Re: Unable to install from elpa
This might be because the builtin version is the same as the one in elpa (although if that's the case the UI is somewhat confusing) but I'm not sure about that because I don't quite understand the relationship between builtin versions and stable external releases. I mean, is builtin org only updated to match external releases or does it follow a different cadence? Does a strict number version match between builtin and external implies exactly the same org revision? And in this case, is it expected that package.el doesn't offer org as a valid installation target nor prepends org's local path to the builtin one? Best regards, Carlos
Unable to install from elpa
Hi all,
in a clean emacs-28 install I do:
M-x package-install org
I get:
Possible completions are:
org-contrib org-edna org-real org-translate orgalist
package-archives has:
(("gnu" . "https://elpa.gnu.org/packages/;)
("nongnu" . "https://elpa.nongnu.org/nongnu/;))
I do list-packages, org is now listed as available in gnu archive, I
install it from there, relaunch emacs (again with -Q), do
(package-initialize) and:
- check org-version: it's still the builtin one.
- check load-path: doesn't include my ~/.emacs.d/elpa/org-9.5
directory (although it exists and installing other packages works as
expected)
So many things are not working properly:
1. I'm unable to install org using package-install.
2. I can install it from the package list but then it's not added to load-path.
3. Of course the builtin version gets loaded instead of the elpa one.
All this is in a recent build from emacs-28 with default configure
options (including native compilation).
Best regards,
Carlos
Re: after installing python3.6 on Ubuntu 16.04, org files open with errors
Uwe Brauer writes: > Hi > > I am running Ubuntu 16.04 and I installed python3.6 (which is not > officially supported for that Ubuntu version via > https://askubuntu.com/questions/865554/how-do-i-install-python-3-6-using-apt-get > > I also installed > > sudo -H python3.6 -m pip install jupyter > sudo -H python3.6 -m pip install pexpect > sudo -H python3.6 -m pip install matlab_kernel > > > Now however I cannot open even simple org files, I obtain errors I attach > and most of my keybinding and other things do not work. > > Any help is strongly appreciated. > > Regards > The whole transition from v2.x to v3.x for python has been a terrible mess. Version issues are the most frustrating aspect of Python and one reason I've never embraced the language. Given that Ubuntu 16.04 was end of life in April 2021, my recommendation would be to upgrade to ubuntu 21.04. That version seems to have a more consistent Python environment (based on v3). It also has newer ciaro, hafbuzz and other libs used by Emacs which will likely work better and once Emacs 28.0 is released, will have the gccjit libs necessary for native comp etc.
Re: whitespace in org source files
excalamus--- via "General discussions about Org-mode." writes: > I'm hacking on ob-shell.el and I see that the source has mixed tabs and > spaces. > If I were to contribute changes, would it be an issue if tabs were converted > to > whitespace? > > I've not used the email contribution style before and have had whitespace > issues > in the past with GitHub PRs. I typically run whitespace-cleanup with the > before-save-hook which changes tabs to spaces. It is usually a bad idea to change whitespace in this manner. It will not improve readibility but will cause lots of change which will likely make merging and tracking/reviewing changes harder than necessary. Ideally, git itslef would be configured to deal with this automatically. Unfortunately, the tab v space arguments can often reach the level of religious war and represents something which is difficult to get consensus on. My recommendation would be to use dir local variable settings to make Emacs use the same formatting style (i.e. with tabs) for working with org-mode sources if your normal/wider preference is just for spaces. this will prevent Emacs from making unnecessary whitespace changes.
whitespace in org source files
I'm hacking on ob-shell.el and I see that the source has mixed tabs and spaces. If I were to contribute changes, would it be an issue if tabs were converted to whitespace? I've not used the email contribution style before and have had whitespace issues in the past with GitHub PRs. I typically run whitespace-cleanup with the before-save-hook which changes tabs to spaces.
Weird gap in agenda mode-line
Hi all, in the *Org Agenda* buffer mode-line I'm seeing a weird gap that I can't remember whether it was before or not. In the attached screenshot the gap shows a different face than the rest. I don't know under which circumstances this change of face happens but, in any case, the extra space is always there (emacs -q) and there is some combination in my setup that sometimes more obviously reveals it. I don't know if that's a lighter with just a space on it or what. Best regards, Carlos --- org-mode version: 9.5, release_9.5-68-g77e2ec (emacs-28 branch)
after installing python3.6 on Ubuntu 16.04, org files open with errors
Hi
I am running Ubuntu 16.04 and I installed python3.6 (which is not
officially supported for that Ubuntu version via
https://askubuntu.com/questions/865554/how-do-i-install-python-3-6-using-apt-get
I also installed
sudo -H python3.6 -m pip install jupyter
sudo -H python3.6 -m pip install pexpect
sudo -H python3.6 -m pip install matlab_kernel
Now however I cannot open even simple org files, I obtain errors I attach
and most of my keybinding and other things do not work.
Any help is strongly appreciated.
Regards
Uwe Brauer
Traceback (most recent call last):
File "/home/oub/.emacs.d/elpa/ob-ipython-20180224.153/client.py", line 1, in
import jupyter_client as client
File "/usr/local/lib/python3.6/dist-packages/jupyter_client/__init__.py",
line 6, in
from .asynchronous import AsyncKernelClient # noqa
File
"/usr/local/lib/python3.6/dist-packages/jupyter_client/asynchronous/__init__.py",
line 1, in
from .client import AsyncKernelClient # noqa
File
"/usr/local/lib/python3.6/dist-packages/jupyter_client/asynchronous/client.py",
line 6, in
from jupyter_client.channels import HBChannel
File "/usr/local/lib/python3.6/dist-packages/jupyter_client/channels.py",
line 15, in
from .session import Session
File "/usr/local/lib/python3.6/dist-packages/jupyter_client/session.py", line
52, in
from jupyter_client.jsonutil import extract_dates
File "/usr/local/lib/python3.6/dist-packages/jupyter_client/jsonutil.py",
line 15, in
from dateutil.parser import parse as _dateutil_parse # type: ignore
File "/usr/lib/python3/dist-packages/dateutil/parser.py", line 25, in
from six import text_type, binary_type, integer_types
ModuleNotFoundError: No module named 'six'
Debugger entered--Lisp error: (json-readtable-error 84)
signal(json-readtable-error (84))
json-read()
json-read-from-string("Traceback (most recent call last):\n File
\"/usr/local/bin/jupyter-kernelspec\", line 7, in \nfrom
jupyter_client.kernelspecapp import KernelSpecApp\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/__init__.py\", line 6,
in \nfrom .asynchronous import AsyncKernelClient # noqa\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/asynchronous/__init__.py\",
line 1, in \nfrom .client import AsyncKernelClient # noqa\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/asynchronous/client.py\",
line 6, in \nfrom jupyter_client.channels import HBChannel\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/channels.py\", line 15,
in \nfrom .session import Session\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/session.py\", line 52,
in \nfrom jupyter_client.jsonutil import extract_dates\n File
\"/usr/local/lib/python3.6/dist-packages/jupyter_client/jsonutil.py\", line 15,
in \nfrom dateutil.parser import parse as _dateutil_parse # type:
ignore\n File \"/usr/lib/python3/dist-packages/dateutil/parser.py\", line 25,
in \nfrom six import text_type, binary_type,
integer_types\nModuleNotFoundError: No module named 'six'\n")
ob-ipython--get-kernels()
ob-ipython-auto-configure-kernels()
run-hooks(change-major-mode-after-body-hook text-mode-hook outline-mode-hook
org-mode-hook)
apply(run-hooks (change-major-mode-after-body-hook text-mode-hook
outline-mode-hook org-mode-hook))
run-mode-hooks(org-mode-hook)
org-mode()
set-auto-mode-0(org-mode nil)
set-auto-mode--apply-alist((("\\.odb\\'" . archive-mode) ("\\.oth\\'" .
archive-mode) ("\\.otf\\'" . archive-mode) ("\\.oti\\'" . archive-mode)
("\\.otc\\'" . archive-mode) ("\\.wiki\\'" . wikipedia-mode) ("\\.text\\'" .
markdown-mode) ("\\.tlc\\'" . tlc-mode) ("\\.m\\'" . matlab-mode) ("\\.org$" .
org-mode) ("\\.odc\\'" . archive-mode) ("\\.odf\\'" . archive-mode)
("\\.odi\\'" . archive-mode) ("\\.otp\\'" . archive-mode) ("\\.odp\\'" .
archive-mode) ("\\.otg\\'" . archive-mode) ("\\.odg\\'" . archive-mode)
("\\.ots\\'" . archive-mode) ("\\.ods\\'" . archive-mode) ("\\.odm\\'" .
archive-mode) ("\\.ott\\'" . archive-mode) ("\\.odt\\'" . archive-mode)
("\\.fqm$" . message-mode) ("\\.alda\\'" . alda-mode) ("\\.[Cc][Ss][Vv]\\'" .
csv-mode) ("\\.d[i]?\\'" . d-mode) ("\\.diffscuss\\'" . diffscuss-mode)
("\\.djvu\\'" . djvu-dummy-mode)
("[/]pentadactyl\\.\\(inbox\\|mail\\)\\.google\\..*\\.txt..." .
gmail-message-mode)
("[/]itsalltext[/]\\(inbox\\|mail\\)\\.google\\..*\\.t..." .
gmail-message-mode)
("[/]\\(inbox\\|mail\\)-google-com.*\\.\\(ckr\\|html?\\|t..." .
gmail-message-mode) ("hg-histedit-" . hg-histedit-mode) ("\\.hgignore\\'" .
hgignore-mode) ("/Mercurial\\.ini\\'" . hgrc-mode) ("/\\.hg/hgrc\\'" .
hgrc-mode) ("/\\.hgrc\\'" . hgrc-mode) ("\\.lean$" . lean-mode) ("\\.ledger\\'"
. ledger-mode) ("/git-rebase-todo\\'" . git-rebase-mode) ("\\.R$" . R-mode)
("\\.jl\\'" . julia-mode) ("\\.tlc$" . tlc-mode) ("\\.m$" . matlab-mode)
("\\.hva\\'" . latex-mode) ("\\.swift\\'" .
Re: [BUG] Citations: Locator treated as prefix [9.5 (release_9.5-225-g494c20 @ /home/quintus/.emacs.d/org-mode/lisp/)]
M. ‘quintus’ Gülker writes:
>> I don’t think it is reasonable to expect this variable to contain every
>> identifier in every language. It may be a good idea to turn the variable
>> above into a defcustom, thus.
>
> Probably, but I will leave this to you. Just using the standard
> “chapter” selector resolves my problem here.
Good. I’m not sure but I think it would be more natural if locators
could be expressed in user’s language. I will let actual users chime in.
>> Meanwhile, you can test again after evaluating:
>>
>> (push '("Kap." . "chapter") org-cite-csl--label-alist)
>
> Interestingly, doing this does not make it work for me, the “Kap.” still
> is displays at the beginning.
Indeed. I forgot to say you also need to re-evaluate
‘org-cite-csl--label-regexp’ definition (in "oc-csl.el"), in order to
refresh the locator regexp matched against.
Regards,
Re: [BUG] Citations: Locator treated as prefix [9.5 (release_9.5-225-g494c20 @ /home/quintus/.emacs.d/org-mode/lisp/)]
Am Freitag, dem 12. November 2021 schrieb Nicolas Goaziou:
> This is because "Kap." is not known as a locator identifier. See
> ‘org-cite-csl--label-alist’ for the full list of such identifiers.
You are right, sir. “Kap.” is German for “chapter” and CSL does have a
localisable chapter locator. Using
Das ist ein Test [cite:@redeker2020itr chapter A Rn. 72, Suffixtext hier]
results indeed in the desired
1 Redeker, IT-Recht, 7. Aufl. (2020), Kap. A Rn. 72 Suffixtext hier
. Thanks for pointing it out.
> I don’t think it is reasonable to expect this variable to contain every
> identifier in every language. It may be a good idea to turn the variable
> above into a defcustom, thus.
Probably, but I will leave this to you. Just using the standard
“chapter” selector resolves my problem here.
> Meanwhile, you can test again after evaluating:
>
> (push '("Kap." . "chapter") org-cite-csl--label-alist)
Interestingly, doing this does not make it work for me, the “Kap.” still
is displays at the beginning.
-quintus
--
Dipl.-Jur. M. Gülker | https://mg.guelker.eu | PGP: Siehe Webseite
Passau, Deutschland | kont...@guelker.eu| O<
Re: execute src block during export (Re: Worg HTML export problem?)
Aloha Max, Max Nikulin writes: On 12/11/2021 00:24, Thomas S. Dye wrote: The original problem is likely due to the default header arguments in ob-org.el, which are unusual. It is great that the problem is solved. I do not think however that something inside ob-org.el may affect processing of a file before this package is loaded. If I export both, then all is well. #+begin_src emacs-lisp :results value none :exports both (org-babel-do-load-languages 'org-babel-load-languages '((org . t))) #+end_src I feel that I have missed something. I do not see the purpose to include this source block in user docs. I expect that for accidental usage it is more convenient to type (require 'ob-org), while as a permanent settings it is possible to do customize-variable org-babel-load-languages or to use `add-to-list'. The source block is included to show the user how to modify their .emacs. I was surprised that changing its :results header argument had an effect on export. Do you have an explanation why the header argument makes this difference on Worg? All the best, Tom -- Thomas S. Dye https://tsdye.online/tsdye
Re: execute src block during export (Re: Worg HTML export problem?)
On 12/11/2021 00:24, Thomas S. Dye wrote: The original problem is likely due to the default header arguments in ob-org.el, which are unusual. It is great that the problem is solved. I do not think however that something inside ob-org.el may affect processing of a file before this package is loaded. If I export both, then all is well. #+begin_src emacs-lisp :results value none :exports both (org-babel-do-load-languages 'org-babel-load-languages '((org . t))) #+end_src I feel that I have missed something. I do not see the purpose to include this source block in user docs. I expect that for accidental usage it is more convenient to type (require 'ob-org), while as a permanent settings it is possible to do customize-variable org-babel-load-languages or to use `add-to-list'.
babel+matlab+python2.7+matlab_kernel ipython jupyter matlab: problem
Hi
I am on ubuntu 16.04 with python 3.5 and 2.7 in the past I have used
successfully the matlab python kernel for 3.5
Using more or less this:
sudo apt-get install python3-setuptools
sudo -H python3 -m pip install jupyter
sudo apt-get remove python3-pexpect
sudo -H python3 -m pip install pexpect
sudo -H python3 -m pip install matlab_kernel
** Install the python API for matlab.
MATLABROOT=/usr/local/MATLAB/R2016b
Cd $MATLABROOT/extern/engines/python
sudo -H python3 setup.py install
** Start the engine
Run
/usr/bin/python3
in the python prompt:
import matlab.engine
eng = matlab.engine.start_matlab()
the eng command needs some time to run.
When finished run now
#+BEGIN_SRC emacs-lisp
(setq org-confirm-babel-evaluate nil)
;;; display/update images in the buffer after I evaluate
(add-hook 'org-babel-after-execute-hook 'org-display-inline-images 'append)
(add-to-list 'org-src-lang-modes '("matlab" . matlab))
(setq python-shell-interpreter "/usr/bin/python3")
;(setq python-shell-interpreter "/usr/bin/python2.7")
;; set default headers for convenience
(setq org-babel-default-header-args:matlab
'((:results . "output replace")
(:session . "matlab")
(:kernel . "matlab")
(:exports . "code")
(:cache . "no")
(:noweb . "no")
(:hlines . "no")
(:tangle . "no")))
(defalias 'org-babel-execute:matlab 'org-babel-execute:ipython)
(defalias 'org-babel-prep-session:matlab 'org-babel-prep-session:ipython)
(defalias 'org-babel-matlab-initiate-session
'org-babel-ipython-initiate-session)
#+END_SRC
However I am forced to use matlab 2019b, which is not longer compatible
with python 3.5, but according to their documentation with 2.7, so I
repeated the steps above using python-2.7 instead of 3.5
And of course
;(setq python-shell-interpreter "/usr/bin/python3")
(setq python-shell-interpreter "/usr/bin/python2.7")
But when I try to execute in an org file
#+begin_src matlab :results output latex :exports results :eval never-export
:wrap latex
x = [1, 2, 3, 4, 5];
fprintf('|%d', x)
#+end_src
Emacs shows me that is he is working and working and finally I have to
interrupt the process, I also don't see any error stack.
Anybody has successfully used the above configuration with python 2.7?
Thanks
Uwe Brauer
Re: [BUG] Citations: Locator treated as prefix [9.5 (release_9.5-225-g494c20 @ /home/quintus/.emacs.d/org-mode/lisp/)]
Hello,
M. ‘quintus’ Gülker writes:
> take this org file `mwe.org':
>
> #+TITLE: Test
> #+AUTHOR: Testauthor
>
> #+LANGUAGE: de
> #+bibliography: /tmp/mwe/mwe.bib
>
> #+cite_export: csl /tmp/mwe/juristische-schulung.csl
>
> Das ist ein Test [cite:@redeker2020itr Kap. A Rn. 72, Suffixtext hier]
>
> with this `mwe.bib' Biblatex file:
>
> @Book{redeker2020itr,
> author = {Helmut Redeker},
> title= {IT-Recht},
> year = {2020},
> edition = {7},
> publisher = {C.H. Beck},
> location = {München},
> langid= {ngerman}}
>
> `juristische-schulung.el' is
> https://github.com/citation-style-language/styles/blob/e22b8a566bad9b4c7f52720f60dd875057a5d210/juristische-schulung.csl
>
> When this is exported to HTML, the locator `Kap. A Rn. 72' is split and
> partly taken as the prefix. It exports to this:
>
> 1 Kap. A Rn. Redeker, IT-Recht, 7. Aufl. (2020), 72 Suffixtext hier
>
> This is incorrect; it should export to:
>
> 1 Redeker, IT-Recht, 7. Aufl. (2020), Kap. A Rn. 72 Suffixtext
> hier
This is because "Kap." is not known as a locator identifier. See
‘org-cite-csl--label-alist’ for the full list of such identifiers.
I don’t think it is reasonable to expect this variable to contain every
identifier in every language. It may be a good idea to turn the variable
above into a defcustom, thus.
Meanwhile, you can test again after evaluating:
(push '("Kap." . "chapter") org-cite-csl--label-alist)
Regards,
--
Nicolas Goaziou
