Re: [Jmol-users] Jmol 14.20.2 - replaces 14.20.1

2017-07-12 Thread Robert Hanson
Ah, I see it, too, now in IE 11. OK, I will look into that.



On Wed, Jul 12, 2017 at 1:40 PM, Bruce Tattershall <
bruce.tattersh...@newcastle.ac.uk> wrote:

> Thanks Bob
>
>
>
> I haven’t been able to break the JSMol chirality finder using Chrome in a
> Windows 7 PC nor using
>
> Firefox 52.2 in Linux, in this version, in contrast to version 14.20.1, so
> we are another step
>
> forward.
>
>
>
> However it still fails as before in IE11 or in Firefox 22 in a PC.
>
> To avoid any possibility of cache trouble, I used two different other user
> ids and a public PC rather than
>
> my office one and my own id.
>
>
>
> The error message in Firefox is still
>
> RangeError:  arguments array passed to Function.prototype.apply is too
> large
>
>
>
> I was testing it on my P5S2Br molecule, but got the same error message on
> others of my website molecules,
>
> if they required the use of Rule 4b.
>
>
>
> Is it failing because these are older implementations of HTML5 and it is
> trying to use a newer feature?
>
>
>
> I suppose there might be a common university web cache which all of our
> machines are going through,
>
> and over which I have no control, but I do not know that.
>
>
>
>    Bruce
>
>
>
> *From:* Robert Hanson [mailto:hans...@stolaf.edu]
> *Sent:* 10 July 2017 23:23
> *To:* jmol-users@lists.sourceforge.net
> *Subject:* [Jmol-users] Jmol 14.20.2 - replaces 14.20.1
>
>
>
> Jmol.___JmolVersion="14.20.2" // 2017.07.09
>
> bug fix: CIPChirality adding presort for Rules 4a and 4c (test12.mol; 828
> lines)
> bug fix: write SDF and write MOL do not set atom parity field
> bug fix: JavaScript JSmol broken for chirality due to bug in
> Clazz.clone(obj)
>
> bug fix: Upgrade of natural abundance average masses (no significant
> changes here):
>
>   // all numbers except radionuclides from:
>   // Atomic weights of the elements 2013 (IUPAC Technical Report)
>   // Juris Meija, Tyler B. Coplen, Michael Berglund, Willi A. Brand, Paul
> De Bièvre,
>   // Manfred Gröning, Norman E. Holden, Johanna Irrgeher, Robert D. Loss,
> Thomas Walczyk,
>   // Thomas Prohaska  Published Online: 2016-02-24 | DOI:
> https://doi.org/10.1515/pac-2015-0305
>   // https://www.degruyter.com/view/j/pac.2016.88.issue-3/
> pac-2015-0305/pac-2015-0305.xml
>
> /* 1 H */ 1.008f, 4.002f,
> /* 2 Li */ 6.9675f, 9.012f,  10.8135f, 12.0106f, 14.006f, 15.999f,
> 18.998f, 20.1797f,
> /* 3 Na */ 22.989f, 24.307f, 26.981f, 28.084f, 30.973f, 32.059f,
> 35.4515f, 39.948f,
> /* 4 K */ 39.0983f, 40.078f, 44.955f, 47.867f, 50.9415f, 51.9961f,
> 54.938f, 55.845f, 58.933f, 58.6934f, 63.546f, 65.38f, 69.723f, 72.63f,
> 74.921f, 78.971f, 79.904f, 83.798f,
> /* 5 Rb */ 85.4678f, 87.62f, 88.905f, 91.224f, 92.906f, 95.95f,
> 98.91f, 101.07f, 102.905f, 106.42f, 107.8682f, 112.414f, 114.818f, 118.71f,
> 121.76f, 127.6f, 126.904f, 131.293f,
> /* 6 Cs, Ba, actinides */132.905f, 137.327f, 138.905f, 140.116f,
> 140.907f, 144.242f, 144.9f,  150.36f, 151.964f, 157.25f, 158.925f, 162.5f,
> 164.93f, 167.259f, 168.934f, 173.054f, 174.9668f,
> /* 6 Hf */  178.49f,180.947f,183.84f,186.207f,190.23f,192.217f,195.
> 084f,196.966f,200.592f,204.3835f,207.2f,208.98f,210f, 210f, 222f,
> /* 7 Fr, Ra, lanthanides */ 223f, 226.03f, 227.03f, 232.0377f,
> 231.035f, 238.028f, 237.05f, 239.1f, 243.1f, 247.1f, 247.1f, 252.1f,
> 252.1f, 257.1f, 256.1f, 259.1f, 260.1f,
> /* 7 Rf - Mt */ 261f, 262f, 263f, 262f, 265f, 268f
>
>
>
>
> --
>
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> 
> --
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>


-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users


Re: [Jmol-users] Jmol 14.20.2 - replaces 14.20.1

2017-07-12 Thread Bruce Tattershall
Thanks Bob

I haven’t been able to break the JSMol chirality finder using Chrome in a 
Windows 7 PC nor using
Firefox 52.2 in Linux, in this version, in contrast to version 14.20.1, so we 
are another step
forward.

However it still fails as before in IE11 or in Firefox 22 in a PC.
To avoid any possibility of cache trouble, I used two different other user ids 
and a public PC rather than
my office one and my own id.

The error message in Firefox is still
RangeError:  arguments array passed to Function.prototype.apply is too large

I was testing it on my P5S2Br molecule, but got the same error message on 
others of my website molecules,
if they required the use of Rule 4b.

Is it failing because these are older implementations of HTML5 and it is trying 
to use a newer feature?

I suppose there might be a common university web cache which all of our 
machines are going through,
and over which I have no control, but I do not know that.

   Bruce

From: Robert Hanson [mailto:hans...@stolaf.edu]
Sent: 10 July 2017 23:23
To: jmol-users@lists.sourceforge.net
Subject: [Jmol-users] Jmol 14.20.2 - replaces 14.20.1

Jmol.___JmolVersion="14.20.2" // 2017.07.09

bug fix: CIPChirality adding presort for Rules 4a and 4c (test12.mol; 828 lines)
bug fix: write SDF and write MOL do not set atom parity field
bug fix: JavaScript JSmol broken for chirality due to bug in Clazz.clone(obj)

bug fix: Upgrade of natural abundance average masses (no significant changes 
here):

  // all numbers except radionuclides from:
  // Atomic weights of the elements 2013 (IUPAC Technical Report)
  // Juris Meija, Tyler B. Coplen, Michael Berglund, Willi A. Brand, Paul De 
Bièvre,
  // Manfred Gröning, Norman E. Holden, Johanna Irrgeher, Robert D. Loss, 
Thomas Walczyk,
  // Thomas Prohaska  Published Online: 2016-02-24 | DOI: 
https://doi.org/10.1515/pac-2015-0305
  // 
https://www.degruyter.com/view/j/pac.2016.88.issue-3/pac-2015-0305/pac-2015-0305.xml

/* 1 H */ 1.008f, 4.002f,
/* 2 Li */ 6.9675f, 9.012f,  10.8135f, 12.0106f, 14.006f, 15.999f, 
18.998f, 20.1797f,
/* 3 Na */ 22.989f, 24.307f, 26.981f, 28.084f, 30.973f, 32.059f, 
35.4515f, 39.948f,
/* 4 K */ 39.0983f, 40.078f, 44.955f, 47.867f, 50.9415f, 51.9961f, 54.938f, 
55.845f, 58.933f, 58.6934f, 63.546f, 65.38f, 69.723f, 72.63f, 74.921f, 78.971f, 
79.904f, 83.798f,
/* 5 Rb */ 85.4678f, 87.62f, 88.905f, 91.224f, 92.906f, 95.95f, 98.91f, 
101.07f, 102.905f, 106.42f, 107.8682f, 112.414f, 114.818f, 118.71f, 121.76f, 
127.6f, 126.904f, 131.293f,
/* 6 Cs, Ba, actinides */132.905f, 137.327f, 138.905f, 140.116f, 140.907f, 
144.242f, 144.9f,  150.36f, 151.964f, 157.25f, 158.925f, 162.5f, 164.93f, 
167.259f, 168.934f, 173.054f, 174.9668f,
/* 6 Hf */  
178.49f,180.947f,183.84f,186.207f,190.23f,192.217f,195.084f,196.966f,200.592f,204.3835f,207.2f,208.98f,210f,
 210f, 222f,
/* 7 Fr, Ra, lanthanides */ 223f, 226.03f, 227.03f, 232.0377f, 231.035f, 
238.028f, 237.05f, 239.1f, 243.1f, 247.1f, 247.1f, 252.1f, 252.1f, 257.1f, 
256.1f, 259.1f, 260.1f,
/* 7 Rf - Mt */ 261f, 262f, 263f, 262f, 265f, 268f




--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users


[Jmol-users] Jmol 14.20.2 - replaces 14.20.1

2017-07-10 Thread Robert Hanson
Jmol.___JmolVersion="14.20.2" // 2017.07.09

bug fix: CIPChirality adding presort for Rules 4a and 4c (test12.mol; 828
lines)
bug fix: write SDF and write MOL do not set atom parity field
bug fix: JavaScript JSmol broken for chirality due to bug in
Clazz.clone(obj)

bug fix: Upgrade of natural abundance average masses (no significant
changes here):

  // all numbers except radionuclides from:
  // Atomic weights of the elements 2013 (IUPAC Technical Report)
  // Juris Meija, Tyler B. Coplen, Michael Berglund, Willi A. Brand, Paul
De Bièvre,
  // Manfred Gröning, Norman E. Holden, Johanna Irrgeher, Robert D. Loss,
Thomas Walczyk,
  // Thomas Prohaska  Published Online: 2016-02-24 | DOI:
https://doi.org/10.1515/pac-2015-0305
  //
https://www.degruyter.com/view/j/pac.2016.88.issue-3/pac-2015-0305/pac-2015-0305.xml

/* 1 H */ 1.008f, 4.002f,
/* 2 Li */ 6.9675f, 9.012f,  10.8135f, 12.0106f, 14.006f, 15.999f,
18.998f, 20.1797f,
/* 3 Na */ 22.989f, 24.307f, 26.981f, 28.084f, 30.973f, 32.059f,
35.4515f, 39.948f,
/* 4 K */ 39.0983f, 40.078f, 44.955f, 47.867f, 50.9415f, 51.9961f,
54.938f, 55.845f, 58.933f, 58.6934f, 63.546f, 65.38f, 69.723f, 72.63f,
74.921f, 78.971f, 79.904f, 83.798f,
/* 5 Rb */ 85.4678f, 87.62f, 88.905f, 91.224f, 92.906f, 95.95f, 98.91f,
101.07f, 102.905f, 106.42f, 107.8682f, 112.414f, 114.818f, 118.71f,
121.76f, 127.6f, 126.904f, 131.293f,
/* 6 Cs, Ba, actinides */132.905f, 137.327f, 138.905f, 140.116f,
140.907f, 144.242f, 144.9f,  150.36f, 151.964f, 157.25f, 158.925f, 162.5f,
164.93f, 167.259f, 168.934f, 173.054f, 174.9668f,
/* 6 Hf */
178.49f,180.947f,183.84f,186.207f,190.23f,192.217f,195.084f,196.966f,200.592f,204.3835f,207.2f,208.98f,210f,
210f, 222f,
/* 7 Fr, Ra, lanthanides */ 223f, 226.03f, 227.03f, 232.0377f,
231.035f, 238.028f, 237.05f, 239.1f, 243.1f, 247.1f, 247.1f, 252.1f,
252.1f, 257.1f, 256.1f, 259.1f, 260.1f,
/* 7 Rf - Mt */ 261f, 262f, 263f, 262f, 265f, 268f




-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users