[med-svn] [Git][med-team/bioawk] Pushed new tag upstream/1.0
Steffen Möller pushed new tag upstream/1.0 at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/upstream/1.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bioawk] Deleted tag upstream/1.0
Steffen Möller deleted tag upstream/1.0 at Debian Med / bioawk -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bioawk] Pushed new branch pristine-tar
Steffen Möller pushed new branch pristine-tar at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/pristine-tar You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bioawk][upstream] New upstream version 1.0
Steffen Möller pushed to branch upstream at Debian Med / bioawk Commits: ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00 New upstream version 1.0 - - - - - 0 changed files: Changes: View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/commit/ab0ab07f83bbece56fafb30bdcc04fde2c89b51a -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/commit/ab0ab07f83bbece56fafb30bdcc04fde2c89b51a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bioawk][master] 3 commits: Optics - thanks Juhani
Steffen Möller pushed to branch master at Debian Med / bioawk
Commits:
58f9225a by Steffen Möller at 2021-02-12T02:45:25+01:00
Optics - thanks Juhani
- - - - -
ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00
New upstream version 1.0
- - - - -
f8088b37 by Steffen Möller at 2021-02-12T02:46:31+01:00
Update upstream source from tag upstream/1.0
Update to upstream version 1.0
with Debian dir ff461e435cde85e6997d8ae1388d4fba0e5c48f5
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -1,4 +1,4 @@
-bioawk (1.0-1) UNRELEASED; urgency=medium
+bioawk (1.0-1) unstable; urgency=medium
* Initial release (Closes: #982544)
=
debian/control
=
@@ -2,7 +2,8 @@ Source: bioawk
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team
-Uploaders: Steffen Moeller , Nilesh Patra
+Uploaders: Steffen Moeller ,
+ Nilesh Patra
Build-Depends: debhelper-compat (= 13),
bison,
libz-dev
@@ -16,7 +17,7 @@ Package: bioawk
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: extension of awk for biological sequence analysis
- Bioawk is an extension to [Brian Kernighan's awk], adding the support of
+ Bioawk is an extension to Brian Kernighan's awk, adding the support of
several common biological data formats, including optionally gzip'ed BED, GFF,
SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a
few built-in functions and an command line option to use TAB as the
View it on GitLab:
https://salsa.debian.org/med-team/bioawk/-/compare/2e7f94245e48ec22c99bd7e256dc9428ea0b341c...f8088b371c4b2bc9fd0123d11f80b35c64b73a7f
--
View it on GitLab:
https://salsa.debian.org/med-team/bioawk/-/compare/2e7f94245e48ec22c99bd7e256dc9428ea0b341c...f8088b371c4b2bc9fd0123d11f80b35c64b73a7f
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: ba7125a2 by Andreas Tille at 2021-02-12T01:42:22+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Feb 2021 13:42:03 + +Last-Update: Fri, 12 Feb 2021 01:42:03 + Source| Vote | Tasks | Tags ---++-+-- = outdated_med-packages.txt = The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ba7125a28700776ea4467454576264b00d33a881 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ba7125a28700776ea4467454576264b00d33a881 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-ruffus] Pushed new tag debian/2.8.4-2
Shayan Doust pushed new tag debian/2.8.4-2 at Debian Med / python-ruffus -- View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/tree/debian/2.8.4-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-ruffus][master] Upload to unstable
Shayan Doust pushed to branch master at Debian Med / python-ruffus Commits: b4dc2e14 by Shayan Doust at 2021-02-11T20:02:38+00:00 Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -1,4 +1,4 @@ -python-ruffus (2.8.4-2) UNRELEASED; urgency=medium +python-ruffus (2.8.4-2) unstable; urgency=high * Team upload. * Standards-Version: 4.5.1 (routine-update) View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/commit/b4dc2e142e5ee16c82ddf592989efc93dff49676 -- View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/commit/b4dc2e142e5ee16c82ddf592989efc93dff49676 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-ruffus][master] 2 commits: Set Multi-Arch as foreign
Shayan Doust pushed to branch master at Debian Med / python-ruffus
Commits:
b86f5af5 by Shayan Doust at 2021-02-11T19:42:18+00:00
Set Multi-Arch as foreign
(Closes: #978394)
- - - - -
f9aad77b by Shayan Doust at 2021-02-11T19:52:41+00:00
Update changelog
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -5,8 +5,9 @@ python-ruffus (2.8.4-2) UNRELEASED; urgency=medium
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* watch file standard 4 (routine-update)
+ * Set Multi-Arch as foreign (Closes: #978394)
- -- Shayan Doust Thu, 11 Feb 2021 19:39:03 +
+ -- Shayan Doust Thu, 11 Feb 2021 19:52:08 +
python-ruffus (2.8.4-1) unstable; urgency=medium
=
debian/control
=
@@ -20,6 +20,7 @@ Rules-Requires-Root: no
Package: python3-ruffus
Architecture: all
+Multi-Arch: foreign
Depends: ${misc:Depends},
${python3:Depends},
graphviz
View it on GitLab:
https://salsa.debian.org/med-team/python-ruffus/-/compare/75e15ce7404a072c881c886fa8fb947167e2e0df...f9aad77b084361a3579c5b8c4b572573eeb32ca8
--
View it on GitLab:
https://salsa.debian.org/med-team/python-ruffus/-/compare/75e15ce7404a072c881c886fa8fb947167e2e0df...f9aad77b084361a3579c5b8c4b572573eeb32ca8
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[med-svn] [Git][med-team/python-ruffus][master] 5 commits: routine-update: Standards-Version: 4.5.1
Shayan Doust pushed to branch master at Debian Med / python-ruffus Commits: 63b3efd7 by Shayan Doust at 2021-02-11T19:38:40+00:00 routine-update: Standards-Version: 4.5.1 - - - - - df6174aa by Shayan Doust at 2021-02-11T19:38:43+00:00 routine-update: Add salsa-ci file - - - - - 81fc2888 by Shayan Doust at 2021-02-11T19:38:44+00:00 routine-update: Rules-Requires-Root: no - - - - - f7a8e3e3 by Shayan Doust at 2021-02-11T19:39:02+00:00 routine-update: watch file standard 4 - - - - - 75e15ce7 by Shayan Doust at 2021-02-11T19:39:32+00:00 Set to UNRELEASED for now - - - - - 4 changed files: - debian/changelog - debian/control - + debian/salsa-ci.yml - debian/watch Changes: = debian/changelog = @@ -1,3 +1,13 @@ +python-ruffus (2.8.4-2) UNRELEASED; urgency=medium + + * Team upload. + * Standards-Version: 4.5.1 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * watch file standard 4 (routine-update) + + -- Shayan Doust Thu, 11 Feb 2021 19:39:03 + + python-ruffus (2.8.4-1) unstable; urgency=medium * Team upload. = debian/control = @@ -12,10 +12,11 @@ Build-Depends: debhelper-compat (= 13), python3-sphinx-rtd-theme, python3-pytest, graphviz -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-ruffus Vcs-Git: https://salsa.debian.org/med-team/python-ruffus.git Homepage: http://www.ruffus.org.uk/ +Rules-Requires-Root: no Package: python3-ruffus Architecture: all = debian/salsa-ci.yml = @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml = debian/watch = @@ -1,4 +1,4 @@ -version=3 +version=4 opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g" \ https://github.com/bunbun/ruffus/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/compare/50e7a92a2cd70b0c7dca55fcfb58319c02911993...75e15ce7404a072c881c886fa8fb947167e2e0df -- View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/compare/50e7a92a2cd70b0c7dca55fcfb58319c02911993...75e15ce7404a072c881c886fa8fb947167e2e0df You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mricron] Pushed new tag debian/1.0.20190902+dfsg-2
Graham Inggs pushed new tag debian/1.0.20190902+dfsg-2 at Debian Med / mricron -- View it on GitLab: https://salsa.debian.org/med-team/mricron/-/tree/debian/1.0.20190902+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mricron][master] Prepare for upload to unstable
Graham Inggs pushed to branch master at Debian Med / mricron
Commits:
32d65a3b by Graham Inggs at 2021-02-11T20:36:45+02:00
Prepare for upload to unstable
- - - - -
3 changed files:
- debian/changelog
- + debian/patches/64bit.patch
- debian/patches/series
Changes:
=
debian/changelog
=
@@ -1,3 +1,11 @@
+mricron (1.0.20190902+dfsg-2) unstable; urgency=medium
+
+ * Team upload
+ * Fix build on !amd64 64-bit architectures, thanks
+Juhani Numminen (Closes: #982516)
+
+ -- Graham Inggs Thu, 11 Feb 2021 18:35:17 +
+
mricron (1.0.20190902+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
=
debian/patches/64bit.patch
=
@@ -0,0 +1,17 @@
+Description: Fix build on !amd64 64-bit architectures
+Bug-Debian: https://bugs.debian.org/982516
+Forwarded: no
+Author: Graham Inggs
+Last-Update: 2021-02-11
+
+--- a/RenderThds.pas
b/RenderThds.pas
+@@ -65,7 +65,7 @@
+
+ var
+ {$IFDEF UNIX}
+- {$ifdef cpux86_64}
++ {$ifdef CPU64}
+ CritSect : QWord;
+ {$else}
+ CritSect : LongWord;
=
debian/patches/series
=
@@ -2,3 +2,4 @@ lazarus_modern
debian_paths
stricter_fpc.patch
fpc-3.2.patch
+64bit.patch
View it on GitLab:
https://salsa.debian.org/med-team/mricron/-/commit/32d65a3b4c3e9056c22325a72a99fb89e0aa76eb
--
View it on GitLab:
https://salsa.debian.org/med-team/mricron/-/commit/32d65a3b4c3e9056c22325a72a99fb89e0aa76eb
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[med-svn] [Debian Wiki] Update of "DebianMed/SoftwareLiberation" by MichaelCrusoe
Dear Wiki user, You have subscribed to a wiki page or wiki category on "Debian Wiki" for change notification. The "DebianMed/SoftwareLiberation" page has been changed by MichaelCrusoe: https://wiki.debian.org/DebianMed/SoftwareLiberation?action=diff=72=73 Comment: more freedom! ||[[http://research-pub.gene.com/gmap/|GMAP]] ||[[https://lists.debian.org/debian-med/2017/09/msg00013.html|Debian Med list]] ||License changed to Apache-2.0||2020-04-11|| ||[[http://tandem.bu.edu/trf/trf.html|trf]] ||[[https://github.com/Benson-Genomics-Lab/TRF|Free code at Github]] ||AGPL || 2020-06-28 || ||[[https://github.com/nanoporetech/vbz_compression/|vbz-compression]] ||[[https://github.com/nanoporetech/vbz_compression|Free code at Github]] ||MPL-2.0 || 2020-06-19 || + ||[[https://github.com/nanoporetech/minknow_api|minknow_api]] ||[[https://github.com/nanoporetech/minknow_api/issues/12|Issue on GitHub]] || [[https://github.com/nanoporetech/minknow_api/commit/50955d34552be129ea5f6aeef1262b8007cf7ee1|MPL-2.0]] || 2021-02-11 || == Discussion in progress == ||'''Software''' ||'''Debian Med contact''' ||'''Status upstream''' || '''Date''' || @@ -49, +50 @@ ||[[http://www.arb-home.de/|libarb]] ||[[https://lists.debian.org/debian-med/2019/04/msg00041.html|Debian Med list]] ||No answer yet||2019-04-24|| ||[[https://github.com/aparapi/aparapi/|aparapi]] ||[[https://github.com/aparapi/aparapi/issues/50|Github issue]][[https://gitter.im/Syncleus/aparapi|Gitter discussion]] ||[[https://bugs.debian.org/963630#10|Apache-2.0 license confirmed]] but further discussions needed as additional restrictions in ATTRIBUTIONS.md may contaminate other software||2020-11-03|| + == Todo == [[http://meme-suite.org/tools/meme|Meme]] ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bioawk][master] 2 commits: Do not install maketabs
Nilesh Patra pushed to branch master at Debian Med / bioawk Commits: e75dd12d by Nilesh Patra at 2021-02-11T23:02:03+05:30 Do not install maketabs - - - - - 2e7f9424 by Nilesh Patra at 2021-02-11T23:03:44+05:30 Add myself to uploaders - - - - - 2 changed files: - debian/bioawk.install - debian/control Changes: = debian/bioawk.install = @@ -1,2 +1 @@ bioawk usr/bin -maketabusr/bin = debian/control = @@ -2,7 +2,7 @@ Source: bioawk Section: science Priority: optional Maintainer: Debian Med Packaging Team -Uploaders: Steffen Moeller +Uploaders: Steffen Moeller , Nilesh Patra Build-Depends: debhelper-compat (= 13), bison, libz-dev View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/compare/4e0b247f0e6507e51726f159688c89275730fd97...2e7f94245e48ec22c99bd7e256dc9428ea0b341c -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/compare/4e0b247f0e6507e51726f159688c89275730fd97...2e7f94245e48ec22c99bd7e256dc9428ea0b341c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/metastudent-data] Pushed new tag debian/2.0.1-6
Andreas Tille pushed new tag debian/2.0.1-6 at Debian Med / metastudent-data -- View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/tree/debian/2.0.1-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/metastudent-data][master] 2 commits: Enable BLASTDB version 5 format
Andreas Tille pushed to branch master at Debian Med / metastudent-data Commits: d72e7e62 by Andreas Tille at 2021-02-11T15:08:16+01:00 Enable BLASTDB version 5 format - - - - - 41ba8508 by Andreas Tille at 2021-02-11T15:30:09+01:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/permit_blastdb5_data_files.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,11 @@ +metastudent-data (2.0.1-6) unstable; urgency=medium + + * Team upload. + * Enable BLASTDB version 5 format +Closes: #981293 + + -- Andreas Tille Thu, 11 Feb 2021 15:09:01 +0100 + metastudent-data (2.0.1-5) unstable; urgency=medium * Team upload. = debian/patches/permit_blastdb5_data_files.patch = @@ -0,0 +1,16 @@ +Description: Enable BLASTDB version 5 format +Bug-Debian: https://bugs.debian.org/981293 +Author: Andreas Tille +Last-Update: Thu, 11 Feb 2021 15:06:30 +0100 + +--- a/Makefile.am b/Makefile.am +@@ -14,7 +14,7 @@ noinst_DATA = $(BLASTDB) + + install-data-local: + mkdir -p "$(DESTDIR)$(pkgdatadir)" && \ +- rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "$(srcdir)/$(DATASET)" "$(DESTDIR)$(pkgdatadir)/" && \ ++ rsync -rt --include '*.txt' --include '*.dat' --include '*.p??' --exclude '*.*' "$(srcdir)/$(DATASET)" "$(DESTDIR)$(pkgdatadir)/" && \ + chmod -R a+rX "$(DESTDIR)$(pkgdatadir)" && \ + chmod -R u+rwX "$(DESTDIR)$(pkgdatadir)" + = debian/patches/series = @@ -1 +1,2 @@ 01_formatdb_fix_prot_dbtype.patch +permit_blastdb5_data_files.patch View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/ab16ac27a75d003df86d5606b46a9dbb683dab16...41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73 -- View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/ab16ac27a75d003df86d5606b46a9dbb683dab16...41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/cat-bat][upstream] New upstream version 5.2.3
Nilesh Patra pushed to branch upstream at Debian Med / cat-bat
Commits:
9eb95c03 by Nilesh Patra at 2021-02-11T19:05:36+05:30
New upstream version 5.2.3
- - - - -
4 changed files:
- CAT_pack/about.py
- CAT_pack/add_names.py
- CAT_pack/prepare.py
- CHANGELOG.md
Changes:
=
CAT_pack/about.py
=
@@ -1,5 +1,5 @@
#!/usr/bin/env python3
__author__ = 'F. A. Bastiaan von Meijenfeldt'
-__version__ = '5.2.2'
-__date__ = '15 January, 2021'
+__version__ = '5.2.3'
+__date__ = '10 February, 2021'
=
CAT_pack/add_names.py
=
@@ -127,8 +127,7 @@ def run():
continue
-if (line[1].startswith('no taxid found') or
-line[2].startswith('no taxid found')):
+if any([c.startswith('no taxid found') for c in line[2:4]]):
# ORF has database hits but the accession number is not found
# in the taxonomy files.
outf1.write('{0}\n'.format('\t'.join(line)))
=
CAT_pack/prepare.py
=
@@ -106,7 +106,7 @@ def download_taxonomy_files(taxonomy_folder, date,
log_file, quiet):
'taxonomy folder.'.format(url))
shared.give_user_feedback(message, log_file, quiet)
-url = 'ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz'
+url = '{0}taxdump.tar.gz'.format(url)
tmp_taxonomy_file = '{0}{1}.taxdump.tar.gz'.format(taxonomy_folder, date)
try:
urllib.request.urlretrieve(url, tmp_taxonomy_file)
@@ -153,8 +153,7 @@ def download_prot_accession2taxid_file(
url)
shared.give_user_feedback(message, log_file, quiet)
-url = ('ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/'
-'prot.accession2taxid.FULL.gz')
+url = '{0}prot.accession2taxid.FULL.gz'.format(url)
try:
urllib.request.urlretrieve(url, prot_accession2taxid_file)
except:
@@ -187,7 +186,7 @@ def download_nr(nr_file, log_file, quiet):
url)
shared.give_user_feedback(message, log_file, quiet)
-url = 'ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nr.gz'
+url = '{0}nr.gz'.format(url)
try:
urllib.request.urlretrieve(url, nr_file)
except:
=
CHANGELOG.md
=
@@ -1,5 +1,8 @@
# Changelog
+## 5.2.3
+Minor bug fix for `CAT add_names`.
+
## 5.2.2
We have added the DIAMOND specific `--no_self_hits` flag. We have also added
some extra checks and removed redundancy from the parser code. Databases
constructed by `CAT prepare` now have a slightly different naming scheme.
View it on GitLab:
https://salsa.debian.org/med-team/cat-bat/-/commit/9eb95c036fab37ced872b11389dfad262df3564b
--
View it on GitLab:
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[med-svn] [Git][med-team/cat-bat] Pushed new tag upstream/5.2.3
Nilesh Patra pushed new tag upstream/5.2.3 at Debian Med / cat-bat -- View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/tree/upstream/5.2.3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/cat-bat] Pushed new tag debian/5.2.3-1_0exp0
Nilesh Patra pushed new tag debian/5.2.3-1_0exp0 at Debian Med / cat-bat -- View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/tree/debian/5.2.3-1_0exp0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/cat-bat][pristine-tar] pristine-tar data for cat-bat_5.2.3.orig.tar.gz
Nilesh Patra pushed to branch pristine-tar at Debian Med / cat-bat Commits: 1452adec by Nilesh Patra at 2021-02-11T19:05:37+05:30 pristine-tar data for cat-bat_5.2.3.orig.tar.gz - - - - - 2 changed files: - + cat-bat_5.2.3.orig.tar.gz.delta - + cat-bat_5.2.3.orig.tar.gz.id Changes: = cat-bat_5.2.3.orig.tar.gz.delta = Binary files /dev/null and b/cat-bat_5.2.3.orig.tar.gz.delta differ = cat-bat_5.2.3.orig.tar.gz.id = @@ -0,0 +1 @@ +e9eaadc699b3e3606415fb6c9d217746fbc5b2c9 View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/commit/1452adeca95396eb8338443a6405f8a186c2f9a7 -- View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/commit/1452adeca95396eb8338443a6405f8a186c2f9a7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/cat-bat] Pushed new branch debian/experimental
Nilesh Patra pushed new branch debian/experimental at Debian Med / cat-bat -- View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/tree/debian/experimental You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/macsyfinder][master] Switch to arch: amd64 i386 due to unavailability of hmmer on other architectures.
Michael R. Crusoe pushed to branch master at Debian Med / macsyfinder
Commits:
ca8b06b9 by Michael R. Crusoe at 2021-02-11T12:16:57+01:00
Switch to arch: amd64 i386 due to unavailability of hmmer on other
architectures.
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -1,3 +1,11 @@
+macsyfinder (2.0~rc1-3) unstable; urgency=high
+
+ * Team upload.
+ * Switch to arch: amd64 i386 due to unavailability of hmmer on other
+architectures.
+
+ -- Michael R. Crusoe Thu, 11 Feb 2021 12:16:46 +0100
+
macsyfinder (2.0~rc1-2) unstable; urgency=high
* Team upload.
=
debian/control
=
@@ -26,7 +26,7 @@ Homepage: https://github.com/gem-pasteur/macsyfinder
Rules-Requires-Root: no
Package: macsyfinder
-Architecture: all
+Architecture: amd64 i386
Depends: ${python3:Depends},
${sphinxdoc:Depends},
${misc:Depends},
View it on GitLab:
https://salsa.debian.org/med-team/macsyfinder/-/commit/ca8b06b92a155e2d52d93104c996035e873aa2c3
--
View it on GitLab:
https://salsa.debian.org/med-team/macsyfinder/-/commit/ca8b06b92a155e2d52d93104c996035e873aa2c3
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[med-svn] [Git][med-team/macsyfinder] Pushed new tag debian/2.0_rc1-3
Michael R. Crusoe pushed new tag debian/2.0_rc1-3 at Debian Med / macsyfinder -- View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/tree/debian/2.0_rc1-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/conda] Pushed new tag upstream/4.9.2+dfsg
Steffen Möller pushed new tag upstream/4.9.2+dfsg at Debian Med / conda -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/tree/upstream/4.9.2+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/conda][pristine-tar] pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz
Steffen Möller pushed to branch pristine-tar at Debian Med / conda Commits: 0b91488c by Steffen Moeller at 2021-02-11T11:04:26+01:00 pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz - - - - - 2 changed files: - + conda_4.9.2+dfsg.orig.tar.xz.delta - + conda_4.9.2+dfsg.orig.tar.xz.id Changes: = conda_4.9.2+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/conda_4.9.2+dfsg.orig.tar.xz.delta differ = conda_4.9.2+dfsg.orig.tar.xz.id = @@ -0,0 +1 @@ +3bdab3b33de5950319d59c0bfef97223b21315ed View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/0b91488c0e8e11c84ccd3450cabdb5147461b4bd -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/0b91488c0e8e11c84ccd3450cabdb5147461b4bd You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/conda][master] 3 commits: New upstream version 4.9.2+dfsg
Steffen Möller pushed to branch master at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - bf91e4d6 by Steffen Moeller at 2021-02-11T11:04:27+01:00 Update upstream source from tag upstream/4.9.2+dfsg Update to upstream version 4.9.2+dfsg with Debian dir 33c9f304e945099b58cdd9c2d52edde81f68cfe3 - - - - - 27d4e538 by Steffen Moeller at 2021-02-11T11:17:16+01:00 Adjusting patches, a bit of clean-up - - - - - 29 changed files: - .cla-signers - .gitattributes - + .github/workflows/ci.yml - CHANGELOG.md - README.rst - − appveyor.yml - + ci/build_docs.sh - + ci/integration_tests.sh - + ci/unit_test.sh - − circle.yml - conda.recipe/meta.yaml - conda/_vendor/auxlib/compat.py - conda/_vendor/auxlib/configuration.py - conda/_vendor/auxlib/logz.py - conda/_vendor/cpuinfo.py - conda/_vendor/tqdm/LICENSE - conda/_vendor/tqdm/__init__.py - conda/_vendor/tqdm/__main__.py - conda/_vendor/tqdm/_main.py - conda/_vendor/tqdm/_monitor.py - conda/_vendor/tqdm/_tqdm.py - conda/_vendor/tqdm/_utils.py - conda/_vendor/tqdm/_version.py - + conda/_vendor/tqdm/asyncio.py - + conda/_vendor/tqdm/auto.py - + conda/_vendor/tqdm/cli.py - + conda/_vendor/tqdm/contrib/__init__.py - + conda/_vendor/tqdm/contrib/concurrent.py - + conda/_vendor/tqdm/contrib/itertools.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/conda/-/compare/6348f41fbdcf7db1d9564475e0750fb04532d726...27d4e5380513588023678412a3819c11696c2d4b -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/compare/6348f41fbdcf7db1d9564475e0750fb04532d726...27d4e5380513588023678412a3819c11696c2d4b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/conda][upstream] New upstream version 4.9.2+dfsg
Steffen Möller pushed to branch upstream at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - 29 changed files: - .cla-signers - .gitattributes - + .github/workflows/ci.yml - CHANGELOG.md - README.rst - − appveyor.yml - + ci/build_docs.sh - + ci/integration_tests.sh - + ci/unit_test.sh - − circle.yml - conda.recipe/meta.yaml - conda/_vendor/auxlib/compat.py - conda/_vendor/auxlib/configuration.py - conda/_vendor/auxlib/logz.py - conda/_vendor/cpuinfo.py - conda/_vendor/tqdm/LICENSE - conda/_vendor/tqdm/__init__.py - conda/_vendor/tqdm/__main__.py - conda/_vendor/tqdm/_main.py - conda/_vendor/tqdm/_monitor.py - conda/_vendor/tqdm/_tqdm.py - conda/_vendor/tqdm/_utils.py - conda/_vendor/tqdm/_version.py - + conda/_vendor/tqdm/asyncio.py - + conda/_vendor/tqdm/auto.py - + conda/_vendor/tqdm/cli.py - + conda/_vendor/tqdm/contrib/__init__.py - + conda/_vendor/tqdm/contrib/concurrent.py - + conda/_vendor/tqdm/contrib/itertools.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/b5385062a3f5368f9c38cb8cb7363c0365455989 -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/b5385062a3f5368f9c38cb8cb7363c0365455989 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/conda][master] New upstream version.
Steffen Möller pushed to branch master at Debian Med / conda Commits: 6348f41f by Steffen Moeller at 2021-02-11T11:01:12+01:00 New upstream version. - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,3 +1,9 @@ +conda (4.9.2+dfsg-1~rc0) UNRELEASED; urgency=medium + + * New upstream release. + + -- Steffen Moeller Wed, 10 Feb 2021 20:31:05 +0100 + conda (4.8.2+dfsg-1~rc0) experimental; urgency=medium * Initial release (Closes: #926416) = debian/control = @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 12), python3-mock , xonsh, conda-package-handling , -Standards-Version: 4.4.1 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/conda Vcs-Git: https://salsa.debian.org/med-team/conda.git Homepage: https://conda.io/ @@ -38,3 +38,10 @@ Description: OS-agnostic, system-level binary package manager and ecosystem used for other systems as well. Conda makes environments first-class citizens, making it easy to create independent environments even for C libraries. + . + This package needs a bit of extra love to smoothen its applicability in + a pure Debian environment, but all the functionality of the conda software + infrastructure is available - except for the typical miniconda seed. + This should not be required since Debian offers everything already, but + it is yet a bit edgy as in files expected below /usr that are not + existing - and should not be expected at that location in the first place. View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/6348f41fbdcf7db1d9564475e0750fb04532d726 -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/commit/6348f41fbdcf7db1d9564475e0750fb04532d726 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
