[Dspace-tech] PSQL Error when making a copy of postgres db
Hi, I'm trying to copy a DSpace PostgreSql database from one server to another to create a separate testing/dev environment. Dumping (pg_dump database db.sql) and reloading (psql database db.sql) the SQL to the second server seems to work fine. However when I try to access the DSpace XMLUI using the db copy I get the following error: org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block I have logging set on debug and the offending(?) SQL query says: 2009-11-11 12:27:51,635 DEBUG org.dspace.storage.rdbms.DatabaseManager @ Running query SELECT * FROM community WHERE NOT community_id IN (SELECT child_comm_id FROM community2community) ORDER BY name with parameters: Both servers are RHEL5 with psql (PostgreSQL) 8.1.18. DSpace is version 1.5.2 with the delegated admins patch applied. Vacuuming and reindexing does not seem to help. Anyone have ideas on how to fix this? T -- -- Timo Aalto Planning Officer University of Helsinki Library timo dot j dot aalto at helsinki dot fi -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] PSQL error
I started having these out of nowhere when trying to submit files to DSpace. Any ideas how can I fix this. Restaring, re-indexing or vacuuming the db doesnt help. My guess is that some item is maliciously left hanging and thus blocking the way for other items. -Mika org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1525) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1309) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:188) at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:354) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:308) at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:101) at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:101) at org.dspace.storage.rdbms.DatabaseManager.execute(DatabaseManager.java:1492) at org.dspace.storage.rdbms.DatabaseManager.update(DatabaseManager.java:853) at org.dspace.content.Item.update(Item.java:1420) at org.dspace.content.Item.create(Item.java:247) at org.dspace.content.WorkspaceItem.create(WorkspaceItem.java:173) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.mozilla.javascript.NativeJavaMethod.call(NativeJavaMethod.java:230) at org.mozilla.javascript.ScriptRuntime.call(ScriptRuntime.java:1244) at org.mozilla.javascript.continuations.ContinuationInterpreter.interpret(ContinuationInterpreter.java:1134) at org.mozilla.javascript.continuations.ContinuationInterpreter.interpret(ContinuationInterpreter.java:190) at org.mozilla.javascript.continuations.ContinuationInterpreter.interpret(ContinuationInterpreter.java:138) at org.mozilla.javascript.continuations.InterpretedFunctionImpl.call(InterpretedFunctionImpl.java:121) at org.mozilla.javascript.ScriptRuntime.call(ScriptRuntime.java:1244) at org.mozilla.javascript.ScriptableObject.callMethod(ScriptableObject.java:1591) at org.apache.cocoon.components.flow.javascript.fom.FOM_JavaScriptInterpreter.handleContinuation(FOM_JavaScriptInterpreter.java:852) at org.apache.cocoon.components.treeprocessor.sitemap.CallFunctionNode.invoke(CallFunctionNode.java:123) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:46) at org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(MatchNode.java:107) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:46) at org.apache.cocoon.components.treeprocessor.sitemap.PreparableMatchNode.invoke(PreparableMatchNode.java:130) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:68) at org.apache.cocoon.components.treeprocessor.sitemap.SelectNode.invoke(SelectNode.java:116) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:68) at org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(PipelineNode.java:142) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:68) at org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(PipelinesNode.java:92) at org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process(ConcreteTreeProcessor.java:234) at org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.buildPipeline(ConcreteTreeProcessor.java:192) at org.apache.cocoon.components.treeprocessor.TreeProcessor.buildPipeline(TreeProcessor.java:265) at org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(MountNode.java:110) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:68) at org.apache.cocoon.components.treeprocessor.sitemap.SelectNode.invoke(SelectNode.java:102) at org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.invokeNodes(AbstractParentProcessingNode.java:46)
[Dspace-tech] Psql error
Im getting a whole lot of errors in my log file (Dspace 1.4.2, Manakin 1.1 (trunk)) . The one Im worried about is this. Has anyone experienced this and perhaps solved it? Thanks, Mika LOG: unexpected EOF on client connection org.postgresql.util.PSQLException: An I/O error occured while sending to the backend. at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:214) at org.postgresql.jdbc2.AbstractJdbc2Connection.executeTransactionCommand(AbstractJdbc2Connection.java:617) at org.postgresql.jdbc2.AbstractJdbc2Connection.rollback(AbstractJdbc2Connection.java:654) at org.apache.commons.dbcp.DelegatingConnection.rollback(DelegatingConnection.java:265) at org.apache.commons.dbcp.DelegatingConnection.rollback(DelegatingConnection.java:265) at org.apache.commons.dbcp.PoolingDriver$PoolGuardConnectionWrapper.rollback(PoolingDriver.java:348) at org.dspace.core.Context.abort(Context.java:251) at org.dspace.core.Context.finalize(Context.java:384) at java.lang.ref.Finalizer.invokeFinalizeMethod(Native Method) at java.lang.ref.Finalizer.runFinalizer(Finalizer.java:83) at java.lang.ref.Finalizer.access$100(Finalizer.java:14) at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:160) Caused by: java.net.SocketException: Socket closed at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:99) at java.net.SocketOutputStream.write(SocketOutputStream.java:136) at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65) at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123) at org.postgresql.core.PGStream.flush(PGStream.java:532) at org.postgresql.core.v3.QueryExecutorImpl.sendSync(QueryExecutorImpl.java:672) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:187) ... 11 more java.sql.SQLException: Already closed. at org.apache.commons.dbcp.PoolableConnection.close(PoolableConnection.java:77) at org.apache.commons.dbcp.PoolingDriver$PoolGuardConnectionWrapper.close(PoolingDriver.java:240) at org.dspace.storage.rdbms.DatabaseManager.freeConnection(DatabaseManager.java:733) at org.dspace.core.Context.abort(Context.java:260) at org.dspace.core.Context.finalize(Context.java:384) at java.lang.ref.Finalizer.invokeFinalizeMethod(Native Method) at java.lang.ref.Finalizer.runFinalizer(Finalizer.java:83) at java.lang.ref.Finalizer.access$100(Finalizer.java:14) at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:160) LOG: unexpected EOF on client connection - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now http://get.splunk.com/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Psql error
On Wed, Sep 05, 2007 at 04:27:27PM +0300, Mika Stenberg wrote: LOG: unexpected EOF on client connection This is a problem caused by DSpace not properly closing database connections. It's nothing to worry about really (although it is probably indicative of sloppy / incorrect use of the Context somewhere); all that has happened is that the postgres JDBC driver is trying to use a connection that it assumes is open when it's not. When the driver realised it's actually closed, it will just go hunting for another. I think this is in the list of things that need cleaning up in the near future... cheers, Jim -- James Rutherford | Hewlett-Packard Limited registered Office: Research Engineer | Cain Road, HP Labs | Bracknell, Bristol, UK | Berks +44 117 312 7066 | RG12 1HN. [EMAIL PROTECTED] | Registered No: 690597 England The contents of this message and any attachments to it are confidential and may be legally privileged. If you have received this message in error, you should delete it from your system immediately and advise the sender. To any recipient of this message within HP, unless otherwise stated you should consider this message and attachments as HP CONFIDENTIAL. - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now http://get.splunk.com/ ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
