Re: [HCP-Users] MSMAll Failure Following hcp-fix_multi-run
Please upgrade to the latest version of the HCP Pipelines (the latest master has a few fixes relative to 4.0.0), the latest FSL 6.0.1, and the latest FIX. Matt. From: on behalf of Timothy Hendrickson Date: Sunday, June 23, 2019 at 4:32 PM To: "hcp-users@humanconnectome.org" Subject: [HCP-Users] MSMAll Failure Following hcp-fix_multi-run Hello, I am having issues running MSMAll following hcp-fix_multi-run for a study that I am doing processing for. The particular study that I am processing data for has 6 fMRI scans totalling 2950 timepoints per scanning session. I am certainly aware of the large amount of memory that hcp-fix_multi-run requires as it is fed more timepoints, however, this is completing without issue. I am running HCP version 3.27.0 with MSMAll v2 and FSL 5.0.11. Is there a way to get around this error? If I end up having to break up hcp-fix_multi-run do you have any best practices on how to do this (i.e. should it be a mix of tfMRI and rsfMRI, etc)? Best, -Tim Timothy Hendrickson Neuroimaging Analyst/Staff Scientist University of Minnesota Informatics Institute University of Minnesota Bioinformatics M.S. Candidate Office: 612-624-0783 Mobile: 507-259-3434 (texts okay) ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
[HCP-Users] MSMAll Failure Following hcp-fix_multi-run
Hello, I am having issues running MSMAll following hcp-fix_multi-run for a study that I am doing processing for. The particular study that I am processing data for has 6 fMRI scans totalling 2950 timepoints per scanning session. I am certainly aware of the large amount of memory that hcp-fix_multi-run requires as it is fed more timepoints, however, this is completing without issue. I am running HCP version 3.27.0 with MSMAll v2 and FSL 5.0.11. Is there a way to get around this error? If I end up having to break up hcp-fix_multi-run do you have any best practices on how to do this (i.e. should it be a mix of tfMRI and rsfMRI, etc)? Best, -Tim Timothy Hendrickson Neuroimaging Analyst/Staff Scientist University of Minnesota Informatics Institute University of Minnesota Bioinformatics M.S. Candidate Office: 612-624-0783 Mobile: 507-259-3434 (texts okay) ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] matlab cifti io
Look at option B here: https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ Matt. From: on behalf of Aaron R Date: Sunday, June 23, 2019 at 9:04 AM To: hcp-users Subject: [HCP-Users] matlab cifti io Dear HCP users, What's the current link for the matlab cifti i/o tools? The link in the readme here (and everywhere else) is dead: https://github.com/Washington-University/cifti-matlab Thanks, Aaron ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
[HCP-Users] matlab cifti io
Dear HCP users, What's the current link for the matlab cifti i/o tools? The link in the readme here (and everywhere else) is dead: https://github.com/Washington-University/cifti-matlab Thanks, Aaron ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
