Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
The simple solution is to delete or rename the "libz.so.1" file in the
libs_linux64 directory.
What is going on is that an OS-supplied libpng is being pulled in, which
was compiled against a newer libz than we bundle in the linux distribution,
but the fact that libz was found in our bundled libraries prevents the
OS-supplied libz from being found. The reason it was bundled in the
distribution is probably because older distributions than our build
environment didn't have a new enough libz.
Tim
On Fri, Feb 1, 2019 at 9:29 PM erik lee wrote:
> Thank you very much! I will give that a try.
>
> Best,
> Erik
>
> On Fri, Feb 1, 2019 at 8:23 PM Takuya Hayashi
> wrote:
>
>> We've recently encountered similar problem in our Ubuntu 18.04 and solved
>> this by the followings:
>>
>> Download Zlib 1.2.9 from here:
>>
>> https://sourceforge.net/projects/libpng/files/zlib/1.2.9/zlib-1.2.9.tar.gz/download
>>
>> tar -xvf ~/Downloads/zlib-1.2.9.tar.gz
>> cd zlib-1.2.9
>> ./configure;
>> make;
>> make install;
>> cd ${your workbench dir}/libs_linux64
>> mv libz.so.1 libz.so.1.back
>> ln -sf /usr/local/lib/libz.so.1.2.9 libz.so.1
>>
>> You may need to use 'sudo' to run some of commands to avoid permission
>> issue.
>>
>> Takuya
>>
>> 2019年2月2日(土) 10:06 Glasser, Matthew :
>>
>>> The person to address this is on vacation and will be back next week.
>>>
>>> Matt.
>>>
>>> From: on behalf of erik lee <
>>> erik.lee...@gmail.com>
>>> Date: Friday, February 1, 2019 at 6:20 PM
>>> To: "hcp-users@humanconnectome.org"
>>> Subject: [HCP-Users] Workbench tools installation in Ubuntu 18.04
>>>
>>> Hi,
>>>
>>> I am trying to install the Connectome Workbench software on my linux
>>> machine (Ubuntu 18.04). When I try to run wb_view or wb_command, I get the
>>> following error:
>>>
>>> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
>>> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
>>> `ZLIB_1.2.9' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
>>> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
>>> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
>>> `ZLIB_1.2.3.4' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
>>>
>>> Does anyone know where to find these packages or how to get around this
>>> error??
>>>
>>> Thanks in advance,
>>> Erik
>>>
>>> ___
>>> HCP-Users mailing list
>>> HCP-Users@humanconnectome.org
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>>
>>>
>>> --
>>>
>>> The materials in this message are private and may contain Protected
>>> Healthcare Information or other information of a sensitive nature. If you
>>> are not the intended recipient, be advised that any unauthorized use,
>>> disclosure, copying or the taking of any action in reliance on the contents
>>> of this information is strictly prohibited. If you have received this email
>>> in error, please immediately notify the sender via telephone or return mail.
>>>
>>> ___
>>> HCP-Users mailing list
>>> HCP-Users@humanconnectome.org
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>>
>> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
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Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
Thank you very much! I will give that a try.
Best,
Erik
On Fri, Feb 1, 2019 at 8:23 PM Takuya Hayashi
wrote:
> We've recently encountered similar problem in our Ubuntu 18.04 and solved
> this by the followings:
>
> Download Zlib 1.2.9 from here:
>
> https://sourceforge.net/projects/libpng/files/zlib/1.2.9/zlib-1.2.9.tar.gz/download
>
> tar -xvf ~/Downloads/zlib-1.2.9.tar.gz
> cd zlib-1.2.9
> ./configure;
> make;
> make install;
> cd ${your workbench dir}/libs_linux64
> mv libz.so.1 libz.so.1.back
> ln -sf /usr/local/lib/libz.so.1.2.9 libz.so.1
>
> You may need to use 'sudo' to run some of commands to avoid permission
> issue.
>
> Takuya
>
> 2019年2月2日(土) 10:06 Glasser, Matthew :
>
>> The person to address this is on vacation and will be back next week.
>>
>> Matt.
>>
>> From: on behalf of erik lee <
>> erik.lee...@gmail.com>
>> Date: Friday, February 1, 2019 at 6:20 PM
>> To: "hcp-users@humanconnectome.org"
>> Subject: [HCP-Users] Workbench tools installation in Ubuntu 18.04
>>
>> Hi,
>>
>> I am trying to install the Connectome Workbench software on my linux
>> machine (Ubuntu 18.04). When I try to run wb_view or wb_command, I get the
>> following error:
>>
>> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
>> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
>> `ZLIB_1.2.9' not found (required by
>> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
>> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
>> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
>> `ZLIB_1.2.3.4' not found (required by
>> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
>>
>> Does anyone know where to find these packages or how to get around this
>> error??
>>
>> Thanks in advance,
>> Erik
>>
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>
>>
>> --
>>
>> The materials in this message are private and may contain Protected
>> Healthcare Information or other information of a sensitive nature. If you
>> are not the intended recipient, be advised that any unauthorized use,
>> disclosure, copying or the taking of any action in reliance on the contents
>> of this information is strictly prohibited. If you have received this email
>> in error, please immediately notify the sender via telephone or return mail.
>>
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>
>
___
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Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
We've recently encountered similar problem in our Ubuntu 18.04 and solved
this by the followings:
Download Zlib 1.2.9 from here:
https://sourceforge.net/projects/libpng/files/zlib/1.2.9/zlib-1.2.9.tar.gz/download
tar -xvf ~/Downloads/zlib-1.2.9.tar.gz
cd zlib-1.2.9
./configure;
make;
make install;
cd ${your workbench dir}/libs_linux64
mv libz.so.1 libz.so.1.back
ln -sf /usr/local/lib/libz.so.1.2.9 libz.so.1
You may need to use 'sudo' to run some of commands to avoid permission
issue.
Takuya
2019年2月2日(土) 10:06 Glasser, Matthew :
> The person to address this is on vacation and will be back next week.
>
> Matt.
>
> From: on behalf of erik lee <
> erik.lee...@gmail.com>
> Date: Friday, February 1, 2019 at 6:20 PM
> To: "hcp-users@humanconnectome.org"
> Subject: [HCP-Users] Workbench tools installation in Ubuntu 18.04
>
> Hi,
>
> I am trying to install the Connectome Workbench software on my linux
> machine (Ubuntu 18.04). When I try to run wb_view or wb_command, I get the
> following error:
>
> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
> `ZLIB_1.2.9' not found (required by
> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
> /usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
> /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
> `ZLIB_1.2.3.4' not found (required by
> /usr/lib/x86_64-linux-gnu/libpng16.so.16)
>
> Does anyone know where to find these packages or how to get around this
> error??
>
> Thanks in advance,
> Erik
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> --
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
___
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Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
Thanks Takuya.
Matt.
From: Takuya Hayashi mailto:takuya.haya...@riken.jp>>
Date: Friday, February 1, 2019 at 8:23 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: erik lee mailto:erik.lee...@gmail.com>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
We've recently encountered similar problem in our Ubuntu 18.04 and solved this
by the followings:
Download Zlib 1.2.9 from here:
https://sourceforge.net/projects/libpng/files/zlib/1.2.9/zlib-1.2.9.tar.gz/download
tar -xvf ~/Downloads/zlib-1.2.9.tar.gz
cd zlib-1.2.9
./configure;
make;
make install;
cd ${your workbench dir}/libs_linux64
mv libz.so.1 libz.so.1.back
ln -sf /usr/local/lib/libz.so.1.2.9 libz.so.1
You may need to use 'sudo' to run some of commands to avoid permission issue.
Takuya
2019年2月2日(土) 10:06 Glasser, Matthew
mailto:glass...@wustl.edu>>:
The person to address this is on vacation and will be back next week.
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of erik lee mailto:erik.lee...@gmail.com>>
Date: Friday, February 1, 2019 at 6:20 PM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Workbench tools installation in Ubuntu 18.04
Hi,
I am trying to install the Connectome Workbench software on my linux machine
(Ubuntu 18.04). When I try to run wb_view or wb_command, I get the following
error:
/usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
/usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
`ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)
/usr/local/workbench/bin_linux64/../exe_linux64/wb_view:
/usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version
`ZLIB_1.2.3.4' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)
Does anyone know where to find these packages or how to get around this error??
Thanks in advance,
Erik
___
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The materials in this message are private and may contain Protected Healthcare
Information or other information of a sensitive nature. If you are not the
intended recipient, be advised that any unauthorized use, disclosure, copying
or the taking of any action in reliance on the contents of this information is
strictly prohibited. If you have received this email in error, please
immediately notify the sender via telephone or return mail.
___
HCP-Users mailing list
HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
The materials in this message are private and may contain Protected Healthcare
Information or other information of a sensitive nature. If you are not the
intended recipient, be advised that any unauthorized use, disclosure, copying
or the taking of any action in reliance on the contents of this information is
strictly prohibited. If you have received this email in error, please
immediately notify the sender via telephone or return mail.
___
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Re: [HCP-Users] Workbench tools installation in Ubuntu 18.04
The person to address this is on vacation and will be back next week. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of erik lee mailto:erik.lee...@gmail.com>> Date: Friday, February 1, 2019 at 6:20 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Workbench tools installation in Ubuntu 18.04 Hi, I am trying to install the Connectome Workbench software on my linux machine (Ubuntu 18.04). When I try to run wb_view or wb_command, I get the following error: /usr/local/workbench/bin_linux64/../exe_linux64/wb_view: /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16) /usr/local/workbench/bin_linux64/../exe_linux64/wb_view: /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version `ZLIB_1.2.3.4' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16) Does anyone know where to find these packages or how to get around this error?? Thanks in advance, Erik ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
[HCP-Users] Workbench tools installation in Ubuntu 18.04
Hi, I am trying to install the Connectome Workbench software on my linux machine (Ubuntu 18.04). When I try to run wb_view or wb_command, I get the following error: /usr/local/workbench/bin_linux64/../exe_linux64/wb_view: /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16) /usr/local/workbench/bin_linux64/../exe_linux64/wb_view: /usr/local/workbench/bin_linux64/../libs_linux64/libz.so.1: version `ZLIB_1.2.3.4' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16) Does anyone know where to find these packages or how to get around this error?? Thanks in advance, Erik ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
