ = python-parasail_1.2.4.orig.tar.gz.id = @@ -0,0 +1 @@ +2d51abf8de16f87a5034af439cc9317224ca80f2 View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/commit/8ed265cfb5ce73369fbd8a53c9f6d2ada291e68d -- View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/commit/8ed265cfb5ce73369fbd8a53c9f6d2ada291e68d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-parasail] Pushed new branch debian/experimental
Nilesh Patra pushed new branch debian/experimental at Debian Med / python-parasail -- View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/tree/debian/experimental You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.2.6.orig.tar.gz
Steffen Möller pushed to branch pristine-tar at Debian Med / bcbio Commits: 30dab8f6 by Steffen Moeller at 2021-02-10T16:25:03+01:00 pristine-tar data for bcbio_1.2.6.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.2.6.orig.tar.gz.delta - + bcbio_1.2.6.orig.tar.gz.id Changes: = bcbio_1.2.6.orig.tar.gz.delta = Binary files /dev/null and b/bcbio_1.2.6.orig.tar.gz.delta differ = bcbio_1.2.6.orig.tar.gz.id = @@ -0,0 +1 @@ +303c55cd881dea2d942a1cce94cd8b1f273f5212 View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/30dab8f685fff80b5425231b9517b52ec8ea920f -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/30dab8f685fff80b5425231b9517b52ec8ea920f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.6
Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 5c8848ab by Steffen Moeller at 2021-02-10T16:24:07+01:00 New upstream version 1.2.6 - - - - - a4e8977a by Steffen Moeller at 2021-02-10T16:25:03+01:00 Update upstream source from tag upstream/1.2.6 Update to upstream version 1.2.6 with Debian dir 302e32dd03f2c29d4ea15076af5ae9170dc10e54 - - - - - 68261fcd by Steffen Moeller at 2021-02-10T18:29:23+01:00 Upstream accepted patch, added dep on libhts-dev The .so is attempted to be loaded. - - - - - 30 changed files: - HISTORY.md - MANIFEST.in - README.md - bcbio/dragen/dragen.py - bcbio/pipeline/main.py - bcbio/pipeline/rnaseq.py - bcbio/pipeline/run_info.py - bcbio/provenance/programs.py - bcbio/variation/annotation.py - bcbio/variation/vardict.py - config/examples/rnaseq-seqc-getdata.sh - config/examples/rnaseq-seqc.yaml - config/examples/seqc.csv - config/genomes/GRCh37-resources.yaml - config/genomes/hg19-resources.yaml - config/genomes/hg38-resources.yaml - + config/templates/purecn_ton.yaml - config/vcfanno/GRCh37-gemini.conf - config/vcfanno/hg38-gemini.conf - config/vcfanno/somatic.conf - debian/changelog - debian/control - − debian/patches/include_tests - debian/patches/series - docs/contents/bulk_rnaseq.md - docs/contents/configuration.md - docs/contents/installation.md - docs/contents/purecn.md - requirements-conda.txt - requirements.txt The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/bbe5fb17531f381785724476861b81cf9d2eba99...68261fcdb35b8f5d078023944114bc5b465cb884 -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/bbe5fb17531f381785724476861b81cf9d2eba99...68261fcdb35b8f5d078023944114bc5b465cb884 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
66208839 by Andreas Tille at 2021-02-10T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=
debian-med-tests.txt
=
@@ -1,17 +1,17 @@
-Last-Update: Wed, 10 Feb 2021 01:42:04 +
+Last-Update: Wed, 10 Feb 2021 13:42:03 +
Source| Vote | Tasks
| Tags
---++-+--
- dcmtk |181 | {imaging,covid-19}
|
- orthanc |100 | {practice,imaging,covid-19}
|
- orthanc-wsi | 51 |
{laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 35 | {imaging}
|
+ dcmtk |179 | {imaging,covid-19}
|
+ orthanc | 99 | {practice,imaging,covid-19}
|
+ orthanc-wsi | 50 |
{laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 34 | {imaging}
|
dicom3tools | 34 | {imaging}
|
- gdcm | 29 | {imaging-dev}
|
- htsjdk| 26 | {bio-dev}
|
+ gdcm | 30 | {imaging-dev}
|
+ htsjdk| 25 | {bio-dev}
|
dicomscope| 24 | {imaging}
|
- dcm2niix | 21 | {imaging}
|
gdcm | 21 | {imaging,covid-19}
|
+ dcm2niix | 20 | {imaging}
|
nifticlib | 18 | {imaging}
|
odin | 18 | {imaging,imaging-dev}
|
dicomnifti| 16 | {imaging}
|
@@ -19,22 +19,22 @@ Last-Update: Wed, 10 Feb 2021 01:42:04 +
minc-tools| 15 | {imaging}
|
plastimatch | 14 | {imaging}
|
pixelmed | 12 | {imaging}
|
+ adun.app | 11 | {bio}
|
gdcm | 11 | {imaging-dev}
|
king | 11 | {imaging,typesetting}
|
+ ngs-sdk | 11 | {bio-dev}
|
openslide | 11 | {imaging}
|
- adun.app | 10 | {bio}
|
insighttoolkit4 | 10 | {imaging-dev}
|
invesalius| 10 | {imaging}
|
- ngs-sdk | 10 | {bio-dev}
|
nifti2dicom | 10 | {imaging}
|
jebl2 | 9 | {bio-dev}
|
+ vtk-dicom | 9 | {imaging}
|
biojava-live | 8 | {bio-dev}
|
ea-utils | 8 | {bio}
|
mia | 8 | {imaging}
|
mipe | 8 | {bio,cloud}
|
ngs-sdk | 8 | {bio-dev}
|
orthanc-webviewer | 8 | {imaging}
|
- vtk-dicom | 8 | {imaging}
[med-svn] [Git][med-team/toil][master] debian/patches/test_with_less_memory: reduce default resource reqs for 32bit systems
Michael R. Crusoe pushed to branch master at Debian Med / toil
Commits:
d25e0f36 by Michael R. Crusoe at 2021-02-10T11:36:53+01:00
debian/patches/test_with_less_memory: reduce default resource reqs for 32bit
systems
- - - - -
5 changed files:
- debian/changelog
- debian/patches/series
- + debian/patches/test_with_less_memory
- debian/rules
- debian/tests/run-unit-tests
Changes:
=
debian/changelog
=
@@ -1,3 +1,10 @@
+toil (5.2.0-5) unstable; urgency=high
+
+ * debian/patches/test_with_less_memory: reduce default resource reqs
+for 32bit systems
+
+ -- Michael R. Crusoe Wed, 10 Feb 2021 11:24:49 +0100
+
toil (5.2.0-4) unstable; urgency=high
* autopkgtests: skip some s3 related tests.
=
debian/patches/series
=
@@ -7,3 +7,4 @@ soften-pydocker-dep
python3
proxy
ship_tests
+test_with_less_memory
=
debian/patches/test_with_less_memory
=
@@ -0,0 +1,30 @@
+Author: Michael R. Crusoe
+Description: reduce default resource usage on 32bit systems
+Forwarded: not-needed
+--- toil.orig/src/toil/common.py
toil/src/toil/common.py
+@@ -21,6 +21,7 @@
+ import tempfile
+ import time
+ import uuid
++import platform
+
+ from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter
+ from typing import Optional, Callable, Any, List
+@@ -96,9 +97,14 @@
+ self.statePollingWait = 1 # Number of seconds to wait before
querying job state
+
+ # Resource requirements
+-self.defaultMemory = 2147483648
++is_64bits = sys.maxsize > 2**32
++if is_64bits:
++self.defaultMemory = 2147483648
++self.defaultDisk = 2147483648
++else:
++self.defaultMemory = 1610612736
++self.defaultDisk = 1610612736
+ self.defaultCores = 1
+-self.defaultDisk = 2147483648
+ self.readGlobalFileMutableByDefault = False
+ self.defaultPreemptable = False
+ self.maxCores = sys.maxsize
=
debian/rules
=
@@ -23,7 +23,7 @@ override_dh_auto_install:
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
PYBUILD_SYSTEM=custom \
- PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py
develop --user && PYTHONPATH={dir}/src:$$PYTHONPATH
PATH={home_dir}/.local/bin/:$$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True
{interpreter} -m pytest -vv -W ignore --ignore
src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore
src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py -k "not
test_bioconda and not test_run_conformance and not testImportFtpFile and not
ToilWdlIntegrationTest and not SortTest" {dir}/src/toil/test' \
+ PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py
develop --user && PYTHONPATH={dir}/src:$$PYTHONPATH
PATH={home_dir}/.local/bin/:$$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True
{interpreter} -m pytest -vv -W ignore --ignore
src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore
src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py -k "not
test_bioconda and not test_run_conformance and not testImportFtpFile and not
ToilWdlIntegrationTest and not SortTest and not testCwlexample"
{dir}/src/toil/test' \
dh_auto_test
endif
=
debian/tests/run-unit-tests
=
@@ -10,4 +10,4 @@ export LC_ALL=C.UTF-8
#
# cd "${AUTOPKGTEST_TMP}"
-TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3 -m pytest -vv -W ignore -k
"not test_bioconda and not AWSJobStoreTest and not awsjobstoretest and not
testCwlexample and not CWLv10Test and not CWLv11Test and not CWLv12Test"
--ignore-glob '*cwlTest*' --pyargs toil.test
+TMP=AUTOPKGTEST_TMP TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3 -m
pytest -vv -W ignore -k "not test_bioconda and not AWSJobStoreTest and not
awsjobstoretest and not testCwlexample and not CWLv10Test and not CWLv11Test
and not CWLv12Test" --ignore-glob '*cwlTest*' --pyargs toil.test
View it on GitLab:
https://salsa.debian.org/med-team/toil/-/commit/d25e0f367a8400830377dedebe4ae4fa28e1f75b
--
View it on GitLab:
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[med-svn] [Git][med-team/toil] Pushed new tag debian/5.2.0-5
Michael R. Crusoe pushed new tag debian/5.2.0-5 at Debian Med / toil -- View it on GitLab: https://salsa.debian.org/med-team/toil/-/tree/debian/5.2.0-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/freebayes] Pushed new tag upstream/1.3.5
Andreas Tille pushed new tag upstream/1.3.5 at Debian Med / freebayes -- View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/tree/upstream/1.3.5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/freebayes] Pushed new tag debian/1.3.5-1
Andreas Tille pushed new tag debian/1.3.5-1 at Debian Med / freebayes -- View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/tree/debian/1.3.5-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/freebayes][upstream] New upstream version 1.3.5
Andreas Tille pushed to branch upstream at Debian Med / freebayes Commits: 59b38a4b by Andreas Tille at 2021-02-10T10:45:24+01:00 New upstream version 1.3.5 - - - - - 30 changed files: - + .github/workflows/support-tracker-bot.yaml - .gitignore - .gitmodules - .travis.yml - CMakeLists.txt → CMakeLists-do-not-use.txt - − CONTRIBUTORS - README.md - RELEASE-NOTES.md - guix.scm - meson.build - python/allelebayes.py - python/dirichlet.py - python/hwe.py - python/multiset.py - scripts/coverage_to_regions.py - scripts/fasta_generate_regions.py - src/Allele.h - src/AlleleParser.cpp - src/AlleleParser.h - − src/BGZF.cpp - − src/BGZF.h - src/BedReader.cpp - src/BedReader.h - src/Bias.cpp - src/Bias.h - src/CNV.h - src/Contamination.cpp - src/Contamination.h - src/DataLikelihood.h - src/Dirichlet.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/commit/59b38a4b67c00a301caa0b3bd76569b494c88075 -- View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/commit/59b38a4b67c00a301caa0b3bd76569b494c88075 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/freebayes][master] 6 commits: New upstream version 1.3.5
Andreas Tille pushed to branch master at Debian Med / freebayes Commits: 59b38a4b by Andreas Tille at 2021-02-10T10:45:24+01:00 New upstream version 1.3.5 - - - - - cc1983bc by Andreas Tille at 2021-02-10T10:45:24+01:00 routine-update: New upstream version - - - - - 359e7844 by Andreas Tille at 2021-02-10T10:45:31+01:00 Update upstream source from tag upstream/1.3.5 Update to upstream version 1.3.5 with Debian dir fcad4b4ac3fd5b3d645ed378bc0da765ddc36f7a - - - - - 0684fc3d by Andreas Tille at 2021-02-10T10:45:38+01:00 routine-update: watch file standard 4 - - - - - bcd8a38b by Andreas Tille at 2021-02-10T11:28:02+01:00 Upstream took over patch - - - - - 0c400152 by Andreas Tille at 2021-02-10T11:30:38+01:00 Upload to unstable - - - - - 30 changed files: - + .github/workflows/support-tracker-bot.yaml - .gitignore - .gitmodules - .travis.yml - CMakeLists.txt → CMakeLists-do-not-use.txt - − CONTRIBUTORS - README.md - RELEASE-NOTES.md - debian/changelog - − debian/patches/libraries.patch - − debian/patches/series - debian/watch - guix.scm - meson.build - python/allelebayes.py - python/dirichlet.py - python/hwe.py - python/multiset.py - scripts/coverage_to_regions.py - scripts/fasta_generate_regions.py - src/Allele.h - src/AlleleParser.cpp - src/AlleleParser.h - − src/BGZF.cpp - − src/BGZF.h - src/BedReader.cpp - src/BedReader.h - src/Bias.cpp - src/Bias.h - src/CNV.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/2d3f8da10e24e7a57382ec40741ab72c7c397185...0c400152f2618c285111e0809210b1c034d5e32f -- View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/2d3f8da10e24e7a57382ec40741ab72c7c397185...0c400152f2618c285111e0809210b1c034d5e32f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/freebayes][pristine-tar] pristine-tar data for freebayes_1.3.5.orig.tar.gz
Andreas Tille pushed to branch pristine-tar at Debian Med / freebayes Commits: 6ea70db3 by Andreas Tille at 2021-02-10T10:45:31+01:00 pristine-tar data for freebayes_1.3.5.orig.tar.gz - - - - - 2 changed files: - + freebayes_1.3.5.orig.tar.gz.delta - + freebayes_1.3.5.orig.tar.gz.id Changes: = freebayes_1.3.5.orig.tar.gz.delta = Binary files /dev/null and b/freebayes_1.3.5.orig.tar.gz.delta differ = freebayes_1.3.5.orig.tar.gz.id = @@ -0,0 +1 @@ +5d7c7e521aaa4a99e2ec0f0bf96f7889a4763246 View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/commit/6ea70db39c91427d744e8c22197de4f3d1042cb8 -- View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/commit/6ea70db39c91427d744e8c22197de4f3d1042cb8 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
