Re: [Jmol-users] jvxlInvalidatedVertexData on show isosurface for 14.1.3

2014-01-03 Thread Robert Hanson
I am not seeing any problem loading that string. If the invalidatedVertex
info is there, it's probably necessary.


On Thu, Jan 2, 2014 at 1:46 AM, Jaime Prilusky 
jaime.prilu...@weizmann.ac.il wrote:

 The line containing jvxlInvalidatedVertexData still appears on Jmol 14.1.3

 An email from June 2012 reports this as a bug to be fixed, but the problem
 persists on several Jmol versions after 13.0.1

 ‘jvxlInvalidatedVertexData' appears as an additional line when requesting
 ‘show isosurface’ on recent Jmol versions. It was not present on Jmol 13.0.1

 The sequence of commands below, on Jmol 13.0.1, generates a valid JVXL
 string. On recent versions it also contains the jvxlInvalidatedVertexData
 additional data, which seems to affect subsequent loading of the JVXL
 string.

 load 3rec;
 isosurface solvent;
 show isosurface;

 Jaim

 __
 Dr Jaime Prilusky
 Head Bioinformatics
 RD Bioinformatics and Data Management
 Department of Biological Services
 Weizmann Institute of Science
 76100 Rehovot - Israel

 mail: jaime.prilu...@weizmann.ac.il
 tel: 972-8-9344959
 fax: 972-8-9344113
 OCA, http://oca.weizmann.ac.il (the protein structure/function database)
 Proteopedia, http://proteopedia.org (because life has more than 2D)
 



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-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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[Jmol-users] jvxlInvalidatedVertexData on show isosurface for 14.1.3

2014-01-01 Thread Jaime Prilusky
The line containing jvxlInvalidatedVertexData still appears on Jmol 14.1.3

An email from June 2012 reports this as a bug to be fixed, but the problem 
persists on several Jmol versions after 13.0.1

‘jvxlInvalidatedVertexData' appears as an additional line when requesting ‘show 
isosurface’ on recent Jmol versions. It was not present on Jmol 13.0.1

The sequence of commands below, on Jmol 13.0.1, generates a valid JVXL string. 
On recent versions it also contains the jvxlInvalidatedVertexData additional 
data, which seems to affect subsequent loading of the JVXL string.

load 3rec;
isosurface solvent;
show isosurface;

Jaim

__
Dr Jaime Prilusky
Head Bioinformatics 
RD Bioinformatics and Data Management
Department of Biological Services
Weizmann Institute of Science
76100 Rehovot - Israel

mail: jaime.prilu...@weizmann.ac.il
tel: 972-8-9344959
fax: 972-8-9344113
OCA, http://oca.weizmann.ac.il (the protein structure/function database)
Proteopedia, http://proteopedia.org (because life has more than 2D)



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Rapidly troubleshoot problems before they affect your business. Most IT 
organizations don't have a clear picture of how application performance 
affects their revenue. With AppDynamics, you get 100% visibility into your 
Java,.NET,  PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk
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