[Dspace-tech] Tomcat can't find DSpace
Hi, I am just in the process of installing DSpace 1.5 on RedHat EL 5 (64 Bit) an have principally all basics done: setup DB (PostgreSQL 8.2), Tomcat (5.5.2) is running, i have done all settings in dspace.cfg and the 'ant fresh_install' of DSpace is done successfully. But now Tomcat can not access '/jspui' (server response: HTTP-Sataus 404; description: The requested resource (/jspui) is not available). I tried to set up the connectors in server.xml and alternatively copied the [dspace]/webapps/jspui to the tomcat directory $CATALINA_BASE/webapps/. But nothing works. The permissions are right. As user 'dspace' and as user 'tomcat' all files are readable. When I look into the Tomcat-log there seems to be trouble reading configurations - but it is not clear for me which file causes the problem: a Java class file or a Tomcat configuration file edited by me: 13. Mai 08 11:27:20 org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/lib64/gcj-4.1.2 13. Mai 08 11:27:20 org.apache.coyote.http11.Http11BaseProtocol init INFO: Initializing Coyote HTTP/1.1 on http-8081 13. Mai 08 11:27:20 org.apache.catalina.startup.Catalina load INFO: Initialization processed in 746 ms 13. Mai 08 11:27:20 org.apache.catalina.core.StandardService start INFO: Starting service Catalina 13. Mai 08 11:27:20 org.apache.catalina.core.StandardEngine start INFO: Starting Servlet Engine: Apache Tomcat/5.5.20 13. Mai 08 11:27:20 org.apache.catalina.core.StandardHost start INFO: XML validation disabled 13. Mai 08 11:27:21 org.apache.catalina.core.ApplicationContext log INFO: org.apache.webapp.balancer.BalancerFilter: init(): ruleChain: [org.apache.webapp.balancer.RuleChain: [org.apache.webapp.balancer.rules.URLStringMatchRule: Target string: News / Redirect URL: http://www.cnn.com], [org.apache.webapp.balancer.rules.RequestParameterRule: Target param name: paramName / Target param value: paramValue / Redirect URL: http://www.yahoo.com], [org.apache.webapp.balancer.rules.AcceptEverythingRule: Redirect URL: http://jakarta.apache.org]] 13. Mai 08 11:27:21 org.apache.catalina.core.StandardContext start SEVERE: Error in dependencyCheck java.util.jar.JarException: Section should start with a Name header: unexpected '^@' at gnu.java.util.jar.JarUtils.readSectionName(libgcj.so.7rh) at gnu.java.util.jar.JarUtils.readIndividualSections(libgcj.so.7rh) at java.util.jar.Manifest.read(libgcj.so.7rh) at java.util.jar.Manifest.init(libgcj.so.7rh) [snip] at org.apache.catalina.core.StandardServer.start(catalina-5.5.23.jar.soas0s7u.so) at org.apache.catalina.startup.Catalina.start(catalina-5.5.23.jar.soas0s7u.so) at java.lang.reflect.Method.invoke(libgcj.so.7rh) at org.apache.catalina.startup.Bootstrap.start(bootstrap.jar.so) at org.apache.catalina.startup.Bootstrap.main(bootstrap.jar.so) 13. Mai 08 11:27:21 org.apache.catalina.core.StandardContext start SEVERE: Error getConfigured 13. Mai 08 11:27:21 org.apache.catalina.core.StandardContext start SEVERE: Context [/jspui] startup failed due to previous errors 13. Mai 08 11:27:21 org.apache.catalina.core.StandardContext stop INFO: Container org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/jspui] has not been started 13. Mai 08 11:27:22 org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() 13. Mai 08 11:27:22 org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() 13. Mai 08 11:27:22 org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() 13. Mai 08 11:27:22 org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() 13. Mai 08 11:27:22 org.apache.coyote.http11.Http11BaseProtocol start INFO: Starting Coyote HTTP/1.1 on http-8081 13. Mai 08 11:27:22 org.apache.jk.common.ChannelSocket init INFO: JK: ajp13 listening on /0.0.0.0:8009 So at the end Tomcat starts successful but not jspui. :-( I configured the following parameters for Tomcat in /etc/tomcat5/tomcat5.conf: JAVA_OPTS=-Xmx512M -Xms64M -Dfile.encoding=UTF-8 TOMCAT_USER=dspace CONNECTOR_PORT=8081 The running Tomcat process looks like this: $ ps -eF | grep tomcat tomcat 760 1 0 169102 133064 0 May09 ?00:00:08 /usr/lib/jvm/java/bin/java -Xmx512M -Xms64M -Dfile.encoding=UTF-8 -Dcatalina.ext.dirs=/usr/share/tomcat5/shared/lib:/usr/share/tomcat5/common/lib -Dcatalina.ext.dirs=/usr/share/tomcat5/shared/lib:/usr/share/tomcat5/common/lib -Djava.endorsed.dirs=/usr/share/tomcat5/common/endorsed -classpath /usr/lib/jvm/java/lib/tools.jar:/usr/share/tomcat5/bin/bootstrap.jar:/usr/share/tomcat5/bin/commons-logging-api.jar:/usr/share/java/mx4j/mx4j-impl.jar:/usr/share/java/mx4j/mx4j-jmx.jar -Dcatalina.base=/usr/share/tomcat5 -Dcatalina.home=/usr/share/tomcat5
Re: [Dspace-tech] Tomcat can't find DSpace
Yes, GNU Java is installed: $ java --version java version 1.4.2 gij (GNU libgcj) version 4.1.2 20070626 (Red Hat 4.1.2-14) If it is it really necessary to work with Sun Java it should be mentioned more clearly in the docs. Is it possible to have Sun Java additionally to GNU Java? Because GNU Java is the standard java on RedHat EL I would feel more comfortable by keep it. Best regards Robert James Rutherford schrieb: On Tue, May 13, 2008 at 09:44:01AM +, Robert Roggenbuck wrote: INFO: The Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/lib64/gcj-4.1.2 Are you using Sun Java or GNU Java? Using gcj et al can cause no end of problems when running DSpace. cheers, Jim -- - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Tomcat can't find DSpace
On Tue, May 13, 2008 at 12:10:21PM +, Robert Roggenbuck wrote: $ java --version java version 1.4.2 gij (GNU libgcj) version 4.1.2 20070626 (Red Hat 4.1.2-14) If it is it really necessary to work with Sun Java it should be mentioned more clearly in the docs. Is it possible to have Sun Java additionally to GNU Java? Because GNU Java is the standard java on RedHat EL I would feel more comfortable by keep it. See this page for an explanation (and steps towards a solution): http://www.ja-sig.org/wiki/display/CASUM/Deploying+CAS+3.0.x+in+RHEL+5+with+Sun+Java As noted, GNU Java is only equivalent to J2SE 1.4.2 (and Java 1.5 is a requirement for DSpace 1.5 -- I'm pretty sure that is specified in the docs somewhere). cheers, Jim -- James Rutherford | Hewlett-Packard Limited registered Office: Research Engineer | Cain Road, HP Labs | Bracknell, Bristol, UK | Berks +44 117 312 7066 | RG12 1HN. [EMAIL PROTECTED] | Registered No: 690597 England The contents of this message and any attachments to it are confidential and may be legally privileged. If you have received this message in error, you should delete it from your system immediately and advise the sender. To any recipient of this message within HP, unless otherwise stated you should consider this message and attachments as HP CONFIDENTIAL. - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Tomcat can't find DSpace
James Rutherford wrote: As noted, GNU Java is only equivalent to J2SE 1.4.2 (and Java 1.5 is a requirement for DSpace 1.5 -- I'm pretty sure that is specified in the docs somewhere). I'm not sure I would even go that far. From http://gcc.gnu.org/java/: It has been merged with GNU Classpath and supports most of the 1.4 libraries plus some 1.5 additions. which means even they don't claim it is fully compatible with 1.4, let alone 1.5. I guess the documentation should be clear that it requires a JDK certified to be compatible with J2SE 5.0. That doesn't necessarily mean the Sun JDK - Apple, BEA, IBM all deliver certified JDKs across a variety of platforms. But not GNU. Thankfully with the open sourcing of the Sun JDK, we should start seeing distributions migrating away from supplying GNU by default ;) G This email has been scanned by Postini. For more information please visit http://www.postini.com - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Tomcat can't find DSpace
Yes, Java 1.5 is mentioned - sorry for not checking the installed Java version... Thanks for the link. I will see if I can register the server at the RedHat supplementary updates repository. I tell You whether I succeeded or not. Thanks for the help so far Robert James Rutherford schrieb: On Tue, May 13, 2008 at 12:10:21PM +, Robert Roggenbuck wrote: $ java --version java version 1.4.2 gij (GNU libgcj) version 4.1.2 20070626 (Red Hat 4.1.2-14) If it is it really necessary to work with Sun Java it should be mentioned more clearly in the docs. Is it possible to have Sun Java additionally to GNU Java? Because GNU Java is the standard java on RedHat EL I would feel more comfortable by keep it. See this page for an explanation (and steps towards a solution): http://www.ja-sig.org/wiki/display/CASUM/Deploying+CAS+3.0.x+in+RHEL+5+with+Sun+Java As noted, GNU Java is only equivalent to J2SE 1.4.2 (and Java 1.5 is a requirement for DSpace 1.5 -- I'm pretty sure that is specified in the docs somewhere). cheers, Jim - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Tomcat can't find DSpace
Here I am again. Sun Java 1.5 is installed and now DSpace is online! Thank You! But after restarting Tomcat I find in catalina.out some problems similar to the ones before: Using CATALINA_BASE: /usr/share/tomcat5 Using CATALINA_HOME: /usr/share/tomcat5 Using CATALINA_TMPDIR: /usr/share/tomcat5/temp Using JRE_HOME: 13.05.2008 17:12:35 org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/lib/jvm/java-1.5.0-sun-1.5.0.15.x86_64/jre/lib/amd64/server:/usr/lib/jvm/java-1.5.0-sun-1.5.0.15.x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.5.0-sun-1.5.0.15.x86_64/jre/../lib/amd64 13.05.2008 17:12:36 org.apache.coyote.http11.Http11BaseProtocol init INFO: Initializing Coyote HTTP/1.1 on http-8081 13.05.2008 17:12:36 org.apache.catalina.startup.Catalina load INFO: Initialization processed in 1341 ms 13.05.2008 17:12:36 org.apache.catalina.core.StandardService start INFO: Starting service Catalina 13.05.2008 17:12:36 org.apache.catalina.core.StandardEngine start INFO: Starting Servlet Engine: Apache Tomcat/5.5.20 13.05.2008 17:12:36 org.apache.catalina.core.StandardHost start INFO: XML validation disabled 13.05.2008 17:12:37 org.apache.catalina.core.ApplicationContext log INFO: org.apache.webapp.balancer.BalancerFilter: init(): ruleChain: [org.apache.webapp.balancer.RuleChain: [org.apache.webapp.balancer.rules.URLStringMatchRule: Target string: News / Redirect URL: http://www.cnn.com], [org.apache.webapp.balancer.rules.RequestParameterRule: Target param name: paramName / Target param value: paramValue / Redirect URL: http://www.yahoo.com], [org.apache.webapp.balancer.rules.AcceptEverythingRule: Redirect URL: http://jakarta.apache.org]] log4j:WARN No appenders could be found for logger (org.apache.commons.digester.Digester). log4j:WARN Please initialize the log4j system properly. INFO: Loading provided config file: /opt/dspace/config/dspace.cfg INFO: Using dspace provided log configuration (log.init.config) INFO: Loading: /opt/dspace/config/log4j.properties log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /opt/dspace/log/dspace.log (Permission denied) at java.io.FileOutputStream.openAppend(Native Method) at java.io.FileOutputStream.init(FileOutputStream.java:177) [snip] at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /opt/dspace/log/checker.log (Permission denied) at java.io.FileOutputStream.openAppend(Native Method) at java.io.FileOutputStream.init(FileOutputStream.java:177) [snip] at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) 13.05.2008 17:12:40 org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() 13.05.2008 17:12:40 org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() 13.05.2008 17:12:40 org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() 13.05.2008 17:12:40 org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() 13.05.2008 17:12:40 org.apache.coyote.http11.Http11BaseProtocol start INFO: Starting Coyote HTTP/1.1 on http-8081 13.05.2008 17:12:40 org.apache.jk.common.ChannelSocket init INFO: JK: ajp13 listening on /0.0.0.0:8009 13.05.2008 17:12:40 org.apache.jk.server.JkMain start INFO: Jk running ID=0 time=0/49 config=null 13.05.2008 17:12:40 org.apache.catalina.storeconfig.StoreLoader load INFO: Find registry server-registry.xml at classpath resource 13.05.2008 17:12:40 org.apache.catalina.startup.Catalina start INFO: Server startup in 4707 ms The problems I see: - The Apache Tomcat Native library is still not found. Is it required. Should'nt it be part of Tomcat. Did I set a path wrong? - Can I ignore the log4j-warning because of the later successful loading message regarding log4j? - Tomcat still starts up as user 'tomcat', not 'dspace'. This seems to be the reason for the permission problems. But why does Tomcat ignore the settings in tomcat5.conf? Best regards Robert Robert Roggenbuck schrieb: Yes, Java 1.5 is mentioned - sorry for not checking the installed Java version... Thanks for the link. I will see if I can register the server at the RedHat supplementary updates repository. I tell You whether I succeeded or not. Thanks for the help so far Robert - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual
Re: [Dspace-tech] Tomcat can't find DSpace
On Tue, May 13, 2008 at 03:29:33PM +, Robert Roggenbuck wrote: Sun Java 1.5 is installed and now DSpace is online! Thank You! Glad to hear it. But after restarting Tomcat I find in catalina.out some problems similar to the ones before: snip/ The problems I see: - The Apache Tomcat Native library is still not found. Is it required. Should'nt it be part of Tomcat. Did I set a path wrong? I think you can safely ignore this one, but I'm no tomcat expert. - Can I ignore the log4j-warning because of the later successful loading message regarding log4j? Once you sort out the permissions problem, take a look at your dspace.log and see if anything is in it. If so, yes, you can ignore that warning :) - Tomcat still starts up as user 'tomcat', not 'dspace'. This seems to be the reason for the permission problems. But why does Tomcat ignore the settings in tomcat5.conf? Pass. I'm not sure how Red Hat bundles configures Tomcat, but there ought to be a good amount of documentation on the matter (and if not, presumably you can contact support). cheers, Jim -- James Rutherford | Hewlett-Packard Limited registered Office: Research Engineer | Cain Road, HP Labs | Bracknell, Bristol, UK | Berks +44 117 312 7066 | RG12 1HN. [EMAIL PROTECTED] | Registered No: 690597 England The contents of this message and any attachments to it are confidential and may be legally privileged. If you have received this message in error, you should delete it from your system immediately and advise the sender. To any recipient of this message within HP, unless otherwise stated you should consider this message and attachments as HP CONFIDENTIAL. - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Tomcat can't find DSpace
Maybe I can help The problems I see: - The Apache Tomcat Native library is still not found. Is it required. Should'nt it be part of Tomcat. Did I set a path wrong? Apache Native Library is not required, if you install it you will have a boost in performance, that's all. But my sysadmin has had lots of problems to deploy it so maybe it's wiser to ignore it by now. - Can I ignore the log4j-warning because of the later successful loading message regarding log4j? The warning about /log/dspace.log is because by default dspace doesn't create those files. You need to create: /opt/dspace/log/dspace.log /opt/dspace/log/checker.log and chown them to tomcat. - Tomcat still starts up as user 'tomcat', not 'dspace'. This seems to be the reason for the permission problems. But why does Tomcat ignore the settings in tomcat5.conf? If you run /etc/init.d/tomcat (as you should) that script sets tomcat as the user that runs tomcat. I can't see any reason you want to change that, aside from putting your server at risk :) Tomcat must run under tomcat user. Hope this helps, Pere - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
