Re: [Jmol-users] Sync command problem
Dear Karl,
Take a look to the source of http://proteopedia.org/w/Forms_of_DNA
I would say that you are missing jmolSetTarget('A');
Jaim
On Jun 12, 2012, at 6:31 PM, Oberholser, Karl wrote:
Bob,
What is wrong with how I implemented your suggested code for the sync
command? My implementation is at
http://www.proteopedia.org/wiki/index.php/Sandbox_60.
Karl
From: Oberholser, Karl [oberh...@messiah.edu]
Sent: Tuesday, May 15, 2012 11:14 AM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob,
Your suggested coding did not solve the problem, so Kirsten removed it from
her page when her work was due for grading. I had asked her to put it back
so that we could work with it, but in the push to finish the semester and
then to prepare for her wedding in June she has not gotten it done. I have
put it on http://www.proteopedia.org/wiki/index.php/Sandbox_60 so that you
can view how your code was implemented.
Karl
From: Lamar Barnett [lamarbarn...@barnett-it.com]
Sent: Monday, April 23, 2012 4:14 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Under Linux, Chrome, and Sun Java all the models load but the second
page the viewport/rotation is buggy.
On Mon, Apr 23, 2012 at 9:54 AM, Oberholser, Karl oberh...@messiah.edu
wrote:
I should have added that I am running Windows XP
From: Robert Hanson [hans...@stolaf.edu]
Sent: Sunday, April 22, 2012 10:34 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl oberh...@messiah.edu
wrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
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https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution
Re: [Jmol-users] Sync command problem
Jaim,
Bob's suggestion to re-center each structure after loading solved most of the
problem. I had tried that earlier, but apparently did not have the script
correct. I will take a look at your suggestion.
Karl
From: Jaime Prilusky [jaime.prilu...@weizmann.ac.il]
Sent: Tuesday, June 12, 2012 2:19 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Dear Karl,
Take a look to the source of http://proteopedia.org/w/Forms_of_DNA
I would say that you are missing jmolSetTarget('A');
Jaim
On Jun 12, 2012, at 6:31 PM, Oberholser, Karl wrote:
Bob,
What is wrong with how I implemented your suggested code for the sync
command? My implementation is at
http://www.proteopedia.org/wiki/index.php/Sandbox_60.
Karl
From: Oberholser, Karl [oberh...@messiah.edu]
Sent: Tuesday, May 15, 2012 11:14 AM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob,
Your suggested coding did not solve the problem, so Kirsten removed it from
her page when her work was due for grading. I had asked her to put it back
so that we could work with it, but in the push to finish the semester and
then to prepare for her wedding in June she has not gotten it done. I have
put it on http://www.proteopedia.org/wiki/index.php/Sandbox_60 so that you
can view how your code was implemented.
Karl
From: Lamar Barnett [lamarbarn...@barnett-it.com]
Sent: Monday, April 23, 2012 4:14 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Under Linux, Chrome, and Sun Java all the models load but the second
page the viewport/rotation is buggy.
On Mon, Apr 23, 2012 at 9:54 AM, Oberholser, Karl oberh...@messiah.edu
wrote:
I should have added that I am running Windows XP
From: Robert Hanson [hans...@stolaf.edu]
Sent: Sunday, April 22, 2012 10:34 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl oberh...@messiah.edu
wrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
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https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
Re: [Jmol-users] Sync command problem
Bob,
Your suggested coding did not solve the problem, so Kirsten removed it from her
page when her work was due for grading. I had asked her to put it back so that
we could work with it, but in the push to finish the semester and then to
prepare for her wedding in June she has not gotten it done. I have put it on
http://www.proteopedia.org/wiki/index.php/Sandbox_60 so that you can view how
your code was implemented.
Karl
From: Lamar Barnett [lamarbarn...@barnett-it.com]
Sent: Monday, April 23, 2012 4:14 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Under Linux, Chrome, and Sun Java all the models load but the second
page the viewport/rotation is buggy.
On Mon, Apr 23, 2012 at 9:54 AM, Oberholser, Karl oberh...@messiah.edu wrote:
I should have added that I am running Windows XP
From: Robert Hanson [hans...@stolaf.edu]
Sent: Sunday, April 22, 2012 10:34 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl oberh...@messiah.edu
wrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
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Jmol-users@lists.sourceforge.net
https
Re: [Jmol-users] Sync command problem
I should have added that I am running Windows XP
From: Robert Hanson [hans...@stolaf.edu]
Sent: Sunday, April 22, 2012 10:34 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl
oberh...@messiah.edumailto:oberh...@messiah.edu wrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edumailto:ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net;
jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.edumailto:ema...@microbio.umass.eduema...@microbio.umass.edumailto:ema...@microbio.umass.edu
wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107tel:507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
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--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Re: [Jmol-users] Sync command problem
Under Linux, Chrome, and Sun Java all the models load but the second
page the viewport/rotation is buggy.
On Mon, Apr 23, 2012 at 9:54 AM, Oberholser, Karl oberh...@messiah.edu wrote:
I should have added that I am running Windows XP
From: Robert Hanson [hans...@stolaf.edu]
Sent: Sunday, April 22, 2012 10:34 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl oberh...@messiah.edu
wrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone
[Jmol-users] Sync command problem
At 4/21/12, Oberholser, Karl wrote: Eric, There is a Messiah biochemistry student that is have a problem with the sync command. She copied the code from the DNA forms page. I have exhausted my ideas to try. Could you take a look at it? The page is Interferons. This page is a spin off of a page on MS. Karl Dear Karl (and everyone): Indeed, sync is working great on this page (you have to check the checkbox below the 3 Jmols): http://www.proteopedia.org/wiki/index.php/Forms_of_DNA Yet when sync is turned on here, http://www.proteopedia.org/wiki/index.php/Interferons and one of the 3 Jmols is rotated, the other two molecules jump off center (and often out of the viewport) -- even though initially all 3 are centered around their own centers of mass. I can't see any errors in the code in the Interferons page -- looks identical to that in the DNA page. I'm stumped. Can anyone help? Eric -- For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Sync command problem
worse than that, I'm having a heck of a time loading that page and getting
all the applets to load. I'll have to think about what is going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set syncscript
false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz ema...@microbio.umass.eduwrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2___
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Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Sync command problem
It's terrible in Firefox/Windows 7. Almost always only two of the three
appeared, and Java choked on the third. (Fourth if you count the big one on
that page)
On Sun, Apr 22, 2012 at 3:38 PM, Eric Martz ema...@microbio.umass.eduwrote:
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNA
http://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferons
http://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Sync command problem
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNAhttp://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferonshttp://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonrhttp://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Sync command problem
that's good to hear. Wonder what's wrong with my installation.
On Sun, Apr 22, 2012 at 9:12 PM, Oberholser, Karl oberh...@messiah.eduwrote:
Eric Bob,
All four load for me in FireFox/Windows.
Karl
From: Eric Martz [ema...@microbio.umass.edu]
Sent: Sunday, April 22, 2012 4:38 PM
To: jmol-users@lists.sourceforge.net; jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Sync command problem
Bob, I have no trouble with all 3 Jmols and their molecules loading
promptly in Safari on OS X (OS 10.5.8). Eric
At 4/22/12, Robert Hanson wrote:
worse than that, I'm having a heck of a time loading that page and
getting all the applets to load. I'll have to think about what is
going on there.
But here's the command for that checkbox:
jmolSetTarget('Z')
jmolScript('sync jmolAppletA,jmolAppletB;sync on;sync * set
syncscript false;set syncmouse true;select *;translateSelected
@{-{visible}.xyz};center visible;zoom 0 ')
Bob
On Sun, Apr 22, 2012 at 1:59 PM, Eric Martz
mailto:ema...@microbio.umass.eduema...@microbio.umass.edu wrote:
At 4/21/12, Oberholser, Karl wrote:
Eric,
There is a Messiah biochemistry student that is have a problem with
the sync command. She copied the code from the DNA forms page. I
have exhausted my ideas to try. Could you take a look at it? The
page is Interferons. This page is a spin off of a page on MS.
Karl
Dear Karl (and everyone):
Indeed, sync is working great on this page (you have to check the
checkbox below the 3 Jmols):
http://www.proteopedia.org/wiki/index.php/Forms_of_DNA
http://www.proteopedia.org/wiki/index.php/Forms_of_DNA
Yet when sync is turned on here,
http://www.proteopedia.org/wiki/index.php/Interferons
http://www.proteopedia.org/wiki/index.php/Interferons
and one of the 3 Jmols is rotated, the other two molecules jump off
center (and often out of the viewport) -- even though initially all 3
are centered around their own centers of mass.
I can't see any errors in the code in the Interferons page -- looks
identical to that in the DNA page. I'm stumped.
Can anyone help?
Eric
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
mailto:Jmol-users@lists.sourceforge.netJmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
