Re: [Ifeffit] Larch version up problem
Hello Matt
Thank you for your kindness.
I simplified the ff2chi problem in multiprocessing. I found that the ff2chi
problem in multiprocessing is caused by receiving the arguments in an
object (TestClass).
For instance
The below code works in multiprocessing
-
class TestClass():
def __init__(self, out_path_lists):
self.path_lists=out_path_lists
def test(self):
path1 = feffpath(os.path.join(dPath,'FEFF1', fname1))
path_lists=[path1]
theory_sum=Group(label='theory_group_sum')
ff2chi(path_lists, group=theory_sum)
new_state=theory_sum.ch
However, If I change ff2chi(path_lists, group=theory_sum) to*
ff2chi(self.path_lists, group=theory_sum*), the ff2chi problem is caused.
Finally, I want to use multiprocessing. The xraylarch you sent does not
work in multiprocessing.
If you are possible, please send me larch 0.9.71 to reinstall
2024년 2월 7일 (수) 오전 7:37, Matt Newville 님이 작성:
> Hi Eun-Suk,
>
> Did you do
>python -m pip install
>
> https://millenia.cars.aps.anl.gov/xraylarch/downloads/xraylarch-latest-py3-none-any.whl
>
> ?
> That will install the development version (later than 0.9.74, not yet
> 0.9.75, sorry for that delay). This works for me:
>
> from larch.xafs import feffpath
> p1 = feffpath('feff0001.dat', e0=-1, sigma2=0.010)
> p1.s02 = 0.95
> dat = ff2chi([p1])
>
> I don't know of any multiprocessing problem...
>
> Cheers,
>
> On Tue, Feb 6, 2024 at 11:05 PM 정은석 wrote:
> >
> > Hello Matt.
> >
> > I think that you need some time to fix the 'multi-processing problem of
> 0. 9.74'. If you take a little long time to fix it, can you send me
> xraylarch version 0.9.71? or could you inform me of the site of the old
> version?
> > I will reinstall xraylarch with it.
> >
> > Thank you for your effort and contribution
> >
> > 2024년 2월 5일 (월) 오후 5:09, 정은석 님이 작성:
> >>
> >> Hello Matt
> >>
> >> I changed my original code to simple code for you as below.
> >> I found the problem of larch 0.9.74 in multi-processing.
> >> You can check it with the below code. How can I fix this problem?
> >>
> >>
>
> >> # Multi-processing test
> >> import larch
> >> from larch import Group
> >> from larch.utils import *
> >> from larch.xafs import *
> >> from larch.io import *
> >>
> >> import numpy as np
> >> import os
> >> import torch.multiprocessing as mp
> >>
> >> dPath = r'C:\Users\Administrator\Desktop\RL\feffit_error_test'
> >> os.chdir(dPath)
> >> fname1 = 'feff0001.dat' # N=1, Reff=1.9 N
> >>
> >> path1 = feffpath(os.path.join(dPath,'FEFF1', fname1))
> >> #
> >> path_lists=[path1]
> >> path_lists[0].s02=0.86
> >>
> >>
> >> class Func():
> >> def __init__(self, path_lists):
> >> self.path_lists=path_lists
> >>
> >> def step(self):
> >> self.path_lists[0].e0, self.path_lists[0].degen,
> self.path_lists[0].deltar, self.path_lists[0].sigma2 = [2, 5, 0.001, 0.004]
> >> ## Theory path들의 합과 theory FFT
> >> theory_sum=Group(label='theory_group_sum')
> >> ff2chi(self.path_lists, group=theory_sum)
> >> new_state=theory_sum.chi
> >> return new_state
> >>
> >> class TestClass():
> >> def __init__(self, path_lists):
> >> self.path_lists=path_lists
> >>
> >> def test(self):
> >> func1 = Func(self.path_lists)
> >> s=func1.step()
> >>
> >>
> >> T_func=TestClass(path_lists)
> >> F_func=Func(path_lists)
> >>
> >> if __name__ == '__main__':
> >> process_list=[]
> >> p_N =mp.Process(target=T_func.test,)
> >> p_N.start()
> >> process_list.append(p_N)
> >> for process in process_list:
> >> process.join()
> >> ##
> >> #Problem##
> >> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
> line 314, in _bootstrap
> >> self.run()
> >> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
> line 108, in run
> >> self._target(*self._args, **self._kwargs)
> >> File
> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
> line 40, in test
> >> s=func1.step()
> >>
> >> File
> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
> line 30, in step
> >> ff2chi(self.path_lists, group=theory_sum)
> >> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
> line 658, in ff2chi
> >> path.create_path_params(params=params)
> >> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
> line 392, in create_path_params
> >> parname = self.pathpar_name(pname)
Re: [Ifeffit] Larch version up problem
Hi Eun-Suk,
Did you do
python -m pip install
https://millenia.cars.aps.anl.gov/xraylarch/downloads/xraylarch-latest-py3-none-any.whl
?
That will install the development version (later than 0.9.74, not yet
0.9.75, sorry for that delay). This works for me:
from larch.xafs import feffpath
p1 = feffpath('feff0001.dat', e0=-1, sigma2=0.010)
p1.s02 = 0.95
dat = ff2chi([p1])
I don't know of any multiprocessing problem...
Cheers,
On Tue, Feb 6, 2024 at 11:05 PM 정은석 wrote:
>
> Hello Matt.
>
> I think that you need some time to fix the 'multi-processing problem of 0.
> 9.74'. If you take a little long time to fix it, can you send me xraylarch
> version 0.9.71? or could you inform me of the site of the old version?
> I will reinstall xraylarch with it.
>
> Thank you for your effort and contribution
>
> 2024년 2월 5일 (월) 오후 5:09, 정은석 님이 작성:
>>
>> Hello Matt
>>
>> I changed my original code to simple code for you as below.
>> I found the problem of larch 0.9.74 in multi-processing.
>> You can check it with the below code. How can I fix this problem?
>>
>>
>> # Multi-processing test
>> import larch
>> from larch import Group
>> from larch.utils import *
>> from larch.xafs import *
>> from larch.io import *
>>
>> import numpy as np
>> import os
>> import torch.multiprocessing as mp
>>
>> dPath = r'C:\Users\Administrator\Desktop\RL\feffit_error_test'
>> os.chdir(dPath)
>> fname1 = 'feff0001.dat' # N=1, Reff=1.9 N
>>
>> path1 = feffpath(os.path.join(dPath,'FEFF1', fname1))
>> #
>> path_lists=[path1]
>> path_lists[0].s02=0.86
>>
>>
>> class Func():
>> def __init__(self, path_lists):
>> self.path_lists=path_lists
>>
>> def step(self):
>> self.path_lists[0].e0, self.path_lists[0].degen,
>> self.path_lists[0].deltar, self.path_lists[0].sigma2 = [2, 5, 0.001, 0.004]
>> ## Theory path들의 합과 theory FFT
>> theory_sum=Group(label='theory_group_sum')
>> ff2chi(self.path_lists, group=theory_sum)
>> new_state=theory_sum.chi
>> return new_state
>>
>> class TestClass():
>> def __init__(self, path_lists):
>> self.path_lists=path_lists
>>
>> def test(self):
>> func1 = Func(self.path_lists)
>> s=func1.step()
>>
>>
>> T_func=TestClass(path_lists)
>> F_func=Func(path_lists)
>>
>> if __name__ == '__main__':
>> process_list=[]
>> p_N =mp.Process(target=T_func.test,)
>> p_N.start()
>> process_list.append(p_N)
>> for process in process_list:
>> process.join()
>> ##
>> #Problem##
>> File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
>> line 314, in _bootstrap
>> self.run()
>> File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
>> line 108, in run
>> self._target(*self._args, **self._kwargs)
>> File
>> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
>> line 40, in test
>> s=func1.step()
>>
>> File
>> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
>> line 30, in step
>> ff2chi(self.path_lists, group=theory_sum)
>> File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
>> line 658, in ff2chi
>> path.create_path_params(params=params)
>> File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
>> line 392, in create_path_params
>> parname = self.pathpar_name(pname)
>>
>> File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
>> line 331, in pathpar_name
>> return f'{parname}_{self.dataset}_{self.hashkey}'
>>
>> AttributeError: 'FeffPathGroup' object has no attribute 'dataset'
>>
>>
>> 2024년 2월 5일 (월) 오전 4:44, Matt Newville 님이 작성:
>>>
>>> Hi Eun-Suk,
>>>
>>> All the examples with ff2chi and running feffit work for me. I sort
>>> of don't understand how that could happen (a FeffPathGroup does -- or
>>> should -- have a `dataset` attribute).
>>>
>>> Can you provide an example that shows the problem?
>>>
>>> --Matt
>>> ___
>>> Ifeffit mailing list
>>> Ifeffit@millenia.cars.aps.anl.gov
>>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>>> Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
>>
>>
>>
>> --
>> Best regards,
>>
>> Ph. D. Eun-Suk Jeong
>> X-ray absorption fine structure(EXAFS+XANES)
>> Mobile:+82-10-4628-9896
>>
>>
>
>
> --
> Best regards,
>
> Ph. D. Eun-Suk Jeong
> X-ray absorption fine structure(EXAFS+XANES)
>
Re: [Ifeffit] Larch version up problem
Hello Matt.
I think that you need some time to fix the 'multi-processing problem of 0.
9.74'. If you take a little long time to fix it, can you send me xraylarch
version 0.9.71? or could you inform me of the site of the old version?
I will reinstall xraylarch with it.
Thank you for your effort and contribution
2024년 2월 5일 (월) 오후 5:09, 정은석 님이 작성:
> Hello Matt
>
> I changed my original code to simple code for you as below.
> I found the problem of larch 0.9.74 in multi-processing.
> You can check it with the below code. How can I fix this problem?
>
>
>
> # Multi-processing test
> import larch
> from larch import Group
> from larch.utils import *
> from larch.xafs import *
> from larch.io import *
>
> import numpy as np
> import os
> import torch.multiprocessing as mp
>
> dPath = r'C:\Users\Administrator\Desktop\RL\feffit_error_test'
> os.chdir(dPath)
> fname1 = 'feff0001.dat' # N=1, Reff=1.9 N
>
> path1 = feffpath(os.path.join(dPath,'FEFF1', fname1))
> #
> path_lists=[path1]
> path_lists[0].s02=0.86
>
>
> class Func():
> def __init__(self, path_lists):
> self.path_lists=path_lists
>
> def step(self):
> self.path_lists[0].e0, self.path_lists[0].degen,
> self.path_lists[0].deltar, self.path_lists[0].sigma2 = [2, 5, 0.001, 0.004]
> ## Theory path들의 합과 theory FFT
> theory_sum=Group(label='theory_group_sum')
> ff2chi(self.path_lists, group=theory_sum)
> new_state=theory_sum.chi
> return new_state
>
> class TestClass():
> def __init__(self, path_lists):
> self.path_lists=path_lists
>
> def test(self):
> func1 = Func(self.path_lists)
> s=func1.step()
>
>
> T_func=TestClass(path_lists)
> F_func=Func(path_lists)
>
> if __name__ == '__main__':
> process_list=[]
> p_N =mp.Process(target=T_func.test,)
> p_N.start()
> process_list.append(p_N)
> for process in process_list:
> process.join()
> ##
> #Problem##
> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
> line 314, in _bootstrap
> self.run()
> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
> line 108, in run
> self._target(*self._args, **self._kwargs)
> File
> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
> line 40, in test
> s=func1.step()
>
> File
> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
> line 30, in step
> ff2chi(self.path_lists, group=theory_sum)
> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
> line 658, in ff2chi
> path.create_path_params(params=params)
> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
> line 392, in create_path_params
> parname = self.pathpar_name(pname)
>
> File
> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
> line 331, in pathpar_name
> return f'{parname}_{self.dataset}_{self.hashkey}'
>
> AttributeError: 'FeffPathGroup' object has no attribute 'dataset'
>
>
> 2024년 2월 5일 (월) 오전 4:44, Matt Newville 님이 작성:
>
>> Hi Eun-Suk,
>>
>> All the examples with ff2chi and running feffit work for me. I sort
>> of don't understand how that could happen (a FeffPathGroup does -- or
>> should -- have a `dataset` attribute).
>>
>> Can you provide an example that shows the problem?
>>
>> --Matt
>> ___
>> Ifeffit mailing list
>> Ifeffit@millenia.cars.aps.anl.gov
>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>> Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
>>
>
>
> --
> Best regards,
>
> Ph. D. Eun-Suk Jeong
> X-ray absorption fine structure(EXAFS+XANES)
> Mobile:+82-10-4628-9896
>
>
>
--
Best regards,
Ph. D. Eun-Suk Jeong
X-ray absorption fine structure(EXAFS+XANES)
Mobile:+82-10-4628-9896
___
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Re: [Ifeffit] Larch version up problem
Hello Matt
I changed my original code to simple code for you as below.
I found the problem of larch 0.9.74 in multi-processing.
You can check it with the below code. How can I fix this problem?
# Multi-processing test
import larch
from larch import Group
from larch.utils import *
from larch.xafs import *
from larch.io import *
import numpy as np
import os
import torch.multiprocessing as mp
dPath = r'C:\Users\Administrator\Desktop\RL\feffit_error_test'
os.chdir(dPath)
fname1 = 'feff0001.dat' # N=1, Reff=1.9 N
path1 = feffpath(os.path.join(dPath,'FEFF1', fname1))
#
path_lists=[path1]
path_lists[0].s02=0.86
class Func():
def __init__(self, path_lists):
self.path_lists=path_lists
def step(self):
self.path_lists[0].e0, self.path_lists[0].degen,
self.path_lists[0].deltar, self.path_lists[0].sigma2 = [2, 5, 0.001, 0.004]
## Theory path들의 합과 theory FFT
theory_sum=Group(label='theory_group_sum')
ff2chi(self.path_lists, group=theory_sum)
new_state=theory_sum.chi
return new_state
class TestClass():
def __init__(self, path_lists):
self.path_lists=path_lists
def test(self):
func1 = Func(self.path_lists)
s=func1.step()
T_func=TestClass(path_lists)
F_func=Func(path_lists)
if __name__ == '__main__':
process_list=[]
p_N =mp.Process(target=T_func.test,)
p_N.start()
process_list.append(p_N)
for process in process_list:
process.join()
##
#Problem##
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
line 314, in _bootstrap
self.run()
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\multiprocessing\process.py",
line 108, in run
self._target(*self._args, **self._kwargs)
File
"c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
line 40, in test
s=func1.step()
File
"c:\Users\Administrator\Desktop\RL\feffit_error_test\test-ff2chi-problem.py",
line 30, in step
ff2chi(self.path_lists, group=theory_sum)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 658, in ff2chi
path.create_path_params(params=params)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 392, in create_path_params
parname = self.pathpar_name(pname)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 331, in pathpar_name
return f'{parname}_{self.dataset}_{self.hashkey}'
AttributeError: 'FeffPathGroup' object has no attribute 'dataset'
2024년 2월 5일 (월) 오전 4:44, Matt Newville 님이 작성:
> Hi Eun-Suk,
>
> All the examples with ff2chi and running feffit work for me. I sort
> of don't understand how that could happen (a FeffPathGroup does -- or
> should -- have a `dataset` attribute).
>
> Can you provide an example that shows the problem?
>
> --Matt
> ___
> Ifeffit mailing list
> Ifeffit@millenia.cars.aps.anl.gov
> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
> Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
>
--
Best regards,
Ph. D. Eun-Suk Jeong
X-ray absorption fine structure(EXAFS+XANES)
Mobile:+82-10-4628-9896
___
Ifeffit mailing list
Ifeffit@millenia.cars.aps.anl.gov
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Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
Re: [Ifeffit] Larch version up problem
Hi Eun-Suk, All the examples with ff2chi and running feffit work for me. I sort of don't understand how that could happen (a FeffPathGroup does -- or should -- have a `dataset` attribute). Can you provide an example that shows the problem? --Matt ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
Re: [Ifeffit] Larch version up problem
Hello Matt
I am sorry to bother you.
I have another problem regarding ff2chi.
This problem is similar to the previous one. Could you check it?
---
File
"c:\Users\Administrator\Desktop\RL\RL-EXAFS\RL_fitting\chi_state_step_RL\Pt-foil\modules\FuncEnv.py",
line 233, in step
ff2chi(self.path_lists, group=theory_sum)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 658, in ff2chi
path.create_path_params(params=params)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 392, in create_path_params
parname = self.pathpar_name(pname)
File
"C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffdat.py",
line 331, in pathpar_name
return f'{parname}_{self.dataset}_{self.hashkey}'
AttributeError: 'FeffPathGroup' object has no attribute 'dataset'
---
where self.path_lists indicates the list of path, for example,
self.path_lists=[path1, path2, path3]
2024년 2월 4일 (일) 오후 2:38, 정은석 님이 작성:
> Hello Matt.
>
> Thank you for your help.
> I solved my problem through your comments.
>
> Your larch code in python gives me a great opportunity to build a new
> system.
>
> Thank you again and have a great trip :)
>
> 2024년 2월 4일 (일) 오전 12:59, Matt Newville 님이 작성:
>
>> Hi Eun-Suk,
>>
>> Sorry for the trouble. I think this should have worked with 0.9.74,
>> but I also know that I already changed that section of code to avoid
>> similar problems. It should work to do
>>python -m pip install
>>
>> https://millenia.cars.aps.anl.gov/xraylarch/downloads/xraylarch-latest-py3-none-any.whl
>>
>> I think this is a pretty stable version, but I still have a small list
>> of things I would like to improve before releasing 0.9.75. I have not
>> had a lot of time in January for coding and will be traveling for the
>> next couple of weeks, but talking about software a lot during that
>> time ;).
>>
>> Hope that helps, and thanks for your patience.
>>
>> On Fri, Feb 2, 2024 at 4:06 PM 정은석 wrote:
>> >
>> > Hello~
>> >
>> > I used Larch 0.9.71. until now. However, I would like to update larch
>> and I reinstall anaconda and larch.
>> > I installed Larch 0.9.74. as following installation guide
>> > I didn't have any problems during the installation process. However, I
>> faced problems during feffit fitting.
>> > Before, I used feffit fitting in larch 0.9.71., and then I hadn't had
>> any problems.
>> >
>> > I only changed larch as new version. What am I doing?
>> >
>> > When I run feffit fitting, I have debugs as the below:
>> >
>> -
>> > File
>> "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-feffit.py", line
>> 51, in
>> > out = feffit(pars, dset)
>> > ^^
>> > File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py",
>> line 645, in feffit
>> > ds.prepare_fit(params=params, other_hashkeys=dset_hashkeys)
>> > File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py",
>> line 374, in prepare_fit
>> > self._generate_hashkey(other_hashkeys=other_hashkeys)
>> > File
>> "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py",
>> line 291, in _generate_hashkey
>> > dat = [self.data.ek0, self.data.e0, self.data.rbkg]
>> >^
>> > AttributeError: 'Group' object has no attribute 'ek0'
>> >
>> --
>> >
>> >
>> >
>> > --
>> > Best regards,
>> >
>> > Ph. D. Eun-Suk Jeong
>> > X-ray absorption fine structure(EXAFS+XANES)
>> > Mobile:+82-10-4628-9896
>> >
>> >
>> > ___
>> > Ifeffit mailing list
>> > Ifeffit@millenia.cars.aps.anl.gov
>> > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>> > Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
>>
>>
>>
>> --
>> --Matt Newville 630-327-7411
>>
>> ___
>> Ifeffit mailing list
>> Ifeffit@millenia.cars.aps.anl.gov
>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>> Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
>>
>
>
> --
> Best regards,
>
> Ph. D. Eun-Suk Jeong
> X-ray absorption fine structure(EXAFS+XANES)
> Mobile:+82-10-4628-9896
>
>
>
--
Best regards,
Ph. D. Eun-Suk Jeong
X-ray absorption fine structure(EXAFS+XANES)
Mobile:+82-10-4628-9896
___
Ifeffit mailing list
Ifeffit@millenia.cars.aps.anl.gov
Re: [Ifeffit] Larch version up problem
Hello Matt. Thank you for your help. I solved my problem through your comments. Your larch code in python gives me a great opportunity to build a new system. Thank you again and have a great trip :) 2024년 2월 4일 (일) 오전 12:59, Matt Newville 님이 작성: > Hi Eun-Suk, > > Sorry for the trouble. I think this should have worked with 0.9.74, > but I also know that I already changed that section of code to avoid > similar problems. It should work to do >python -m pip install > > https://millenia.cars.aps.anl.gov/xraylarch/downloads/xraylarch-latest-py3-none-any.whl > > I think this is a pretty stable version, but I still have a small list > of things I would like to improve before releasing 0.9.75. I have not > had a lot of time in January for coding and will be traveling for the > next couple of weeks, but talking about software a lot during that > time ;). > > Hope that helps, and thanks for your patience. > > On Fri, Feb 2, 2024 at 4:06 PM 정은석 wrote: > > > > Hello~ > > > > I used Larch 0.9.71. until now. However, I would like to update larch > and I reinstall anaconda and larch. > > I installed Larch 0.9.74. as following installation guide > > I didn't have any problems during the installation process. However, I > faced problems during feffit fitting. > > Before, I used feffit fitting in larch 0.9.71., and then I hadn't had > any problems. > > > > I only changed larch as new version. What am I doing? > > > > When I run feffit fitting, I have debugs as the below: > > > - > > File > "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-feffit.py", line > 51, in > > out = feffit(pars, dset) > > ^^ > > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 645, in feffit > > ds.prepare_fit(params=params, other_hashkeys=dset_hashkeys) > > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 374, in prepare_fit > > self._generate_hashkey(other_hashkeys=other_hashkeys) > > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 291, in _generate_hashkey > > dat = [self.data.ek0, self.data.e0, self.data.rbkg] > >^ > > AttributeError: 'Group' object has no attribute 'ek0' > > > -- > > > > > > > > -- > > Best regards, > > > > Ph. D. Eun-Suk Jeong > > X-ray absorption fine structure(EXAFS+XANES) > > Mobile:+82-10-4628-9896 > > > > > > ___ > > Ifeffit mailing list > > Ifeffit@millenia.cars.aps.anl.gov > > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > > Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit > > > > -- > --Matt Newville 630-327-7411 > > ___ > Ifeffit mailing list > Ifeffit@millenia.cars.aps.anl.gov > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit > -- Best regards, Ph. D. Eun-Suk Jeong X-ray absorption fine structure(EXAFS+XANES) Mobile:+82-10-4628-9896 ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
Re: [Ifeffit] Larch version up problem
Hi Eun-Suk, Sorry for the trouble. I think this should have worked with 0.9.74, but I also know that I already changed that section of code to avoid similar problems. It should work to do python -m pip install https://millenia.cars.aps.anl.gov/xraylarch/downloads/xraylarch-latest-py3-none-any.whl I think this is a pretty stable version, but I still have a small list of things I would like to improve before releasing 0.9.75. I have not had a lot of time in January for coding and will be traveling for the next couple of weeks, but talking about software a lot during that time ;). Hope that helps, and thanks for your patience. On Fri, Feb 2, 2024 at 4:06 PM 정은석 wrote: > > Hello~ > > I used Larch 0.9.71. until now. However, I would like to update larch and I > reinstall anaconda and larch. > I installed Larch 0.9.74. as following installation guide > I didn't have any problems during the installation process. However, I faced > problems during feffit fitting. > Before, I used feffit fitting in larch 0.9.71., and then I hadn't had any > problems. > > I only changed larch as new version. What am I doing? > > When I run feffit fitting, I have debugs as the below: > - > File "c:\Users\Administrator\Desktop\RL\feffit_error_test\test-feffit.py", > line 51, in > out = feffit(pars, dset) > ^^ > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 645, in feffit > ds.prepare_fit(params=params, other_hashkeys=dset_hashkeys) > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 374, in prepare_fit > self._generate_hashkey(other_hashkeys=other_hashkeys) > File > "C:\ProgramData\anaconda3\envs\xraylarch\Lib\site-packages\larch\xafs\feffit.py", > line 291, in _generate_hashkey > dat = [self.data.ek0, self.data.e0, self.data.rbkg] >^ > AttributeError: 'Group' object has no attribute 'ek0' > -- > > > > -- > Best regards, > > Ph. D. Eun-Suk Jeong > X-ray absorption fine structure(EXAFS+XANES) > Mobile:+82-10-4628-9896 > > > ___ > Ifeffit mailing list > Ifeffit@millenia.cars.aps.anl.gov > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- --Matt Newville 630-327-7411 ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit
