Re: [Jmol-users] PHP server
Finally am I wrong? Can scripts be done without making use of the PHP code? That php piece will be called if you request a binary format file (gz, zip, pse, etc.) from Safari, Chrome, or MSIE. Those browsers can't transfer that sort of file directly; they need a server-side piece. But they will have to have that ON YOUR SERVER. In addition, that piece processes image-creation requests and turns around binary data such as JPG and ZIP files created by the JSmol on the page and simply returns it. That second part of the service could be anywhere, including chemapps. I have every reason to believe chemapps.stolaf.edu will be around for quite some time. So that should not be a problem. What is the call to that server look like? What's the URL? Bob I am having a great time with JSmol and am recruiting others to make additional useful pages. great! Thanks for your help! Chuck Gasser == Charles S. Gasser Professor Dept. of Molecular and Cellular Biology University of California, Davis 1 Shields Ave. Davis, CA 95616 104 Briggs Hall 530 752-1013 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] PHP server
I am a naïve user who takes the sample pages and modifies them to my purposes with only minimal understanding of what is actually involved under the hood. While note necessary for pages where I just show some structures (e. g. this page I made: http://www.mcb.ucdavis.edu/courses/jsmol/aapages/Aliphatic.html), all pages that I construct that include scripts that alter structures only work if I include a call to jmol.php. Unfortunately, I do not have a PHP server I can use at my location. I saw that pages at multiple locations made use of http://chemapps.stolaf.edu/jmol/jsmol/jsmol.php;. So I copied this and have been using this in my pages that have selectable scripts (e. g. http://www.mcb.ucdavis.edu/courses/jsmol/Nucleosomejs.htm ). I am not sure that using this site is appropriate. So first I ask Robert if it is okay for me to have my pages access this site that he setup at his institution. Second I ask about the persistence of this site as all of my pages with scripts will break if this site changes its name or evaporates. Finally am I wrong? Can scripts be done without making use of the PHP code? I am having a great time with JSmol and am recruiting others to make additional useful pages. Thanks for your help! Chuck Gasser == Charles S. Gasser Professor Dept. of Molecular and Cellular Biology University of California, Davis 1 Shields Ave. Davis, CA 95616 104 Briggs Hall 530 752-1013 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] PHP server
Dear Charles, You are welcome to create and host your pages at http://proteopedia.org We have material from several courses and also provide environment for students to do their practices and prepare their own work. Some examples at http://proteopedia.org/w/Student_Projects . Proteopedia includes a friendly scene editor that might help you in preparing your interactive pages. Pages you may want to browse are http://proteopedia.org/w/Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages , http://proteopedia.org/w/Help:Contents , http://proteopedia.org/w/Teaching_Strategies_Using_Proteopedia Please feel free to write if you have questions or need any help. Regards, Jaim __ Dr Jaime Prilusky Head Bioinformatics RD Bioinformatics and Data Management Department of Biological Services Weizmann Institute of Science 76100 Rehovot - Israel mail: jaime.prilu...@weizmann.ac.il tel: 972-8-9344959 fax: 972-8-9344113 OCA, http://oca.weizmann.ac.il (the protein structure/function database) Proteopedia, http://proteopedia.org (because life has more than 2D) On Dec 11, 2013, at 6:59 AM, Charles Gasser csgas...@ucdavis.edu wrote: I am a naïve user who takes the sample pages and modifies them to my purposes with only minimal understanding of what is actually involved under the hood. While note necessary for pages where I just show some structures (e. g. this page I made: http://www.mcb.ucdavis.edu/courses/jsmol/aapages/Aliphatic.html), all pages that I construct that include scripts that alter structures only work if I include a call to jmol.php. Unfortunately, I do not have a PHP server I can use at my location. I saw that pages at multiple locations made use of http://chemapps.stolaf.edu/jmol/jsmol/jsmol.php;. So I copied this and have been using this in my pages that have selectable scripts (e. g. http://www.mcb.ucdavis.edu/courses/jsmol/Nucleosomejs.htm ). I am not sure that using this site is appropriate. So first I ask Robert if it is okay for me to have my pages access this site that he setup at his institution. Second I ask about the persistence of this site as all of my pages with scripts will break if this site changes its name or evaporates. Finally am I wrong? Can scripts be done without making use of the PHP code? I am having a great time with JSmol and am recruiting others to make additional useful pages. Thanks for your help! Chuck Gasser == Charles S. Gasser Professor Dept. of Molecular and Cellular Biology University of California, Davis 1 Shields Ave. Davis, CA 95616 104 Briggs Hall 530 752-1013 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
