Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Bruce Ravel]

On 12/01/2016 01:20 PM, mfehse wrote:


and am now able to launch the athena and it seems to work, however i
still get the error message:
"Could not find Larch Server -- falling back to Ifeffit"
is this something i should care about?


Nope.

It's a message that will eventually go away.  Right now, Matt and I are 
working on migrating to Larch.  This week we have been figuring out how 
to make Athena's interaction with Larch work reliably.  That message is 
there so that I know what is going on while I am working on the code. 
In this case, it is Demeter telling you that it is gracefully 
recognizing that you do not have Larch installed.


If you don't want to be looking at the head of the main branch, then you 
could download the zip file for the most recently tagged release:

https://github.com/bruceravel/demeter/tree/0.9.25

B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS-II
 Building 743, Room 114
 Upton NY, 11973

 Homepage:http://bruceravel.github.io/home/
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Bruce Ravel]

Sorry.  That wasn't quite right.

At the command line:

  DEMETER_FORCE_IFEFFIT=1 dathena

to force the use of Ifeffit in that instance of Athena.

Or,

  export DEMETER_FORCE_IFEFFIT=1

later,

  dathena

That forces the use of Ifeffit in that instance of the shell so that, 
later, when you fire up Athena, it uses Ifeffit.


Or put the "export" line in your .bashrc to make it persist the next 
time you log in.


B


On 12/01/2016 01:18 PM, Bruce Ravel wrote:

On 12/01/2016 12:57 PM, Juan de la figuera wrote:


Is there a switch in demeter to select the backend? Or in other words,
to go back to ifeffit, should I delete the larch binaries?


At the command line:

   export DEMETER_FORCE_IFEFFIT=1 dathena

or put

   export DEMETER_FORCE_IFEFFIT=1

in your ~/.bashrc file

B





--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS-II
 Building 743, Room 114
 Upton NY, 11973

 Homepage:http://bruceravel.github.io/home/
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[mfehse]

hi

thanks for the hint, I installed the following gnuplot packages
libgnuplot-iostream-dev
libalien-gnuplot-perl
libchart-gnuplot-perl
libgraph-writer-dsm-perl
libgraphics-gnuplotif-perl
libpdl-graphics-gnuplot-perl

and am now able to launch the athena and it seems to work, however i 
still get the error message:

"Could not find Larch Server -- falling back to Ifeffit"
is this something i should care about?


many thanks


On 01/12/2016 15:21, Bruce Ravel wrote:

On 12/01/2016 09:12 AM, mfehse wrote:

In my struggle to install demeter under ubuntu 16.04 I'm slowly
advancing. I think some of the packages that were supposed to be
installed following the first line of the protocol were incomplete. I
have redone this and have now managed to build the dathena and other
files, but when I want to start it I get the following error message:


"marquinhos@marquinhos-Lapi:~/demeter$ bin/dathena

Could not find Larch Server -- falling back to Ifeffit
Can't locate object method "new" via package "Graphics::GnuplotIF" at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter.pm
line 239.
Compilation failed in require at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
line 24.
BEGIN failed--compilation aborted at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
line 24.
Compilation failed in require at bin/dathena line 27.
BEGIN failed--compilation aborted at bin/dathena line 27.
Can't exec "-p": No such file or directory at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Larch.pm
line 270.
"

any ideas what might be the problem?



That seems to be saying that Graphics::GnuplotIF is not installed.

It should have been installed when you did the "./Build installdeps" 
step.


B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS-II
 Building 743, Room 114
 Upton NY, 11973

 Homepage:http://bruceravel.github.io/home/
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Bruce Ravel]

On 12/01/2016 12:57 PM, Juan de la figuera wrote:


Is there a switch in demeter to select the backend? Or in other words,
to go back to ifeffit, should I delete the larch binaries?


At the command line:

   export DEMETER_FORCE_IFEFFIT=1 dathena

or put

   export DEMETER_FORCE_IFEFFIT=1

in your ~/.bashrc file

B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS-II
 Building 743, Room 114
 Upton NY, 11973

 Homepage:http://bruceravel.github.io/home/
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Juan de la figuera]

Hi to all,

Is there a switch in demeter to select the backend? Or in other words, to
go back to ifeffit, should I delete the larch binaries?

Juan


Juan de la Figuera
Instituto de Quimica-Fisica Rocasolano
c/ serrano, 119
Madrid, Spain 28006
Phone: +34 91 745 9517
http://surfmoss.iqfr.csic.es/juandelafiguera

http://scholar.google.com/citations?user=GOiP624J
-

On Thu, Dec 1, 2016 at 5:52 PM, Robert Gordon 
wrote:

> Hi,
>
> I installed demeter recently under 16.04 lts. In response to Juan's
> issues, I described what I did here:
>
> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2016-Nove
> mber/00.html
>
> One additional deviation was that I had already installed gfortran and
> gunplot (sudo apt install)
> beforehand.
>
> Matt noted in the next message that a larch issue needs addressing when
> importing files
>
> http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2016-Nove
> mber/008889.html
>
> but the ifeffit backend works.
>
> I haven't tried everything, but reading and processing a file in Athena
> works fine.
>
> -R.
>
>
> On 12/1/2016 6:21 AM, Bruce Ravel wrote:
>
>> On 12/01/2016 09:12 AM, mfehse wrote:
>>
>>> In my struggle to install demeter under ubuntu 16.04 I'm slowly
>>> advancing. I think some of the packages that were supposed to be
>>> installed following the first line of the protocol were incomplete. I
>>> have redone this and have now managed to build the dathena and other
>>> files, but when I want to start it I get the following error message:
>>>
>>>
>>> "marquinhos@marquinhos-Lapi:~/demeter$ bin/dathena
>>>
>>> Could not find Larch Server -- falling back to Ifeffit
>>> Can't locate object method "new" via package "Graphics::GnuplotIF" at
>>> /home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter.pm
>>>
>>> line 239.
>>> Compilation failed in require at
>>> /home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
>>>
>>> line 24.
>>> BEGIN failed--compilation aborted at
>>> /home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
>>>
>>> line 24.
>>> Compilation failed in require at bin/dathena line 27.
>>> BEGIN failed--compilation aborted at bin/dathena line 27.
>>> Can't exec "-p": No such file or directory at
>>> /home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Larch.pm
>>>
>>> line 270.
>>> "
>>>
>>> any ideas what might be the problem?
>>>
>>
>>
>> That seems to be saying that Graphics::GnuplotIF is not installed.
>>
>> It should have been installed when you did the "./Build installdeps" step.
>>
>> B
>>
>>
>>
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Robert Gordon]

Hi,

I installed demeter recently under 16.04 lts. In response to Juan's 
issues, I described what I did here:


http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2016-November/00.html

One additional deviation was that I had already installed gfortran and 
gunplot (sudo apt install)

beforehand.

Matt noted in the next message that a larch issue needs addressing when 
importing files


http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2016-November/008889.html

but the ifeffit backend works.

I haven't tried everything, but reading and processing a file in Athena 
works fine.


-R.

On 12/1/2016 6:21 AM, Bruce Ravel wrote:

On 12/01/2016 09:12 AM, mfehse wrote:

In my struggle to install demeter under ubuntu 16.04 I'm slowly
advancing. I think some of the packages that were supposed to be
installed following the first line of the protocol were incomplete. I
have redone this and have now managed to build the dathena and other
files, but when I want to start it I get the following error message:


"marquinhos@marquinhos-Lapi:~/demeter$ bin/dathena

Could not find Larch Server -- falling back to Ifeffit
Can't locate object method "new" via package "Graphics::GnuplotIF" at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter.pm 


line 239.
Compilation failed in require at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm 


line 24.
BEGIN failed--compilation aborted at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm 


line 24.
Compilation failed in require at bin/dathena line 27.
BEGIN failed--compilation aborted at bin/dathena line 27.
Can't exec "-p": No such file or directory at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Larch.pm 


line 270.
"

any ideas what might be the problem?



That seems to be saying that Graphics::GnuplotIF is not installed.

It should have been installed when you did the "./Build installdeps" 
step.


B




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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[Bruce Ravel]

On 12/01/2016 09:12 AM, mfehse wrote:

In my struggle to install demeter under ubuntu 16.04 I'm slowly
advancing. I think some of the packages that were supposed to be
installed following the first line of the protocol were incomplete. I
have redone this and have now managed to build the dathena and other
files, but when I want to start it I get the following error message:


"marquinhos@marquinhos-Lapi:~/demeter$ bin/dathena

Could not find Larch Server -- falling back to Ifeffit
Can't locate object method "new" via package "Graphics::GnuplotIF" at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter.pm
line 239.
Compilation failed in require at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
line 24.
BEGIN failed--compilation aborted at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm
line 24.
Compilation failed in require at bin/dathena line 27.
BEGIN failed--compilation aborted at bin/dathena line 27.
Can't exec "-p": No such file or directory at
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Larch.pm
line 270.
"

any ideas what might be the problem?



That seems to be saying that Graphics::GnuplotIF is not installed.

It should have been installed when you did the "./Build installdeps" step.

B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS-II
 Building 743, Room 114
 Upton NY, 11973

 Homepage:http://bruceravel.github.io/home/
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] struggling to install demeter under ubuntu 16.04

[mfehse]

Hi
In my struggle to install demeter under ubuntu 16.04 I'm slowly 
advancing. I think some of the packages that were supposed to be 
installed following the first line of the protocol were incomplete. I 
have redone this and have now managed to build the dathena and other 
files, but when I want to start it I get the following error message:



"marquinhos@marquinhos-Lapi:~/demeter$ bin/dathena

Could not find Larch Server -- falling back to Ifeffit
Can't locate object method "new" via package "Graphics::GnuplotIF" at 
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter.pm line 239.
Compilation failed in require at 
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm line 24.
BEGIN failed--compilation aborted at 
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Demeter/UI/Athena.pm line 24.

Compilation failed in require at bin/dathena line 27.
BEGIN failed--compilation aborted at bin/dathena line 27.
Can't exec "-p": No such file or directory at 
/home/marquinhos/perl5/lib/perl5/i686-linux-gnu-thread-multi-64int/Larch.pm line 270.

"

any ideas what might be the problem?

many thanks



On 30/11/2016 14:53, mfehse wrote:

Hi
im trying to install demeter under ubuntu 16.04 following the protocol
given by david hughes
https://bruceravel.github.io/demeter/documents/SinglePage/demeter_nonroot.html

I have followed through all steps but I encountered a few errors when
doing the /Build install and when i want to run the application by
"dathena" i get the following:

marquinhos@marquinhos-Lapi:~/demeter$ dathena
No command 'dathena' found, did you mean:
 Command 'athena' from package 'horae' (multiverse)
dathena: command not found


I have attached the error file to this mail produced via "./Build test
| tee ~/test_errors.txt"


thanks in advance

marcus

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