[Jmol-users] isosurfaceData as JVXL string

2013-12-28 Thread Jaime Prilusky
What's the correct syntax to get from JSmol applet the isosurface data as JVXL 
string in javascript?

I guess that some variation of Jmol.getPropertyAsJavaObject(jmolApplet0, 
isosurfaceData) could do.

Thank you in advance,

Happy Holidays,
Jaim




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[Jmol-users] iPad reserved term

2013-12-28 Thread Philip Bays
One of my tutorials which does not involve jmol and has run for many years on 
all sorts of computerist and OS's, fails to run correctly on the iPad.  I have 
tested it one early and late models and versions of iOS.  I was looking at the 
code this week to try to figure out why and narrowed the issue down to a 
declared global array which was not being read.  My son and I then tried to 
figure out why — clearly read on anything but an iPad on which it returns 
“undefined.  On a whim he changed the name of the array and all dependencies; 
things worked.

The array was originally named: orientation[ ].  It appears that the term 
“orientation” is reserved by iOS for a 90° rotation of the device.  Insert an 
alert using orientation into your javascript and see what happens.

Since we are concerned about molecular orientations, this is a warning to not 
use that term as a variable name in javascript, unless you mean it:-)


Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
pb...@saintmarys.edu



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[Jmol-users] Will unsigned applet be blocked soon?

2013-12-28 Thread Eric Martz
When running the unsigned Jmol applet under Java 1.7.0_45, I have 
seen a red notice that in future, unsigned applets will not be allowed.

FirstGlance in Jmol is currently using the unsigned Jmol applet 13.0.15.

To avoid having FirstGlance in Jmol stop working in a forthcoming 
Java update, should I configure it to use only the signed Jmol applet?

And would that need to be signed Jmol applet 14.0 in order to be 
properly signed?

Thanks, Eric


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