make doc, problem with bibtex

2014-11-01 Thread Federico Bruni

'make doc' is returning the error below, can you help me?

make[2]: Entering directory '/home/fede/lilypond-git/Documentation'
BSTINPUTS=./essay /home/fede/lilypond-git/scripts/build/out/bib2texi \
-s /home/fede/lilypond-git/Documentation/lily-bib \
-o ./out-www/colorado.itexi \
-q \
./essay/colorado.bib

bibtex: Not writing to /home/fede/.cache/tmpzYBXQHbib2texi.blg 
(openout_any = p).

I couldn't open file name `/home/fede/.cache/tmpzYBXQHbib2texi.blg'
Bibtex exited with nonzero exit status!GNUmakefile:118: recipe for 
target 'out-www/colorado.itexi' failed

make[2]: *** [out-www/colorado.itexi] Error 1
make[2]: Leaving directory '/home/fede/lilypond-git/Documentation'
/home/fede/lilypond-git/stepmake/stepmake/generic-targets.make:166: 
recipe for target 'WWW-1' failed

make[1]: *** [WWW-1] Error 2
make[1]: Leaving directory '/home/fede/lilypond-git'
/home/fede/lilypond-git/stepmake/stepmake/generic-targets.make:182: 
recipe for target 'doc-stage-1' failed

make: *** [doc-stage-1] Error 2

fede@laptop:~/lilypond-git$ ls ../.cache/tmpzYBXQHbib2texi
tmpzYBXQHbib2texi tmpzYBXQHbib2texi.aux

.blg file is not there.


$ apt-cache policy texlive-bibtex-extra | grep Installed
 Installed: 2014.20141024-1

Probably not related, but some days ago I changed default TMPDIR (/tmp) 
to save some space on / partition:


$ echo $TMPDIR
/home/fede/.cache



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Re: make doc, problem with bibtex

2014-11-01 Thread David Kastrup
Federico Bruni fedel...@gmail.com writes:

 'make doc' is returning the error below, can you help me?

 make[2]: Entering directory '/home/fede/lilypond-git/Documentation'
 BSTINPUTS=./essay /home/fede/lilypond-git/scripts/build/out/bib2texi \
 -s /home/fede/lilypond-git/Documentation/lily-bib \
 -o ./out-www/colorado.itexi \
 -q \
 ./essay/colorado.bib

 bibtex: Not writing to /home/fede/.cache/tmpzYBXQHbib2texi.blg
 (openout_any = p).

  9. TeX can write output files, via the '\openout' primitive; this
 opens a security hole vulnerable to Trojan horse attack: an
 unwitting user could run a TeX program that overwrites, say,
 '~/.rhosts'.  Analogous security holes exist for many other
 programs.  To alleviate this, there is a configuration variable
 'openout_any', which selects one of three levels of security.  When
 it is set to 'a' (for any), no restrictions are imposed.  When it
 is set to 'r' (for restricted), filenames beginning with '.' are
 disallowed (except '.tex' because LaTeX needs it).  When it is set
 to 'p' (for paranoid) additional restrictions are imposed: an
 absolute filename must refer to a file in (a subdirectory) of
 'TEXMFOUTPUT', and any attempt to go up a directory level is
 forbidden (that is, paths may not contain a '..' component).  The
 paranoid setting is the default.  (For backwards compatibility, 'y'
 and '1' are synonyms of 'a', while 'n' and '0' are synonyms for
 'r'.)  The function 'kpathsea_out_name_ok', with a filename as
 second argument, returns 'true' if that filename is acceptable to
 be opend for output or 'false' otherwise.

 Probably not related, but some days ago I changed default TMPDIR
 (/tmp) to save some space on / partition:

 $ echo $TMPDIR
 /home/fede/.cache

It looks to me like .cache starts with a dot...

-- 
David Kastrup

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Re: make doc, problem with bibtex

2014-11-01 Thread Federico Bruni
Il giorno sab 1 nov 2014 alle 12:18, David Kastrup d...@gnu.org ha 
scritto:

 Probably not related, but some days ago I changed default TMPDIR
 (/tmp) to save some space on / partition:

 $ echo $TMPDIR
 /home/fede/.cache


It looks to me like .cache starts with a dot...


Ok, the easiest fix was changing TMPDIR to ~/tmp
Thanks
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Re: make doc problem

2012-01-27 Thread David Kastrup
Reinhold Kainhofer reinh...@kainhofer.com writes:

 On 2012-01-27 00:00, Julien Rioux wrote:
 On 26/01/2012 11:13 AM, Reinhold Kainhofer wrote:
 On 22/01/2012 20:58, Julien Rioux wrote:
 Thanks, you're quite right CPU is not the limiting factor for the
 build. Disk access and usage of swap when compiling
 input/regression/collated-files slows down the build to a crawl for me.

 The problem here is that lilypond builds up memory from 400MB to ~1GB
 without releasing...
 Most of these allocations don't seem to be memory leaks, but rather due
 to guile.

 Cheers,
 Reinhold


 Is it a bug? We're talking about lilypond running with the
 -dread-input-files flag here. Once a snippet has been processed and
 lilypond moves on to the next one, there is no reason to hold onto
 the memory used by the previous snippet, right?


 Please check the -devel mailing list (e.g. thread Memleaks or not
 last August/September), where I already observed this. I fully agree
 that after one file is processed, lilypond should reset to its initial
 state and not need more memory than before.

 I have no idea why the memory is going up like it does. To me it
 doesn't look like a classical memleak, but rather somthing with the
 Guile garbage collection...

As far as I can see, every music event tends to contain an origin of
type Input, and every Input keeps a SourceFile alive, and every
SourceFile keeps a string port to the whole file.

Any object that does not make it into garbage collection will keep the
whole pipe busy.  But let's assume this gets collected nicely.  In that
case, we have the problem that the source files are allocated as _one_
chunk each.  If the memory allocator does not have a contiguous piece of
memory of that size available, it will have to allocate a new one.

And _if_ the memory allocator has a contiguous piece of memory of that
size available and somebody asks for small pieces of memory, then it has
no business _not_ allocating from the large piece of memory.  And the
next time a large piece of memory is asked for, there is none available.

It might be worth checking whether everything is working as well as one
could hope, but there is a non-zero danger that any fixes with good
results are to a good degree depending on the operating system as well.

-- 
David Kastrup


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Re: make doc problem

2012-01-27 Thread Phil Holmes
- Original Message - 
From: Julien Rioux jri...@physics.utoronto.ca

To: lilypond-devel@gnu.org
Cc: bug-lilyp...@gnu.org
Sent: Thursday, January 26, 2012 11:00 PM
Subject: Re: make doc problem



On 26/01/2012 11:13 AM, Reinhold Kainhofer wrote:

On 22/01/2012 20:58, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the
build. Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold



Is it a bug? We're talking about lilypond running with 
the -dread-input-files flag here. Once a snippet has been processed and 
lilypond moves on to the next one, there is no reason to hold onto the 
memory used by the previous snippet, right?


--
Julien



I'm trying to look at memory usage on my Ubuntu box.  If I watch the build 
using System Monitor, I rarely see more than a gig used.  However, using 
free even my dormant machine is now showing 3 Gigs used.  Is this because 
I have around 2 Gigs marked as cache?  Is the actual in-use memory 
used-cache?


--
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Re: make doc problem

2012-01-27 Thread Phil Holmes
- Original Message - 
From: Phil Holmes m...@philholmes.net

To: lilypond-devel@gnu.org; Julien Rioux jri...@physics.utoronto.ca
Cc: bug-lilyp...@gnu.org
Sent: Friday, January 27, 2012 1:38 PM
Subject: Re: make doc problem


- Original Message - 
From: Julien Rioux jri...@physics.utoronto.ca

To: lilypond-devel@gnu.org
Cc: bug-lilyp...@gnu.org
Sent: Thursday, January 26, 2012 11:00 PM
Subject: Re: make doc problem



On 26/01/2012 11:13 AM, Reinhold Kainhofer wrote:

On 22/01/2012 20:58, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the
build. Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold



Is it a bug? We're talking about lilypond running with 
the -dread-input-files flag here. Once a snippet has been processed and 
lilypond moves on to the next one, there is no reason to hold onto the 
memory used by the previous snippet, right?


--
Julien



I'm trying to look at memory usage on my Ubuntu box.  If I watch the build 
using System Monitor, I rarely see more than a gig used.  However, using 
free even my dormant machine is now showing 3 Gigs used.  Is this 
because I have around 2 Gigs marked as cache?  Is the actual in-use 
memory used-cache?



Here's a graph of used-cache, which fits well with my observations of system 
monitor.  My machine when lying dormant having finished make/make doc uses 
970 MiB memory.  The peak I saw during make doc was 2.4 Gig.  So make doc 
takes around 1.4 Gigs when doing its greatest processing with 8 parallel 
processors.  Is this too much for your machine, Julien?  If it's a desktop, 
4 Gigs of memory is about £30 now, which might be a simpler solution than 
messing with how make doc runs.


--
Phil Holmes

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Re: make doc problem

2012-01-26 Thread Reinhold Kainhofer
On 22/01/2012 20:58, Julien Rioux wrote:
 Thanks, you're quite right CPU is not the limiting factor for the
 build. Disk access and usage of swap when compiling
 input/regression/collated-files slows down the build to a crawl for me.

The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold

-- 
--
Reinhold Kainhofer, reinh...@kainhofer.com, http://reinhold.kainhofer.com/
 * Financial  Actuarial Math., Vienna Univ. of Technology, Austria
 * http://www.fam.tuwien.ac.at/, DVR: 0005886
 * LilyPond, Music typesetting, http://www.lilypond.org


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Re: make doc problem

2012-01-26 Thread Phil Holmes
- Original Message - 
From: Reinhold Kainhofer reinh...@kainhofer.com

To: Julien Rioux jri...@physics.utoronto.ca
Cc: lilypond-devel@gnu.org; bug-lilyp...@gnu.org
Sent: Thursday, January 26, 2012 4:13 PM
Subject: Re: make doc problem



On 22/01/2012 20:58, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the
build. Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold


It only takes that amount of memory for big builds.  I've never seen much 
over 1 Gig total memory during a make with 8 CPUs all running lilypond.


--
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Re: make doc problem

2012-01-26 Thread Julien Rioux

On 22/01/2012 2:58 PM, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the build.
Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.



Could we redistribute the regression test input files into subfolders of 
say ~50 files each, possibly sorting them into categories if it makes sense?


--
Julien

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Re: make doc problem

2012-01-26 Thread Julien Rioux

On 26/01/2012 11:13 AM, Reinhold Kainhofer wrote:

On 22/01/2012 20:58, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the
build. Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold



Is it a bug? We're talking about lilypond running with the 
-dread-input-files flag here. Once a snippet has been processed and 
lilypond moves on to the next one, there is no reason to hold onto the 
memory used by the previous snippet, right?


--
Julien

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Re: make doc problem

2012-01-26 Thread Graham Percival
On Thu, Jan 26, 2012 at 05:57:43PM -0500, Julien Rioux wrote:
 On 22/01/2012 2:58 PM, Julien Rioux wrote:
 Thanks, you're quite right CPU is not the limiting factor for the build.
 Disk access and usage of swap when compiling
 input/regression/collated-files slows down the build to a crawl for me.
 
 Could we redistribute the regression test input files into
 subfolders of say ~50 files each, possibly sorting them into
 categories if it makes sense?

Wanted to do that for ages, but that's not something to get into
now.  But this shouldn't be an issue -- don't we split it into
lists of IIRC 300 files?  We had some kind of emergency bugfix
like that.
... yeah, see make/lysdoc-rules.make

You may want to look into that; perhaps changing the division from
300 to 50 would speed up the build?

- Graham

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Re: make doc problem

2012-01-26 Thread Julien Rioux

On 26/01/2012 6:14 PM, Graham Percival wrote:

On Thu, Jan 26, 2012 at 05:57:43PM -0500, Julien Rioux wrote:

On 22/01/2012 2:58 PM, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the build.
Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


Could we redistribute the regression test input files into
subfolders of say ~50 files each, possibly sorting them into
categories if it makes sense?


Wanted to do that for ages, but that's not something to get into
now.  But this shouldn't be an issue -- don't we split it into
lists of IIRC 300 files?  We had some kind of emergency bugfix
like that.
... yeah, see make/lysdoc-rules.make

You may want to look into that; perhaps changing the division from
300 to 50 would speed up the build?

- Graham


The `echo' command-line is broken down into 300-file chunks. They all 
still end up into one collated-files.tely


Anyway, it kind of sounds like a workaround or an emergency action as 
you say. Were the memory released at each snippet then it shouldn't be 
an issue.


Cheers,
Julien

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Re: make doc problem

2012-01-26 Thread Reinhold Kainhofer

On 2012-01-27 00:00, Julien Rioux wrote:

On 26/01/2012 11:13 AM, Reinhold Kainhofer wrote:

On 22/01/2012 20:58, Julien Rioux wrote:

Thanks, you're quite right CPU is not the limiting factor for the
build. Disk access and usage of swap when compiling
input/regression/collated-files slows down the build to a crawl for me.


The problem here is that lilypond builds up memory from 400MB to ~1GB
without releasing...
Most of these allocations don't seem to be memory leaks, but rather due
to guile.

Cheers,
Reinhold



Is it a bug? We're talking about lilypond running with the 
-dread-input-files flag here. Once a snippet has been processed and 
lilypond moves on to the next one, there is no reason to hold onto the 
memory used by the previous snippet, right?




Please check the -devel mailing list (e.g. thread Memleaks or not last 
August/September), where I already observed this. I fully agree that 
after one file is processed, lilypond should reset to its initial state 
and not need more memory than before.


I have no idea why the memory is going up like it does. To me it doesn't 
look like a classical memleak, but rather somthing with the Guile 
garbage collection...


Cheers,
Reinhold

--
--
Reinhold Kainhofer, reinh...@kainhofer.com, http://reinhold.kainhofer.com/
 * Financial  Actuarial Math., Vienna Univ. of Technology, Austria
 * http://www.fam.tuwien.ac.at/, DVR: 0005886
 * LilyPond, Music typesetting, http://www.lilypond.org


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make doc problem

2012-01-22 Thread Jean-Charles Malahieude

Hi all!

Not only that I can no longer use -j on a first build (it is OK
on the next builds), which means 40' for a make doc LANGS='fr' and
about 2 hours for all languages, I now have to make doc-clean in
order to view a corrected typo. I've tried a touch masterfile.tely
before make doc but it doesn't change anything.

Does anybody else experiment this as well?

Cheers,
Jean-Charles

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Re: make doc problem

2012-01-22 Thread Phil Holmes
- Original Message - 
From: Jean-Charles Malahieude lily...@orange.fr
To: Lily Bugs bug-lilyp...@gnu.org; lilypond-devel 
lilypond-devel@gnu.org; Julien Rioux jri...@physics.utoronto.ca

Sent: Sunday, January 22, 2012 6:19 PM
Subject: make doc problem



Hi all!

Not only that I can no longer use -j on a first build (it is OK
on the next builds), which means 40' for a make doc LANGS='fr' and
about 2 hours for all languages, I now have to make doc-clean in
order to view a corrected typo. I've tried a touch masterfile.tely
before make doc but it doesn't change anything.

Does anybody else experiment this as well?

Cheers,
Jean-Charles



I've run a few with -j9 CPU_COUNT=9 this afternoon with no problems.  The 
only oddity I've noticed is that make doc make doc now seems to rebuild a 
lot of files the second run.


--
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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 1:19 PM, Jean-Charles Malahieude wrote:

Hi all!

Not only that I can no longer use -j on a first build (it is OK
on the next builds), which means 40' for a make doc LANGS='fr' and
about 2 hours for all languages, I now have to make doc-clean in
order to view a corrected typo. I've tried a touch masterfile.tely
before make doc but it doesn't change anything.

Does anybody else experiment this as well?

Cheers,
Jean-Charles


Hi Jean-Charles,

I can't run -j, I have a single core. Can you please report more 
precisely why you can no longer use it?


The second issue I have not seen. If I correct a typo in a file in 
Documentation then make doc will rebuild it. OK I should check 
Documentation/fr right now...


Regards,
Julien

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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 1:30 PM, Phil Holmes wrote:

I've run a few with -j9 CPU_COUNT=9 this afternoon with no problems. The
only oddity I've noticed is that make doc make doc now seems to rebuild
a lot of files the second run.

--
Phil Holmes




I've hit a roadblock with issue 2125 which attempted to fix that make 
doc; make doc problem. With that patch, on my machine the second make 
doc reports `nothing to be done'. So it works on my machine but not 
yours and I haven't quite figured it out yet.


Regards,
Julien

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Re: make doc problem

2012-01-22 Thread Phil Holmes
- Original Message - 
From: Julien Rioux jri...@physics.utoronto.ca

To: Phil Holmes m...@philholmes.net
Cc: Jean-Charles Malahieude lily...@orange.fr; LilyPond Bugs 
bug-lilyp...@gnu.org; LilyPond Devel lilypond-devel@gnu.org

Sent: Sunday, January 22, 2012 6:35 PM
Subject: Re: make doc problem



On 22/01/2012 1:30 PM, Phil Holmes wrote:

I've run a few with -j9 CPU_COUNT=9 this afternoon with no problems. The
only oddity I've noticed is that make doc make doc now seems to rebuild
a lot of files the second run.

--
Phil Holmes




I've hit a roadblock with issue 2125 which attempted to fix that make doc; 
make doc problem. With that patch, on my machine the second make doc 
reports `nothing to be done'. So it works on my machine but not yours and 
I haven't quite figured it out yet.


Regards,
Julien



Please shout if you want logfiles or testing.  I can run tests fairly 
quickly if I've got my lily machine up and running.


--
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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 1:32 PM, Julien Rioux wrote:

The second issue I have not seen. If I correct a typo in a file in
Documentation then make doc will rebuild it. OK I should check
Documentation/fr right now...



When I edit Documentation/fr/essay/literature.itely and issue a make doc 
from within build/Documentation/fr then Documentation/fr/essay.tely is 
recompiled. I can see the result in Documentation/fr/out-www/essay/* and 
in Documentation/out-www/essay.fr.* [1]


Please report in more details the problems that you encounter, e.g. 
which file are you modifying and how are you calling make.


Thanks,
Regards,
Julien

[1] Big side note: It doesn't work flawlessly: notation.tely and a bunch 
of other manuals are also recompiled when they shouldn't, since I didn't 
touch any of their source files. This problem I trace back to the 
CHAIN_RULE in make/ly-rules.make, which I didn't dare touch up to now. 
This rule states that web depends on usage depends on notation depends 
on... etc. so that only one instance of lilypond-book is running at once 
on any given manual. As a side-effect it means that manuals depend on 
each other when that isn't in fact the case.


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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 2:11 PM, Jean-Charles Malahieude wrote:

What I've done to check is:
open Documentation/fr/usage/running.itely

add the five X at the beginning of the first text line

XCe chapitre passe en revue ce qui se passe lorsque vous lancez
LilyPond.

save it and make -j3 doc LANGS='fr'

File out-www/offline-root/Documentation/usage/running-lilypond.fr.html
still shows
Ce chapitre passe en revue ce qui se passe lorsque vous lancez LilyPond.

--
Jean-Charles


You're right, I forgot that I caused that. Give me a moment I will push 
the fix to staging...


Regards,
Julien

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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 2:15 PM, Julien Rioux wrote:

On 22/01/2012 2:11 PM, Jean-Charles Malahieude wrote:

What I've done to check is:
open Documentation/fr/usage/running.itely

add the five X at the beginning of the first text line

XCe chapitre passe en revue ce qui se passe lorsque vous lancez
LilyPond.

save it and make -j3 doc LANGS='fr'

File out-www/offline-root/Documentation/usage/running-lilypond.fr.html
still shows
Ce chapitre passe en revue ce qui se passe lorsque vous lancez
LilyPond.

--
Jean-Charles


You're right, I forgot that I caused that. Give me a moment I will push
the fix to staging...

Regards,
Julien


Done: 930dbeff8f5d31faa9654365c8ed84a30e489e83

Hope this fixes it for you as well.

Thanks,
Julien

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Re: make doc problem

2012-01-22 Thread Jean-Charles Malahieude

Le 22/01/2012 20:22, Julien Rioux disait :

On 22/01/2012 2:15 PM, Julien Rioux wrote:

On 22/01/2012 2:11 PM, Jean-Charles Malahieude wrote:

What I've done to check is:
open Documentation/fr/usage/running.itely

add the five X at the beginning of the first text line

XCe chapitre passe en revue ce qui se passe lorsque vous lancez
LilyPond.

save it and make -j3 doc LANGS='fr'

File out-www/offline-root/Documentation/usage/running-lilypond.fr.html
still shows
Ce chapitre passe en revue ce qui se passe lorsque vous lancez
LilyPond.

--
Jean-Charles


You're right, I forgot that I caused that. Give me a moment I will push
the fix to staging...

Regards,
Julien


Done: 930dbeff8f5d31faa9654365c8ed84a30e489e83

Hope this fixes it for you as well.



Yes, many thanks!

--
Jean-Charles


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Re: make doc problem

2012-01-22 Thread Julien Rioux

On 22/01/2012 2:38 PM, David Kastrup wrote:

Julien Riouxjri...@physics.utoronto.ca  writes:


I can't run -j, I have a single core.


This is factually incorrect.  You can run -j just fine, but you can't
expect much of a speedup.  On a single-core machine,

make -j 2

typically gives you a speedup of maybe 15% (given sufficient memory)
since the CPU can keep busy on processing a second job when the other
job is waiting for the disk to provide new input.

More importantly, you'll get to see the same kind of problems that the
true multi-core people experience when using -j.

So very much recommended for testing.



Thanks, you're quite right CPU is not the limiting factor for the build. 
Disk access and usage of swap when compiling 
input/regression/collated-files slows down the build to a crawl for me.


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Julien

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Re: make doc problem

2012-01-22 Thread James
Hello,

On 22 January 2012 20:05, David Kastrup d...@gnu.org wrote:
 Julien Rioux jri...@physics.utoronto.ca writes:

 Thanks, you're quite right CPU is not the limiting factor for the
 build. Disk access and usage of swap when compiling
 input/regression/collated-files slows down the build to a crawl for
 me.

 If it is really usage of swap: getting more memory will be by far the
 cheapest method of speeding up your computer much more than buying a
 faster CPU ever could.


getting an SSD will also help if you have run out of memory slots to fill.

-- 
--

James

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