[Jmol-users] R: JSmol -- Are we done?

2012-11-27 Thread pino.stricc...@libero.it
I tried to implement JSmol inside wordpress but untill now i have no results as 
you can see in this address... 
http://pinostriccoli.altervista.org/?page_id=5173Can anybody give me an idea of 
what is happening?Maybe the implementation of JSmol in cms can be a good thing. 
While Java has no problem at all now, this seems more difficult. From what  
Henry Rzepa published on his blog i was able to implement chemdoodle 
(http://pinostriccoli.altervista.org/?page_id=4872) . Maybe we can do it with 
JSmol that is far better. But my knowledges are limited  
pino



Messaggio originale

Da: hans...@stolaf.edu

Data: 24/11/2012 19.43

A: jmol-users@lists.sourceforge.netjmol-users@lists.sourceforge.net

Ogg: [Jmol-users] JSmol -- Are we done?



I think we are close to saying that that conversion from Java to JavaScript is 
done. What am I forgetting?

http://chemapps.stolaf.edu/jmol/jsmol/test2.htm


-- all links working?
-- working on all browsers?
-- mouse actions are working?
-- all file types loading?

Is that everything? Can we say it is ready for release?

known issues:

-- no support for width/height expressed in %
-- no popup menu
-- no CONSOLE command, but Jmol.showInfo(applet,true/false) works, and you can 
enter commands either using the command input box or using  in the Search 
text box.
-- could be issues loading some less-common binary file types for surfaces in 
particular. 


That's all I can think of. 

Bob

-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr



If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900







 --
Monitor your physical, virtual and cloud infrastructure from a single
web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
Pricing starts from $795 for 25 servers or applications!
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Re: [Jmol-users] R: JSmol -- Are we done?

2012-11-27 Thread Robert Hanson
It's just that

script type=text/javascript src=/wp-content/j2s/j2sjmol.js
view-source:http://pinostriccoli.altervista.org/wp-content/j2s/j2sjmol.js/script

points to an HTML file, not that file.





On Tue, Nov 27, 2012 at 6:13 AM, pino.stricc...@libero.it 
pino.stricc...@libero.it wrote:

 I tried to implement JSmol inside wordpress but untill now i have no
 results as you can see in this address...
 http://pinostriccoli.altervista.org/?page_id=5173

 Can anybody give me an idea of what is happening?Maybe the implementation
 of JSmol in cms can be a good thing. While Java has no problem at all now,
 this seems more difficult. From what  Henry Rzepa published on his blog i
 was able to implement chemdoodle (
 http://pinostriccoli.altervista.org/?page_id=4872) . Maybe we can do it
 with JSmol that is far better. But my knowledges are limited
 pino


  Messaggio originale
 Da: hans...@stolaf.edu
 Data: 24/11/2012 19.43
 A: jmol-users@lists.sourceforge.netjmol-users@lists.sourceforge.net
 Ogg: [Jmol-users] JSmol -- Are we done?


 I think we are close to saying that that conversion from Java to
 JavaScript is done. What am I forgetting?

 http://chemapps.stolaf.edu/jmol/jsmol/test2.htm

 -- all links working?
 -- working on all browsers?
 -- mouse actions are working?
 -- all file types loading?

 Is that everything? Can we say it is ready for release?

 known issues:

 -- no support for width/height expressed in %
 -- no popup menu
 -- no CONSOLE command, but Jmol.showInfo(applet,true/false) works, and you
 can enter commands either using the command input box or using  in the
 Search text box.
 -- could be issues loading some less-common binary file types for surfaces
 in particular.

 That's all I can think of.

 Bob

 --
 Robert M. Hanson
 Larson-Anderson Professor of Chemistry
 Chair, Chemistry Department
 St. Olaf College
 Northfield, MN
 http://www.stolaf.edu/people/hansonr


 If nature does not answer first what we want,
 it is better to take what answer we get.

 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900







 --
 Monitor your physical, virtual and cloud infrastructure from a single
 web console. Get in-depth insight into apps, servers, databases, vmware,
 SAP, cloud infrastructure, etc. Download 30-day Free Trial.
 Pricing starts from $795 for 25 servers or applications!
 http://p.sf.net/sfu/zoho_dev2dev_nov
 ___
 Jmol-users mailing list
 Jmol-users@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-users




-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Monitor your physical, virtual and cloud infrastructure from a single
web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
Pricing starts from $795 for 25 servers or applications!
http://p.sf.net/sfu/zoho_dev2dev_nov___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users


Re: [Jmol-users] R: JSmol -- Are we done?

2012-11-27 Thread Robert Hanson
Oh:

h1bPage not found/b (error 404)/h1  h2The 
page
bhttp://pinostriccoli.altervista.org/wp-content/j2s/j2sjmol.js/b
was not found on this server./h2  pThis can be 
due
to:/p ulliThe page no longer exists./li





On Tue, Nov 27, 2012 at 7:32 AM, Robert Hanson hans...@stolaf.edu wrote:

 It's just that

 script type=text/javascript src=/wp-content/j2s/j2sjmol.js/script

 points to an HTML file, not that file.





 On Tue, Nov 27, 2012 at 6:13 AM, pino.stricc...@libero.it 
 pino.stricc...@libero.it wrote:

 I tried to implement JSmol inside wordpress but untill now i have no
 results as you can see in this address...
 http://pinostriccoli.altervista.org/?page_id=5173

 Can anybody give me an idea of what is happening?Maybe the implementation
 of JSmol in cms can be a good thing. While Java has no problem at all now,
 this seems more difficult. From what  Henry Rzepa published on his blog i
 was able to implement chemdoodle (
 http://pinostriccoli.altervista.org/?page_id=4872) . Maybe we can do it
 with JSmol that is far better. But my knowledges are limited
 pino


  Messaggio originale
 Da: hans...@stolaf.edu
 Data: 24/11/2012 19.43
 A: jmol-users@lists.sourceforge.netjmol-users@lists.sourceforge.net
 Ogg: [Jmol-users] JSmol -- Are we done?


 I think we are close to saying that that conversion from Java to
 JavaScript is done. What am I forgetting?

 http://chemapps.stolaf.edu/jmol/jsmol/test2.htm

 -- all links working?
 -- working on all browsers?
 -- mouse actions are working?
 -- all file types loading?

 Is that everything? Can we say it is ready for release?

 known issues:

 -- no support for width/height expressed in %
 -- no popup menu
 -- no CONSOLE command, but Jmol.showInfo(applet,true/false) works, and
 you can enter commands either using the command input box or using  in
 the Search text box.
 -- could be issues loading some less-common binary file types for
 surfaces in particular.

 That's all I can think of.

 Bob

 --
 Robert M. Hanson
 Larson-Anderson Professor of Chemistry
 Chair, Chemistry Department
 St. Olaf College
 Northfield, MN
 http://www.stolaf.edu/people/hansonr


 If nature does not answer first what we want,
 it is better to take what answer we get.

 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900







 --
 Monitor your physical, virtual and cloud infrastructure from a single
 web console. Get in-depth insight into apps, servers, databases, vmware,
 SAP, cloud infrastructure, etc. Download 30-day Free Trial.
 Pricing starts from $795 for 25 servers or applications!
 http://p.sf.net/sfu/zoho_dev2dev_nov
 ___
 Jmol-users mailing list
 Jmol-users@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-users




 --
 Robert M. Hanson
 Larson-Anderson Professor of Chemistry
 Chair, Chemistry Department
 St. Olaf College
 Northfield, MN
 http://www.stolaf.edu/people/hansonr


 If nature does not answer first what we want,
 it is better to take what answer we get.

 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900





-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Monitor your physical, virtual and cloud infrastructure from a single
web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
Pricing starts from $795 for 25 servers or applications!
http://p.sf.net/sfu/zoho_dev2dev_nov___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users


Re: [Jmol-users] R: JSmol -- Are we done?

2012-11-27 Thread Jaime Prilusky
You must provide the full path for j2sPath in the Info block.
In you case, try

j2sPath: /wp-content/j2s,

Let me know if this helps.
Jaim

On Nov 27, 2012, at 2:13 PM, 
pino.stricc...@libero.itmailto:pino.stricc...@libero.it wrote:

I tried to implement JSmol inside wordpress but untill now i have no results as 
you can see in this address... http://pinostriccoli.altervista.org/?page_id=5173
Can anybody give me an idea of what is happening?Maybe the implementation of 
JSmol in cms can be a good thing. While Java has no problem at all now, this 
seems more difficult. From what  Henry Rzepa published on his blog i was able 
to implement chemdoodle (http://pinostriccoli.altervista.org/?page_id=4872) . 
Maybe we can do it with JSmol that is far better. But my knowledges are limited
pino

Messaggio originale
Da: hans...@stolaf.edumailto:hans...@stolaf.edu
Data: 24/11/2012 19.43
A: 
jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.netjmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net
Ogg: [Jmol-users] JSmol -- Are we done?

I think we are close to saying that that conversion from Java to JavaScript is 
done. What am I forgetting?

http://chemapps.stolaf.edu/jmol/jsmol/test2.htm

-- all links working?
-- working on all browsers?
-- mouse actions are working?
-- all file types loading?

Is that everything? Can we say it is ready for release?

known issues:

-- no support for width/height expressed in %
-- no popup menu
-- no CONSOLE command, but Jmol.showInfo(applet,true/false) works, and you can 
enter commands either using the command input box or using  in the Search 
text box.
-- could be issues loading some less-common binary file types for surfaces in 
particular.

That's all I can think of.

Bob

--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900






--
Monitor your physical, virtual and cloud infrastructure from a single
web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
Pricing starts from $795 for 25 servers or applications!
http://p.sf.net/sfu/zoho_dev2dev_nov___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users

__
 Dr Jaime Prilusky
 Head Bioinformatics
 RD Bioinformatics and Data Management
 Department of Biological Services
 Weizmann Institute of Science
 76100 Rehovot - Israel

 mail: jaime.prilu...@weizmann.ac.ilmailto:jaime.prilu...@weizmann.ac.il
 tel: 972-8-9344959
 fax: 972-8-9344113
 OCA, http://oca.weizmann.ac.il (the protein structure/function database)
 Proteopedia, http://proteopedia.org (because life has more than 2D)
 



--
Monitor your physical, virtual and cloud infrastructure from a single
web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
Pricing starts from $795 for 25 servers or applications!
http://p.sf.net/sfu/zoho_dev2dev_nov___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
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