Re: [Jmol-users] Re: color schemes
According to Miguel: Q: Should the color scale be red - blue ? Since we are talking about 'temperature' I guess that makes sense. But it seems strange (unfortunate) to me that both charge temp are using red/blue. You're correct. In Rasmol, the ONLY difference between the charge and temperature colour schemes is that increasing temperature values proceed from blue to red, whereas increasing charge values go from red to blue. It would be nice to be able to set the color scheme gradient, i.e: red-white-blue gradient, where blue is the highest value, going through white (Rasmol goes through green).. Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] RD Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972-8-9344113 76100 Rehovot - Israel | tel: 972-8-9344959 info URL http://bip.weizmann.ac.il/staff/jaime_prilusky.html OCA is at http://bip.weizmann.ac.il/oca/ --- This SF.Net email is sponsored by OSTG. Have you noticed the changes on Linux.com, ITManagersJournal and NewsForge in the past few weeks? Now, one more big change to announce. We are now OSTG- Open Source Technology Group. Come see the changes on the new OSTG site. www.ostg.com ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Re: color schemes
On [2004-Aug-08] Miguel [EMAIL PROTECTED] wrote: Jaime one of his colleagues replied off-list suggesting that we have both relative and absolute coloring. Rather than make this a 'setting' and adding more hidden state to the system, it seems to me that we would be better off making a new script command. That'd be fine. By default, RasMol uses relative values. Q: Is there another name that we can use? color atoms absoluteTemperature color atoms byTempFactorRelative color atoms byTempFactorValue ?? Q: Should the color scale be red - blue ? Since we are talking about 'temperature' I guess that makes sense. But it seems strange (unfortunate) to me that both charge temp are using red/blue. Red is commmonly taken to mean warning -- these atoms are the most mobile (hottest) and their positions may be unreliable whereas as blue, denotes cold and therefor not very mobile. Rich --- This SF.Net email is sponsored by OSTG. Have you noticed the changes on Linux.com, ITManagersJournal and NewsForge in the past few weeks? Now, one more big change to announce. We are now OSTG- Open Source Technology Group. Come see the changes on the new OSTG site. www.ostg.com ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Re: color schemes
On [2004-Aug-08] Miguel [EMAIL PROTECTED] wrote: Q: Do you think that the colors should be assigned based upon fixed temperature values? Or upon relative values within the molecule? Could we have both? I do most of my work at low temperature (100K) but sometimes I have to use room temp., so having fixed ranges doesn't tell me much about low temp. structures if the ranges are suitable for room temp. structures. Rich, Jaime one of his colleagues replied off-list suggesting that we have both relative and absolute coloring. Rather than make this a 'setting' and adding more hidden state to the system, it seems to me that we would be better off making a new script command. By default, RasMol uses relative values. Q: Is there another name that we can use? color atoms absoluteTemperature Q: Should the color scale be red - blue ? Since we are talking about 'temperature' I guess that makes sense. But it seems strange (unfortunate) to me that both charge temp are using red/blue. Miguel Rich --- This SF.Net email is sponsored by OSTG. Have you noticed the changes on Linux.com, ITManagersJournal and NewsForge in the past few weeks? Now, one more big change to announce. We are now OSTG- Open Source Technology Group. Come see the changes on the new OSTG site. www.ostg.com ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users -- Miguel Howard [EMAIL PROTECTED] c/Peña Primera 11-13 esc dcha 6B 37002 Salamanca España Spain -- telefono casa 923 27 10 82 movil 650 52 54 58 -- To call from the US dial9:00 am Pacific US = home 011 34 923 27 10 82 12:00 noon Eastern US = cell 011 34 650 52 54 586:00 pm Spain -- --- This SF.Net email is sponsored by OSTG. Have you noticed the changes on Linux.com, ITManagersJournal and NewsForge in the past few weeks? Now, one more big change to announce. We are now OSTG- Open Source Technology Group. Come see the changes on the new OSTG site. www.ostg.com ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
