FirstGlance in Jmol looks absolutely terrific, Eric. Such a very clean
interface. I think when you upgrade to 11.0 you will see many fixes. For
example, rockets in 1blu. Would you consider providing users the option
to use Jmol 11.0 at least?
Bob
Eric Martz wrote:
Two days ago, I noticed that FirstGlance in Jmol (version 1.0) could
not select DNA chains by clicking (in the Hide.. or Contacts..
dialogs). This was a result of the changes in the remediated PDB
format that changed all PDB files on August 1, 2007
(http://www.wwpdb.org). I have fixed this at
http://firstglance.jmol.org (now version 1.01) which went public yesterday.
It is also fixed in Beta FirstGlance in Jmol 1.39 (available through
a new link at the bottom of the main page at
http://firstglance.jmol.org). This version has a better display for
Charge.., but its development, documentation, and testing are not
yet complete. It is used for the ConSurf, Pepitope, and Selecton
servers, and the OCA PDB service.
I have also updated the list of adoptions and adaptations of
FirstGlance in Jmol.
-Eric
/* - - - - - - - - - - - - - - - - - - - - - - - - - - -
Eric Martz, Professor Emeritus, Dept Microbiology
U Mass, Amherst -- http://www.umass.edu/molvis/martz
Biochem 3D Education Resources http://MolviZ.org
See 3D Molecules, Install Nothing! - http://firstglance.jmol.org
Protein Explorer - 3D Visualization: http://proteinexplorer.org
Workshops: http://workshops.proteinexplorer.org
World Index of Molecular Visualization Resources: http://molvisindex.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://atlas.proteinexplorer.org
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List (molvis-list):
http://bioinformatics.org/mailman/listinfo/molvis-list
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Professor of Chemistry
St. Olaf College
Northfield, MN
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If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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