Re: [Jmol-users] show site_list
Maybe you are just loading files (older ones?) that do not have site
information. It works with
$load =1blu
$ show variables
@site_1 ({127:132 157:164 265:270 287:292 342:347 357:362});
@site_ac1 ({53:66 75:88 96:101 208:219 386:398 414:427});
@site_ac2 ({127:132 157:164 265:270 287:292 342:347 357:362});
site_ac1 = [[CYS]8:A, [ILE]9:A, [CYS]11:A, [ASP]12:A, [CYS]14:A,
[TYR]30:A, [CYS]53:A, [PRO]54:A, [CYS]57:A, [ILE]58:A];
site_ac2 = [[CYS]18:A, [ILE]23:A, [CYS]37:A, [CYS]40:A,
[SER]47:A, [CYS]49:A];
site_list = [site_AC1, site_AC2];
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Re: [Jmol-users] show site_list
According to Robert Hanson hans...@stolaf.edu: It works with $load =1blu $ show variables Bob, You are correct, and indeed it works as described. Just found that 'initialize' is the reason for the missing variables since it clears all global variables. This sequence of commands $ load =1blu $ initialize $ show variables returns # --no global user variables defined--; Thank you again, Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| RD Bioinformatics and Data Management | Department of Biological Services | Weizmann Institute of Science | fax: 972-8-9344113 76100 Rehovot - Israel | tel: 972-8-9344959 OCA, http://oca.weizmann.ac.il (the protein structure/function database) Proteopedia, http://proteopedia.org (because life has more than 2D) -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] show site_list
Hi Bob, show site_list used to return a list of the functional sites defined in the PDB file. As of 11.8.9 I get site_list = not defined as a response. (As a reference, here is the email where you introduced this functionality: http://www.mail-archive.com/jmol-users@lists.sourceforge.net/msg09352.html ) Eran P.S. Site_list is not mentioned in the Jmol online documentation, but it is a very useful feature to know about. -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
