Re: Question about OIO (was Hello list)

2006-03-11 Thread Nandalal Gunaratne
Andrew Ho [EMAIL PROTECTED] wrote:  Customizability is the main strength of OIO. It's main weakness is its installation! :-) The problem is the psycopgDA adaptor and the permissions having to be changed to postgres user. Can this compromise security?  Zope 3 works with python 2.4 and the psycopgDA 2.x version. This version of psycopgDA is more pythonish and the installation is far more transparent as a result. One day if OIO can migrate to zope 3 as a zxcm file, this may solve the problem!  Nandalal   On 3/10/06, Brian Bray  wrote: Thanks Denny and Aldric for the warm greeting. There have certainly been some interesting discussions while I was gone. (I'm just up to the end of 2003).Hi Brian,Welcome back! I hav
 e a
 question for Andrew Ho. In the discussion about Vista/OIO complementarity, you discussed the concept that OIO let's users safely customize forms.Each form has an unique form name and version number within each OIOserver instance:For example, "Psychiatric Progress Note version 1". Customizing a formcould mean 1) creating a new version using the same form name, or 2)copying some of the question items into a new form with a differentform name, or 3) changing an existing form version, which requiressafe migration of existing data. I'm curious how this is done, particularly related to the completeness and semantics of data elements.Completeness can never be assured without significantly restrictingcustomizability. For example, deleting the "Gender" question from anexisting form.Semantic connections between forms (and versions) require"translators" that are separately defined as
 necessary. I know I should RTFM, but a discussion might be more interesting...especially if some others with flexible systems can chime in.Sounds good!Best regards,Andrew--Andrew P. Ho, M.D.OIO: Open Infrastructure for Outcomeswww.TxOutcome.Org
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Re: small practice management programs

2005-12-17 Thread Nandalal Gunaratne
Karsten Hilbert [EMAIL PROTECTED] wrote: On Thu, Dec 15, 2005 at 09:47:17PM -0600, Ignacio Valdes wrote: Active projects: FreeMed, ClearHealth, OpenEMR, VistA, OSCAR,  SQLclinic I'm sure I've left some out. -- IVYes, GNUmed.Yes and it is apt-gettable.  NandalalKarsten-- GPG key ID E4071346 @ wwwkeys.pgp.netE167 67FD A291 2BEA 73BD  4537 78B9 A9F9 E407 1346__Do You Yahoo!?Tired of spam?  Yahoo! Mail has the best spam protection around http://mail.yahoo.com 

Re: larger FOSS work.

2005-09-17 Thread Nandalal Gunaratne


--- Ignacio Valdes [EMAIL PROTECTED] wrote:

 There's a remarkably good article called: Barriers
 to Proliferation of 
 Electronic Medical Records by some guy named Valdes.

It is a very good article, and I am happy to say I
know this guy from a mailing list.

Nandalal
 

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrievedb=pubmeddopt=Abstractlist_uids=15140347query_hl=3
 
 -- IV
 
 On Thu, 15 Sep 2005 21:23:26 -0500
   Bruce Slater [EMAIL PROTECTED] wrote:
  Thanks Ignacio for those edits and additions.
  Anyone,
  Any thoughts on a larger published work either in
 peer-reviewed or 
 web-published?
  Bruce
 
 


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Re: Attitudes of hospital workers towards electronic medical records

2005-05-20 Thread Nandalal Gunaratne

--- Franklin Valier [EMAIL PROTECTED] wrote:
 A case study is usually viewed in
 research circles as 
 just that.  Not nearly as valuable as empirical
 controlled studies.  

This is generally true. However doing a study of this
nature is not so simple and the planning of a
controlled study will make things pretty complicated.
The lack of similar studies makes it even more
difficult.

Several simple studies on this nature may give us
sufficient information to plan out an empirical
controlled study, as you yourself point out.
  Sometime they lead investigators into areas
 of further exploration.

Nandalal
 
 Frank Valier
 - Original Message - 
 From: J. Antas [EMAIL PROTECTED]
 To: openhealth-list@minoru-development.com
 Sent: Friday, May 20, 2005 8:52 AM
 Subject: Re: Attitudes of hospital workers towards
 electronic medical 
 records
 
 
 
  Joseph Dal Molin wrote:
  This is another example of garbage in = garbage
 out. I can't understand 
  how studies like this with a sample size of one, 
 are allowed to be 
  published in what appears to be a scholarly
 journal.
 
  I am sure that if you provide a better study with
 a lot more samples they 
  will be glad to publish it.
   I have often questioned the quality of peer
 review in academic
  medical informatics
  because of articles like this one...
 
  I wonder, were they simply praising and/or
 glorifying a new EHR/CPOE, 
  would you be so critical?
 
  The aeronautical industry only started to get
 really safe and reliable 
  after they started to exhaustively study all their
 accidents and/or 
  non-expected events.
 
  This combined with the software industry's legacy
 business model and 
  marketing are the greatest enemies for innovation
 in health care IT
 
  I would rather say that the worst enemy is failing
 to see the human factor 
  and the social issues as the main causes for
 Clinical IT failure.
 
  In healthcare I tend to agree with the Nicholas G.
 Carr's IT Doesn't 
  Matter principle.
  Seen at that light a Clinical IT system is not
 really different from using 
  a stethoscope or an ultrasonagraph. They are all
 limited means to reach a 
  common end: to better help other human beings.
 
   feel free to add more to the list.
 
  Fear not, I guess that my freedom has not being
 menaced yet.
 
  Best regards,
 
  J. Antas
 
 
  
 
 



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Re: Attitudes of hospital workers towards electronic medical records

2005-05-20 Thread Nandalal Gunaratne

--- Franklin Valier [EMAIL PROTECTED] wrote:
  However when an individual reads a
 case study and comes to the 
 conclusion that this is a major contribution to the
 development of knowledge 
 about the subject in question, it needs to be
 pointed out that it is just a 
 case study and where case studies fall within the
 scope of scientific 
 investigations.
This is a matter of the critical reading of all
literature. There is precious little we can do if the
reader is taken up with whatever appears in a journal,
irresespective of the quality and standing of the
journal in the community.

Within the limitations, all observational studies have
their uses, and in the abscense of the double blind
controlled trials, may indeed be all we can go, alas.

Nandalal
 
 - Original Message - 
 From: Tim Churches [EMAIL PROTECTED]
 To: openhealth-list@minoru-development.com
 Sent: Friday, May 20, 2005 7:22 PM
 Subject: Re: Attitudes of hospital workers towards
 electronic medical 
 records
 
 
 
  Franklin Valier wrote:
  In science this type of study only has value as
 to its scientifically
  agreed upon use.  Its ability to be relied upon
 to make reliable
  conclusions from the methodology has to be taken
 into perspective when
  reading the study.  It has value, but in science
 you don't take it too
  seriously.  We rely on empirical studies for
 serious evaluation of a
  phenomena.  If they haven't been done, all you
 can say is this is all
  have and this is all we know right now.  Not
 much.  I wouldn't get too
  upset about this.
 
  I think that you are being overly dismissive of
 observational studies.
  Controlled experiments are great, but a) they can
 be hard to arrange
  when the thing being tested is a hospital-wide
 information system which
  costs tens of millions of dollars to implement and
 b) controlled trials
  can introduce their own sets of biases and limit
 generalisability due to
  overly tight selection criteria. And how practical
 is it to randomise
  whole hospitals to get teh computer system or
 stay with paper?
  OPolitically that is rather hard to do.
 
  Certainly in the case of evaluations of
 implementations of hospital and
  other clinical infromations systems it is best to
 use a before-and-after
  study design, in which the hospital acts as its
 own matched control, and
  the same survey instruments and methods are used
 before and after the
  implementation of the system. It is easy to say
 that in retrospect, but
  getting money from management to commission an
 expensive evaluation
  study of a new information system BEFORE the
 system has even begun to be
  installed can be a challenge, I suspect.
 
  Tim C
 
  
 
 

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Re: Clinical IT increases documentation time

2005-05-08 Thread Nandalal Gunaratne

--- Daniel L. Johnson [EMAIL PROTECTED] wrote:
 On Sat, 2005-05-07 at 08:34, Jim Stuttard wrote:

:-)
Thank you Daniel for a historical note of what happens
when technology preceeds education and, stupid
people are given responsibility to maintain
information that  the clinician can make any sense of,
and will be expected to make sense of the stupid
stuff.

History will repeat itself no doubt, again and again
and


regards

Nandalal
  ...
  The UK Brit Med Assoc (BMA) complained the media
 that general practice  
  (GP) primary care doctors at ~10 min per
 appointment resented the  
  displacement of their focus away from the patient
 represented by  
  concurrent data entry.
 
 Once upon a time, 20 years ago, I became a (US)
 FAA-designated aviation
 medical examiner.  My nurse and I made little
 scribblings on our FAA
 form as we worked.  A healthy pilot took about 20
 minutes of her time
 and about 20 of mine; when we were done the
 secretary typed up our notes
 and the certificate nice and pretty, and the airman
 trudged off armed
 for duty.
 
 Then the FAA, to reduce their own paperwork burden,
 created a database. 
 The doctor or the secretary now typed *all* the
 information on the form
 into an DOS data entry screen.  By *all* I mean that
 the airman's
 responses had to by typed in as well.  In order to
 get the airman's
 certificate out the door in the same time as before,
 I 
   (a) bought a laptop computer
   (b) brought it into the exam room
   (c) typed his responses myself while interviewing
 him
   (d) typed my findings after examining him
   (e) printed the certficate by mounting it on a
 template and feeding
 this through my printer.
   (f) twice a month, I plugged in a modem and batched
 all the exams to
 the FAA database.
 
 Benefits:
   The airman had his ticket the moment we were done:
 no waiting for
 secretaries.
   The software knew the certification rules, so I
 didn't make stupid
 mistakes or leave out details.
 
 Drawbacks:
   It took 10 more minutes of my own time in the
 office.
   (Yes, I tried having the airman enter his own data,
 but repairing the
 damage took more time than doing it myself.  And
 some of these pilots
 are too stupid to understand how to fill out the
 paper form, never mind
 the computer.  Don't get me started...)
 
 It came to pass that the internet became a tool, and
 so the FAA decided
 to make this more efficient by having an on-line
 data entry tool, so
 that the information would be immediately captured
 by their database. 
 The AME was now required to have an internet
 connection and a browser.
 
 I will spare you the details; this new software was
 not well engineered,
 and the FAA purchased inadequate bandwidth.  The
 error-checking
 vanished, one had to wade through 8 successive
 data-entry pages, and (it
 being a browser) could not print a properly
 formatted certificate when
 done.  Back to the secretary.
 
 With all these advances, it now took an additional
 10 minutes of my time
 to complete a physical for an airman with no medical
 issues.  And
 meanwhile, computers and word processors flourished,
 and the secretaries
 have no typewriters, and the one remaining
 typewriter in our
 institution, a fine old IBM Wheelwriter, was
 bequeathed to me by our
 administrative secretary, who said, I'll come get
 if if I need it.
 
 The next advance in this system is to have the
 airman provide his data
 at home via the internet, directly entering his
 medical history via an
 encrypted page.  Never mind that half the airman
 need hand-holding and
 coaching to get the blanks filled in with the
 information that actually
 belongs there.
 
 The airman will then be provided a pass code to take
 to his flight
 surgeon (that's me).  We will pray that he writes it
 down; that he
 remembers where he put the note; that he brings it
 with him.  Then, when
 we have finally obtained the forgotten pass code by
 telephoning the
 support specialists in Oklahoma City, we will have
 to review his data
 and separately document correction of all his errors
 (rather than
 coaching him to do it right the first time).
 
 Yes, the efficiencies of IT EHR are indeed
 wonderful.  In this case, the
 efficiencies are all in the FAA offices.
 
 But I'm not complaining.  It's fun and entertaining,
 as these are mostly
 healthy folk and there's no pressure to do miracles.
 
 Dan Johnson md
 
 

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Re: Clinical IT increases the time intensive care nurses spenddocumentingcare.

2005-05-06 Thread Nandalal Gunaratne

--- Joseph Dal Molin [EMAIL PROTECTED] wrote:

 VistA's CPRS works with any Dragon based VR product
 out of the 
 boxand as I found out quite by accident at the
 recent American 
 College of Phys. conference it works with hand
 writing recognition 
 software that comes with the Toshiba Portege tablet
 computer


Is this the proprietary version of VistA CPRS or the
free version of Open VistA?


 
   Interestingly, the sorts of screen displays and
 data entry forms best
   suited to such head-mounted display devices are
 not complex GUIs, but
   rather very simple text-mode terminal displays,
 remarkably like the
   screens used by VistA 

The use of a text based browser maybe even more
useful. Like Lynx for example
 The whole thing acts as a voice-activated
 thin client,
  communicating with the main hospital systems via
 wireless networking.

Will this not compromise security? What about log-in
by voice recognition? I am aware that such systems are
being tested and they say a persons voice is almost as
good as a fingerprint.

Nandalal

Nandalal Gunaratne MS FRCS(Eng.)
Urological Surgeon




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Re: availability/uptake and - automation EMR or parts?

2005-04-25 Thread Nandalal Gunaratne

--- David Forslund [EMAIL PROTECTED] wrote:
 There is a joint effort between HL7 and the OMG to
 standardize such an 
 RLS.  I urge participation by those involved
 in these standards efforts.   There was a lot of
 work done on a RLS a number of years ago by the OMG
and we need to ensure that this RLS 
 service be interoperable as it develops.  I couldn't
find any significant specification for the RLS in the
references you
 gave. 
 
Hi,
On the proposed RLS
from
http://www.connectingforhealth.org/resources/collaborative_response/hie_model/3.php

The system supports

   1. Linking of records via a registry of information
about where records are located and sharing among
users participating in the system, but it also allows
   2. Linking without sharing, or sharing pursuant
only to higher authorization, as well as
   3. The ability to choose not to link information in
certain sensitive treatment situations determined by
users.

Should the last of these be determined by patients or
professionals? If patients determine what is linked
and not, much of the data collected by the doctor will
become unavailable to the doctor.

Will we need a type of Informed Consent from patients
as to 
1. If they are willing to have an EMR 
2. That they understand the risks (however good
security looks)ad that the clinician cannot be
responsible for the loss or leak of records.
3. That if they decide not to link parts of the EMR,
they will first discuss with the doctor before
delinking? That they may be harmed if this information
is not available in an emergency situation to the
clinician.

What about responsibility of problems due to errors in
data entry by the patient to his record, or by the
health care workers? If a clinician finds an error in
the patients own additions, can he correct it? Is he
responsible to that records accuracy as well?

Nandalal
 Dave
 Will Ross wrote:
 
  On 23 Apr 2005, at 3:25 AM, Adrian Midgley wrote:
 
  I am not convinced we always address the
 collection of problems and
  opportunities from the right aspect.
 
  I prefer to think about _automation_ rather than
 just an EMR, and about
  tools for tasks rather than a whole system.  I
 know that re-usable code
  and integration of different pieces is harder in
 practice than in
  theory, but ...
 
  I also believe we have not considered the use of
 the computer and
  network as a Knowledge Source for
 medical/healthcare practice
  sufficiently, and some distance remains, in
 England although it is
  decreasing, to the establishment of an ecology of
 people making a
  living, and technical resources aligned to FLOSS.
 
  Looking at the opinions published by the US
 Leapfrog Consortium, and
  reviewing my memories of the development of UK
 General Practice software
  over some decades, the prescribing system seems
 to be the first clinical
  tool to be of obvious value.
 
  This implies the presence of a register - a list
 of who is a patient/was
  a patient (but does not absolutely _require_ it,
 or require it to be
  complete).
 
 
  The Connecting for Health group (a fellow
 traveller to the Leapfrog 
  group) is working as we speak to deliver just this
 type of index. They 
  call it the Record Locator Service.  Their most
 recent technical 
  overview (Linking Healthcare Information
 published in February) is 
  available in pdf on the project home page at:
 
http://www.connectingforhealth.org/
 
  The RLS observes a distinction between knowing
 where a record is 
  located and knowing what is in the record.
 
  The OpenHRE project is following the RLS
 specification.
 
  [wr]
 
  - - - - - - - -
 
  will ross
  technology project management
  216 west perkins street, suite 206
  ukiah, california  95482  usa
  707.272.7255 [voice]
  707.462.5015 [fax]
 
  - - - - - - - -
 
 
  begin:vcard
 fn:David Forslund
 n:Forslund;David
 org:Los Alamos National Laboratory;CCS-DO
 adr;dom:;;MS B265;Los Alamos;NM;87545
 email;internet:[EMAIL PROTECTED]
 title:Laboratory Fellow
 tel;work:505-665-2633
 version:2.1
 end:vcard
 
 

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Re: GNUmed taking so long (was Re: )

2005-04-23 Thread Nandalal Gunaratne

--- Tim Churches [EMAIL PROTECTED] wrote:
 Nandalal Gunaratne wrote:


 I dare say that the GNUmed developers are a little
 concerned as to why
 so few people ever bother to help them. 

:-)

I am afraid that there are very few doctors who use
EMR. None of them use or want to use Linux. The sons
of two of the GPs are in the local LUG and therefore
are promoting this.

I am using OIO with Zope/Plone as my intention is to
use it for research/self audit. Plone is useful for
News/Event/discussion, documentation etc. I work in a
teaching hospital and have a local LAN. Therefore I
cannot really check out the software that I asked
about.

However, I will encourage the users to give feedback
and ideas.


I was in a small group which made a HIT policy
document to be sent to the government policy planners
to begin implementing e-Health. I tried to include the
fact that open standards and open source software
should be given preference. at this stage itself. But
it was turned down by the rest of the committee. It
will be considered in the implementing stage.


Nandalal


If you
 subscribe to the
 gnumed-devel mailing list you will see regular calls
 for people to help
 test the software. You don't need to be a programmer
 to contribute.
 
 Tim C
 
 

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Re:

2005-04-22 Thread Nandalal Gunaratne

--- Horst Herb [EMAIL PROTECTED] wrote:
 On Fri, 22 Apr 2005 13:28, David Derauf wrote:
  Horst: I was not clear enough:
  We are entertaining the idea of scanning medical
 records that we are
  copying for other purposes anyway.
  Thinking to the future, I thought that we should
 likely create some sort of
  meaningful file structure for these scanned
 records: one that is a) HIPAA
  compliant b) user friendly c) less likely to
 become obsolete d) inexpensive
  e) linkable to future EMR implementation...
 
 gnumed has a fully functional scanning + document
 archival module (one of the 
 few things in gnumed that actually work 

I am a little concerned a to why GNUMED is taling so
long. What is the FOSS that I can recommend to a
General Practitioner which actually works and is easy
to use.

I suggested OpenEMR with the Mandrake installer to a
couple of GPs. I have not used it though.

OSCAR will be more difficult to cope with i think.

tkFP is also something I have heard about.

Thanks

Nandalal
and are
 already in use in daily 
 practice for some time)
 
 Don't know HIPAA compliance requirements though,
 since I am not in the US
 
 Horst
 
 

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Re: Software patents (was Re: Blinkx (was Re: Meditech and GNU/Linux))

2005-04-09 Thread Nandalal Gunaratne

--- Tim Churches [EMAIL PROTECTED] wrote:
 Nandalal Gunaratne wrote:
  --- Tim Churches [EMAIL PROTECTED] wrote:
Hi Tim,

Thanks for the detailed answer and the link. I am
really concerned about FOSS development/migration in a
country with such patent laws. Sri Lanka has not got
patent laws yset. Copyrights and IP foor software was
brought in recently - two years ago - before that we
were a pirate state - well we still are in a much
smaller way :-)

I hope we never have patent laws, but I doubt it.

Regards

Nandalal
 
 Unfortunately, patents on software algorithms and
 business methods have
 been granted here in Australia since 1990, and the
 courts have upheld
 some of these patents (but have struck out others).
 The only saving
 grace is that the test for novelty was recently made
 more rigorous - now
 an invention does not meet the test of novelty if
 aspects of it have
 been described previously but in separate published
 documents, and if
 the combination of those components is obvious (to
 someone skilled in
 the art). In the past, an invention had to have
 been described in its
 entirety in one document to have been considered
 prior art - now the
 scope of prior art is much wider, which is a good
 thing, and will
 hopefully prevent many trivial software, algorithm
 and business methods
 patents which are just minor variations on a theme
 from being granted,
 or at worst, from being upheld in the courts.
 However, the whole system
 is still stacked ridiculously in favour of the
 patent applicant. I was
 shocked to learn that as a private citizen, in order
 to  object to the
 granting of a patent, not only do I need to pay a
 substantial
 opposition fee (about $600), if my objection is
 overruled by the
 Patents Commissioner, I have to pay the patent
 applicant's costs, which
 can run to thousands or tens of thousands of
 dollars. It seems that the
 patent system assumes that all patents are for the
 public good, and that
 anyone opposing a patent is just a troublemaker. We
 desperately need an
 organisation like PUBPAT (see http://www.pubpat.org/
 ) here in
 Australia. In fact, every country needs one!
 
 Tim C
 
 



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Re: Blinkx (was Re: Meditech and GNU/Linux)

2005-04-08 Thread Nandalal Gunaratne

--- Tim Churches [EMAIL PROTECTED] wrote:
 Nandalal Gunaratne wrote:
  Please try out blinkx on your windows machine
 before
  you delete it. www.blinkx.com
  A super new way to search - no linux version yet
 :-(
 
 Yes, some nice ideas there, but it is not open
 source, and without the
 source code, no-one can verify that the software
 does not contain
 spyware 
Hi Tim,

True!

BTW what is the position of Australia regards software
patents issue?

nandalal

(despite the authors claims to the
 contrary), perhaps using
 steganographic methods or subliminal channels to
 leak information about
 you and your PC to the outside world. Of course,
 that is true of any
 closed source software, but one has to be doubly
 careful with software
 from a small start-up company which deliberately
 dredges and indexes
 everything on your system. The same is true of
 Google Desktop Search,
 although Google has so much at stake (as in a entire
 multi-billion
 dollar company) and so many staff reveiewing code
 that it is much, much
 less likely that spyware functions would be hidden
 in it. But a small
 start-up? Who knows?
 
 Tim C
 
 I am an Endocrinologist in Hagerstown, Maryland
 who
 has been lurking on 
 this list for at least four years now and I
 finally
 have something 
 useful to report after several years of trying: I
 am
 now successfully 
 running Meditech Remote Workstation client version
 
 3.22 on top of 
 CrossOver Office version 4.2 over Debian Unstable
 using VPNC to connect 
 to my Hospital's network. I shall post a How To
 once
 I sort through what 
 are the truly essential steps to do this. It
 actually works better than 
 under native W2K. I was never able to get 
 pass-through printing working 
 under Windows. I can finally kiss my native
 windows
 partition goodbye!
 
 
  
  
  
  
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  Show us what our next emoticon should look like.
 Join the fun. 
 
 http://www.advision.webevents.yahoo.com/emoticontest
  
  
 
 



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Re: Meditech and GNU/Linux

2005-04-07 Thread Nandalal Gunaratne

--- slippman [EMAIL PROTECTED] wrote:

Well done!

i do not know about Meditech, but will do a search.
Please write your HowTo before any goodbye kisses! At
least we will have a copy on the list if everything
disappears.
Please try out blinkx on your windows machine before
you delete it. www.blinkx.com
A super new way to search - no linux version yet :-(

nandalal
 I am an Endocrinologist in Hagerstown, Maryland who
 has been lurking on 
 this list for at least four years now and I finally
 have something 
 useful to report after several years of trying: I am
 now successfully 
 running Meditech Remote Workstation client version 
 3.22 on top of 
 CrossOver Office version 4.2 over Debian Unstable
 using VPNC to connect 
 to my Hospital's network. I shall post a How To once
 I sort through what 
 are the truly essential steps to do this. It
 actually works better than 
 under native W2K. I was never able to get 
 pass-through printing working 
 under Windows. I can finally kiss my native windows
 partition goodbye!
 
 



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Re: LMN: Windows VistA Client Running on Linux

2005-04-03 Thread Nandalal Gunaratne

--- Ignacio Valdes [EMAIL PROTECTED] wrote:
I think this is very a  very interesting development.
I am not clear if we need BOTH WINE and Crossover
office or only one of them.

'There are some problems with Report and Lab tabs but
most of it works. We would love to have folks chip in
and sort out the last few bugs. It is easy to install.
You just need the latest version of Wine or Crossover
Office'

It seems that the word or suggests either

However erlier in the article

Joseph Dal Molin of WorldVistA reports success in
getting the VA Computerized Patient Record System
(CPRS) VistA client running on Linux using WINE and
Crossover office. 
and suggests we need both.

Please clarify

Nandalal Gunaratne
 As many as 98,000 people die each year as a result
 of preventable 
 medical errors which Free and Open Source electronic
 medical records 
 software could reduce. A contender in this area is
 the Veterans 
 Administration (VA) public domain VistA codebase and
 large community. 
 In a major advance for FOSS in medicine, Joseph Dal
 Molin of 
 WorldVistA reports success in getting the VA
 Computerized Patient 
 Record System (CPRS) VistA client running on Linux
 using WINE and 
 Crossover office. The CPRS client formerly ran only
 on the Microsoft 
 Windows operating system and is widely deployed on
 thousands of 
 workstations within the United States VA system.
 More details of this 
 development and a screenshot can be found here:

http://www.linuxmednews.com/linuxmednews/1112336432/index_html
 
 



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Re: Linux Medical News is 5 Years Old

2005-04-03 Thread Nandalal Gunaratne

--- Ignacio Valdes [EMAIL PROTECTED] wrote:

Ignacio,

Your work is much appreciated. You deserve amny
fishing holidays.

Nandalal Gunaratne
 Linux Medical News is 5 years old as of yesterday.
 It all began with 

http://www.linuxmednews.com/linuxmednews/954458835/index_html
 the 
 first posting. Since that time, there have been 970
 posted articles, a 
 great deal of editing, and millions of visitors. Has
 the landscape 
 changed much since then? Is the work finished?

http://www.linuxmednews.com/linuxmednews/1112317813/index_html
 
 -- IV
 
 



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Re: LMN: Windows VistA Client Running on Linux

2005-04-03 Thread Nandalal Gunaratne

--- Ignacio Valdes [EMAIL PROTECTED] wrote:

Is there a howto anywhere about downloading and
installing OpenVista?

Thanks

Nandalal Gunaratne
 As many as 98,000 people die each year as a result
 of preventable 
 medical errors which Free and Open Source electronic
 medical records 
 software could reduce. A contender in this area is
 the Veterans 
 Administration (VA) public domain VistA codebase and
 large community. 
 In a major advance for FOSS in medicine, Joseph Dal
 Molin of 
 WorldVistA reports success in getting the VA
 Computerized Patient 
 Record System (CPRS) VistA client running on Linux
 using WINE and 
 Crossover office. The CPRS client formerly ran only
 on the Microsoft 
 Windows operating system and is widely deployed on
 thousands of 
 workstations within the United States VA system.
 More details of this 
 development and a screenshot can be found here:

http://www.linuxmednews.com/linuxmednews/1112336432/index_html
 
 



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Re: web based applications - Mozilla

2004-10-22 Thread Nandalal Gunaratne

--- Horst Herb (lists) [EMAIL PROTECTED]
wrote:

 On Tuesday October 19 2004 00:09, Calle Hedberg
 wrote:
  By the way:
  One of my collegues - who also is Open Source
 oriented - this morning
  warned me against using Firefox, alleging that it
 is full of spyware. He
  said he had installed it on a Linux box and
 intercepted a lot of
  suspicious traffic.
 
 This is plain rubbish.
 Tell your colleague he is a bloody ignorant and
 should know better than just 
 spreading FUD.

I agree. Calle is also getting unnecessarily involved
in this spread?



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Re: web based applications and PRINTING

2004-10-20 Thread Nandalal Gunaratne

 On Tue, 2004-10-19 at 05:29, Wayne Wilson wrote:
 
  I hate to say it, but we gave up on HTML based
 printing and moved to
  PDF.  For our programmed apps we use the output
 from the apache FOP
  project:  http://xml.apache.org/fop/


The use of Latex maybe the way to solve this issue.
The development of conversion tools allowing single or
multiple HTML to Latex conversions will get the files
in a format meant for printing.
http://html2latex.sourceforge.net

Conversion of latex PS to pdf is much better than HTML
to PDF.


 
 Just to add to the list.a very good FOSS PDF
 library for Python apps
 is ReportLab http://www.reportlab.org/ 
 
 HTH,
 Tim
 
  
 
 




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Re: Dasher (was Re: CPOE time studies.)

2004-10-15 Thread Nandalal Gunaratne
It is already working in many languages. It has great
potential, and kids will love it too! It is like a
game, and has potetial as a language teaching
application.

To make it work in medical application is just a
matter of time.

i have been using it for some time now, and my speed
is pretty good! Your medical words also come up
quickly. It is like using the Tab key in Linux!

Nandalal
--- Bruce Slater [EMAIL PROTECTED] wrote:

 Haven't tried it yet, but will.
 
 It seems from the demo to be a little difficult if
 you have to navigate the 
 whole universe of a language.
 
 Has anyone trained it on their own clinical notes
 and then tried to write a 
 note?
 
 It seems like you could customize the predictive
 engine by substituting 
 meta-regions that correspond to sections of a
 progress note or complete 
 health exam. For example instead of an alphabet,
 present the main headings 
 of a note. Chose a heading like Family History.
 Within that the universe 
 would be very limited and navigation very obvious
 and quick. Once an family 
 member was picked, then common familial illness
 would populate the right 
 side of the screen. Any time a free text was needed
 a tunnel into classic 
 Dasher could be used to create text. An escape area
 would take the user back 
 to Family history level to chose another ancestor
 and then dive back into 
 organized text. When done with Family history the
 escape would lead to the 
 main level where social history could be chosen.
 
 Maybe it is just late at night, but this seems like
 a potentially 
 revolutionary tool for handhelds and an interesting
 idea for note creation 
 on desktops.
 
 Is someone working on a medical version?
 
 Bruce Slater
 - Original Message - 
 From: Horst Herb [EMAIL PROTECTED]
 To: [EMAIL PROTECTED]
 Sent: Thursday, October 14, 2004 10:34 PM
 Subject: Re: Dasher (was Re: CPOE time studies.)
 
 
  On Fri, 15 Oct 2004 06:59, Tim Churches wrote:
  I suspect it would be much better that the
 Graffiti handwritten letter
  recognition system used on my PalmPilot too. If
 it is good on a
  PalmPilot, then it would be good on other PDAs.
 
  it's brilliant on my Zaurii
 
  Horst
 
  
 
 




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Re: Dasher (was Re: CPOE time studies.)

2004-10-15 Thread Nandalal Gunaratne

--- Horst Herb [EMAIL PROTECTED] wrote:
 it's brilliant on my Zaurii

Great! It is fun too isn't it?

Nandalal

 
 Horst
 
 


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Re: CPOE time studies.

2004-10-15 Thread Nandalal Gunaratne

--- Horst Herb [EMAIL PROTECTED] wrote:

 On Fri, 15 Oct 2004 01:00, Andrew Ho wrote:
  Nandalal,

 If I really concentrate, I am faster with Dasher
 than with the keyboard - but 
 after a while it gives me a headache. It feels like
 a very fast computer 
 game.

True! I think the colours are the problem. I wouldn't
use it to write a book :)

However it is great for short notes on mobile devices.
The trouble is that they have tiny screens and I am
over 40 :(

Soon we will wear something like the virtual reality
glasses on Bluetooth and the mobile device screen will
lool like a football field ?
Aha! Then Dasher will rise again..

Nandalal

Nandalal Gunaratne
Urological Surgeon
Sri Lanka

 
 Horst
 
 




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Re: CPOE time studies.

2004-10-14 Thread Nandalal Gunaratne
Andrew,

I want you to look at http://www.dasher.com

Nandalal
--- Andrew Ho [EMAIL PROTECTED] wrote:

 On Mon, 4 Oct 2004, Don Grodecki wrote:
 
  Sounds to me like a job for Tablet Computers!
 
 Don,
   As far as I know, lack of full-size keyboard
 dramatically diminishs the
 utility of tablet computers for applications that
 require text data entry.
 
 Best regards,
 
 Andrew
 ---
 Andrew P. Ho, M.D.
 OIO: Open Infrastructure for Outcomes
 www.TxOutcome.Org
 
 




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Re: physician prescribing tool development

2004-10-13 Thread Nandalal Gunaratne

--- Adrian Midgley [EMAIL PROTECTED] wrote:

 On Tuesday 12 October 2004 22:36, Daniel L. Johnson
 wrote:
 
  I believe that the browser is useful for
 development because it
  minimises the time spent on developing the
 presentation layer and can be
  platform independent.  
 
 I'm more and more impressed with thin clients -
 whether VNC or rdesktop or 
 some variant of X over ssh.

How secure are VNC and rdesktop compared to SSH? Cna
we use SSH with VNC?

Nandalal
 
 
 -- 
 Adrian Midgley   Open Source
 software is better
 GP, Exeter  
 http://www.defoam.net/
 
 




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Fwd: Re: Issue of freedom and migration, Re: CPOE time studies and a word from the other side.

2004-10-13 Thread Nandalal Gunaratne

Note: forwarded message attached.


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--- Tim Churches [EMAIL PROTECTED] wrote:

I am not sure about these arguments. Migration is one
issue as it is a possible permanent loss of a skilled
person from one country to another.

There is a loss of British, Australian, Austrian and
others who also move to the USA for example. This is
promoted by the USA too. The number of British
scientists who have been recruited in such a manner to
the US is well known. Do you think the British have
not lost?

The other problem is that the skilled medical or
others in the poorer countries are not given the
facilities to work. They can be thoroughly frustrated
as a result. Their knowledge and skill is NOT
appreciated in their own country. They maybe too
qualified and skilled for the country of their origin.
They try really hard to do something useful but nobody
cares to help - particularly the administrators.

They can be lost to their own citizens.  What if some
other country can make use of them to help their own
people, and they want to have a better health care
system, and can and will give them the conditions they
need to work to the best of their skill and knowledge?
Must they be lost to everyone?

Take away migration. Many of them do NOT want to
migrate, They want to work w few years in another
country which will allow them to improve their skills
and knowledge and also earn enough to save something
and go back to their own country. This is good for
both countries. If this is encouraged and made easier
to do, but migration is not, then neither side will
lose.

Nandalal

 On Wed, 2004-10-13 at 05:41, Andrew Ho wrote:
  On Tue, 12 Oct 2004, Karsten Hilbert wrote:
  
 When the UK, Canada or Australia recruits
 such a person to work in the
 UK, Canada or Australia, do they reimburse
 the South African government
 for the cost
   
Double standard you use.
   No. Or rather, yes. Question is WHY a double
 standard is used.
   Tim believes applying a double standard is the
 morally right
   thing to do in this particular situation.
  
  This discussion needs to include consideration of
 personal freedom and
  discrimination (or preferential treatment) based
 on country of origin.
 
 Indeed, and our argument is that there should NOT be
 preferential
 treatment, through active recruitment and assisted
 migration, of skilled
 health care professionals from needy countries to
 wealthy countries. I
 think we are in violent agreement.
 
 -- 
 
 Tim C
 
 PGP/GnuPG Key 1024D/EAF993D0 available from
 keyservers everywhere
 or at
 http://members.optushome.com.au/tchur/pubkey.asc
 Key fingerprint = 8C22 BF76 33BA B3B5 1D5B  EB37
 7891 46A9 EAF9 93D0
 
 
 
 




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---End Message---


Re: language help

2004-04-09 Thread Nandalal Gunaratne
Hi,
--- [EMAIL PROTECTED] [EMAIL PROTECTED] wrote:
 Hi All,
 
 When my system has not crashed I make data permanent
 all the time with a 
 CDRW
 and DVD-RW device. Actually, I could have someone
 else do it as well, 
 and I could
 setup a cron job to do it later.

I do not think it is possible to setup a cron job to
backup to a CDRW or DVDRW device in Linux systems yet.
It maybe possible when Linux supports writing to UDF
file systems. Now it just supports reading these file
systems.

If I am wrong can someone tell me how to do this
successfully?


Nandalal

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Re: From Sweden: Open source in developing countries

2004-02-19 Thread Nandalal Gunaratne
Hi Tim,

Thanks for the article. I am very much aware of the position of OSS in Sri Lanka, and 
I feel that it is time to push the concept of FOSS as the e-government and e-Lanka 
initiatives are to be implemented soon. The SL government has signed an MOU with 
Microsoft Corporation and the ministry of Education also went for MS solution. However 
thankfully, the MOU does not bar the use of OSS anywhere.

I was the only proponent of OSS for health care in SL, until a few others joined me, 
after being convinced. It is a difficult task, and I wonder if OSS will be taken 
seriously by government or even be considered a threat, as little or no money will 
change hands.

I see little support from funding agencies. Sri Lanka also has very lax laws relating 
to the use of software and therefore has become a paradise for pirated software. One 
can buy Windows XP and Office XP porfessional for less than US$ 2 and use it! Under 
such a scenario OSS makes even less sense. Tighter laws and regulations related to 
pirating (which affects local software produces as well) are expected as this has been 
one of the demands of Microsoft Corporation. Strangely such regulation and punishment, 
may give the biggest boost to FOSS over here! The cost of proprietary software even at 
half the price in USA will be impossibel for majority of uses to afford.

Nandalal

- Original Message -
From: Tim Churches [EMAIL PROTECTED]
Date: 19 Feb 2004 09:35:30 +1100
To: openhealth-list @ minoru-development . com [EMAIL PROTECTED]
Subject: From Sweden:  Open source in developing countries

 This report, commissioned by the Swedish govt development agency (and
 referenced by the IOSN site) is useful:
 
 http://www.sida.se/Sida/jsp/polopoly.jsp?d=1250a=23955
 
 Nothing startling, but a nice review of the background and an
 examination of open source business models in poor countries, plus some
 case studies in Sri Lanka. Nice. One day soon it will be possible to
 produce a health-specific version of such a report.
 -- 
 
 Tim C
 
 PGP/GnuPG Key 1024D/EAF993D0 available from keyservers everywhere
 or at http://members.optushome.com.au/tchur/pubkey.asc
 Key fingerprint = 8C22 BF76 33BA B3B5 1D5B  EB37 7891 46A9 EAF9 93D0
 
 
 signature.asc 

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Re: Australia and open source

2004-01-14 Thread Nandalal Gunaratne

- Original Message -
From: Tim Churches [EMAIL PROTECTED]
Date: Wed, 14 Jan 2004 14:36:49 +1100
To: openhealth-list @ minoru-development . com [EMAIL PROTECTED]
Subject: Re: Australia and open source

 All it means is that neither of the major political parties will introduce open 
 source affirmative action legislation or policies - that is, active discrimination 
 in 
 favour of FOSS when software acquisitions are being made. However, that 
 doesn't mean that FOSS won't be considered by government agencies - indeed, 
 govt officials must consider FOSS as part of of their due diligence 
 responsibilities to ensure that the taxpayer gets best value for their tax dollars.  
 The ACT legislation was just reminding them of that fact.

I guess this is a good thing. However there are those who are opposed to FOSS who will 
always try to make government be vary of considering FOSS. The fact often used was 
that FOSS was insecure and that there is no support. However these are now being 
proven wrong. The issue that does remain is the licensing issue of FOSS like GPL. With 
the problems of the law suits involving Linux code, this can be used against FOSS. 
Maybe someone should make people in government, aware of the GPL and othe FOSS 
licensing. Using GPL does NOT mean that all products from it have to be GPL. The 
concerns of governments of making all the products based on FOSS, say the 
modifications done to make it suitable for use in Australia, will have to be put on 
the public domain may not be acceptable. From what I know -correct me if I am wrong, 
there is no absolute that the modifications have to be placed in the public domain.
These issues must be worked out or..
http://www.zdnet.com.au/newstech/os/story/0,248630,20282661,00.htm

Nandalal Gunaratne
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Australia and open source

2004-01-13 Thread Nandalal Gunaratne
http://australianit.news.com.au/articles/0,7204,8381302%5E15441%5E%5Enbv%5E15306-15319,00.html

The decision. Was it based on the middle path or the money path?
:)
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Re: openEHR, gnumed, OIO,OpenEMed, FreeMED, SQLClinic, VistA, etc. etc.

2004-01-07 Thread Nandalal Gunaratne
Horst, You do write some great stuff!

I am seriously worried about these standards, their complexity, the continuous chages, 
their failure to succeed in getting to be used. I have studied them the best I can, 
and I feel they are hopeless in the way they are implemented.

Just imagine some country starting a EHR and e-health project. To succeed the end 
usersd must be happy to use them, and must benefit from them immediately. If things 
are complicated  due to the fact that there is conflict in what standards to implement 
and when, and this affects the speed of implementation, the whole thing may fail.

I wonder if standards cannot be implemented to allow communication between systems 
that already exist, and can be implemented and insinuated into prevailing systems? 
Will some simple guidelines to the end user software - eg: data should be exportabl;e 
as XML etc. may not suffice?

Excellent end user software in EHR, not having any standards are being used and liked 
by many clinicians around the world. I feel that end users will go their own way in 
the prevailing atmosphere relating to standards.

Will it really matter to the patient? to the clinician? If so to what extent?

Thank you for any enlightenment :)

Nandalal Gunaratne

- Original Message -
From: Horst Herb [EMAIL PROTECTED]
Date: Wed, 7 Jan 2004 21:05:33 +1100
To: [EMAIL PROTECTED]
Subject: Re: openEHR, gnumed, OIO,OpenEMed, FreeMED, SQLClinic, VistA,etc. etc.

 On Wed, 07 Jan 2004 20:48, Thomas Beale wrote:
  I wouldn't know for most of these but it seems reasonable. My only
  comment is that this classification is fine for a sort of maturity index
  of software; things like openEHR have a lot of work in the specification
  space, shared (pioneered) by OMG HDTF, CEN 13606, HL7 and others, which
 
 You know that I am all for standards, and you are certainly right in many 
 ways.
 However, the sad reality is that standards in our domain don't work. Very sad.
 
 But in a world where you can't even get the some rogue but very influential 
 countries to agree to most sensible standards with straightforward benefits 
 such as adherence to the metric system, what hope is there for health care 
 standards?
 
 Corbamed is sensible and fairly complete in the sense that you can implement 
 it here and now and do something useful with it. I know OpenEMED has 
 implemented some, but honestly: hands up how many world wide installations 
 are there of any Corbamed system? So much for Corbamed as a standard.
 
 And HL7? It is still a sad joke. Despite it's (probably entirely unnecessary) 
 complexity it still doesnn't fulfill any expectations.  I haven't seen yet 
 any two not-inhouse systems that can talk to each other HL7 without need for 
 a home baken translation level. And even then things can go wrong (see the 
 pathology download tragical comedy in Australia).
 
 And CEN standards? I'd love to see them work in our domain, but please point 
 me to any significant installations using them.
 
 Standards that work nowadays and make everybodies life easier have arisen out 
 of somebody actually doing something, and the process of becoming a 
 de-facto standard has been helped by either sheer commercial market 
 domination or complete openness. Complex domain specific standards 
 developed on the white board and then imposed onto humanity have not often 
 worked well AFAIK.
 
 So, once again: I love standards. I wish standards to penetrate our domain 
 thoroughly. But for standards to have any impact on evaluation of actually 
 existing projects they would need to be more meaningful than what we have, 
 and they definitely would need more acceptance than they currently have.
 
 Horst
 

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Re: openEHR, gnumed, OIO,OpenEMed, FreeMED, SQLClinic, VistA,etc. etc.

2004-01-06 Thread Nandalal Gunaratne

- Original Message -
From: Fred Trotter [EMAIL PROTECTED]
Date: 06 Jan 2004 10:15:12 -0600
To: OpenHealth [EMAIL PROTECTED]
Subject: Re: openEHR, gnumed, OIO,OpenEMed, FreeMED, SQLClinic, VistA,etc.  etc.

 
 I am emailing them to see if they would add our projects if we did our
 review in the same format. 

Did you notice OpenEMR? It is free open source! Is it OpenEHR in disguise?

 
 Talk about demonstrating cost effectiveness!!!
 
 Fred Trotter
 
 
 
 On Tue, 2004-01-06 at 10:13, Ignacio Valdes wrote:
  Interesting site that I've never heard of before. Thanks for the link. 
  Unless I am missing something, I note that there appears to be no FOSS 
  EMR's on the site. Could the usual suspect projects infect the site? 
  Yes, I know I'm supposed to be camping. I haven't left yet. 
  
  -- IV
  
  On 06 Jan 2004 06:32:40 -0800
Tim Cook [EMAIL PROTECTED] wrote:
  On Mon, 2004-01-05 at 09:26, Kevin Coonan MD wrote:
  While not an independent study, you may find this comparison matrix
  helpful. 
  
  http://www.elmr-electronic-medical-records-emr.com/
  
  Cheers,
  -- 
  Tim Cook (President, Open Paradigms,LLC) [EMAIL PROTECTED]
  Public Key - 1024D/9ACDB673 available from: 
  http://www.openparadigms.com/timcook_publickey.asc
  Key fingerprint = C7BB 675B BDCA B87D 83F0  A002 BBDC C7B8 9ACD B673
  
 -- 
 Fred Trotter [EMAIL PROTECTED]
 SynSeer
 signature.asc 

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Re: [Fwd: RE: Dynamic data collection forms in VistA? (was RE: Vistaon the BBC News Web-site)]

2003-12-29 Thread Nandalal Gunaratne
I see little exciting: in this development. It is giving a web interface to VistA. 
But interoperability is a loose term. I think they are thinking of one or two other 
systems and no further.
What is the license under which it is produced? Is it open sourced?

Nandalal
- Original Message -
From: Tim Churches [EMAIL PROTECTED]
Date: 30 Dec 2003 12:25:27 +1100
To: openhealth-list @ minoru-development . com [EMAIL PROTECTED]
Subject: [Fwd: RE: Dynamic data collection forms in VistA? (was RE: Vistaon the BBC 
News Web-site)]

 Thanks to Steven Tomlinson for pointing this out - sounds exciting!
 
 http://www.pacifichui.org/media/press_releases/JanusNewsRelease_final.pdf
 
 Tim C
 
 -Original Message-
 From: Tim Churches [mailto:[EMAIL PROTECTED]
 Sent: Sunday, December 21, 2003 11:50 AM
 To: openhealth-list @ minoru-development . com
 Subject: Dynamic data collection forms in VistA? (was RE: Vista on the
 BBC News Web-site)
 
 
 Nandalal Gunaratne wrote: 
  Yes, I have one question. Is it possible to link OIO to VistA in some way.
 
 Jim Self wrote:
 
  My approach at this point is to take basic web oriented tools from VMACS
 and combine them
  with Vista installation on GT.M and Linux with Apache. Then I can expose
 VistA data and
  design to the web making it easier for me and others to understand, to
 potentially reverse
  engineer, and, of course, that also opens possibilities for re-engineering
 VistA
  applications for the web.
 
 Hmmm...thinks...one of the features of MUMPS (or rather, M) is its
 highly flexible and dynamic data storage and retrieval architecture,
 closely allied to a dynamically interpreted language. Unlike
 OO-languages and SQL, there is little impedance mismatch between the M
 language and the M storage system. Given that, I wonder if it would be
 possible to create an Epi-Info/OIO-style facility for Vista, written in
 M, with a Web interface, which permits end users to easily create and
 modify data collection forms which are attached to different parts of
 the (very extensive) VistA data model? It might be easier to handle
 issues such as table schema updates with M than it is to handle with SQL
 data stores. So, rather than link OIO to VistA, it might be possible to
 re-implement aspects of OIO as part of VistA (and/or other M-based
 ssytems). That way, end-user data forms and data would be stored with
 all the other VistA data, and would benefit from being backed-up in the
 same way, and could be supported by the same infrastructure as the rest
 of VistA. Obviously such a project would only be of interest to VistA or
 other sites running M-based systems, but as we have heard, there are a
 surprising number of these - 140 hospitals in the US VA system alone.
 That's a fairly large ready-made user base for such a facility, and as
 Nandalal notes, it would be sure to be popular.
 
 Thoughts?
 
 -- 
 
 Tim C
 
 PGP/GnuPG Key 1024D/EAF993D0 available from keyservers everywhere
 or at http://members.optushome.com.au/tchur/pubkey.asc
 Key fingerprint = 8C22 BF76 33BA B3B5 1D5B  EB37 7891 46A9 EAF9 93D0
 
 -- 
 
 Tim C
 
 PGP/GnuPG Key 1024D/EAF993D0 available from keyservers everywhere
 or at http://members.optushome.com.au/tchur/pubkey.asc
 Key fingerprint = 8C22 BF76 33BA B3B5 1D5B  EB37 7891 46A9 EAF9 93D0
 
 
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Re: hub, spoke, new Esperanto for healthcare, was Re: form-to-form translator, was Re: Solving the data type problem, was: ODB vs. RDMBS was: OIO-0.9.1 released

2003-12-28 Thread Nandalal Gunaratne
 Exactly! That's the goal. But to do that, we need to describe a lot of
 medicine to computers in a way that they can understand.

This is one of the things we are trying to do. This does not need a standardization 
but rather a framework on which to develop, collect, information and to share them. 
Sharing forms is one simple way, sharing the structure on which a form should be 
built to allow sharing and comparison is another necessity.

A good simple example is the ICD10 Procedure Coding System. The system has developed a 
structure to facilitate coding which makes a way a computer will understand. This 
may look strange initially but once learnt makes for a less verbose, simple 
structured way of collecting data.

What do you think?


Nandalal
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Re: OpenEHR vs. OIO semantics infrastructure, was Re: form-to-formtranslator, was Re: Solving the data type problem, was: ODB vs. RDMBS was:OIO-0.9.1 released

2003-12-28 Thread Nandalal Gunaratne
This can be handled by OIO

Andrew will tell you better :) But the Oncological Surgeon im my hospital does this 
using OIO - a cancer registry. I will tell him to try and write to me and send me the 
OIO forms he uses, but he is away at the moment.

I too keep records of cancner patients using the forms developed by the UK NHS 
Oncology Group. OIO allows me to keep complete records of each admission, operation, 
histology reports in continuity - this is particularly important in bladder cancer 
patietns in my field of Urological Surgery.

Nandalal
- Original Message -
From: Tim Churches [EMAIL PROTECTED]
Date: 28 Dec 2003 09:01:50 +1100
To: openhealth-list @ minoru-development . com [EMAIL PROTECTED]
Subject: Re: OpenEHR vs. OIO semantics infrastructure, was Re: form-to-formtranslator, 
was Re: Solving the data type problem, was: ODB vs. RDMBS was:OIO-0.9.1 released

 On Sun, 2003-12-28 at 05:11, Andrew Ho wrote:
  Yes, OIO forms can be adopted for a national database of clinical
  concepts. For example, the Philippines national cancer registry can create
  a set of OIO forms - each form describes the initial presentation of a
  cancer case at the time of first diagnosis.
  
  In this example, the top level clinical concept is cancer case at the
  time of first diagnosis - which is modeled via an OIO form. For example,
  the Prostate Cancer Detected form, the Ovarian Cancer Detected form,
  etc.
  
  Within each OIO form, there will be multiple concepts (=Question Items)
  that serve to describe each reported cancer case.
 
 Cancer registries are something I know a bit about, having worked in one
 for a while. So how would OIO handle a cancer registration system?
 
 The basic model for a population-based cancer registry is as follows:
 Each person in the (usually geographically-defined) target population
 may have zero or more cases of cancer. A person is defined by their
 demographic details, (name, DOB, sex, address etc) and some of these
 details may change over time, and these changes need to be recorded. A
 case of cancer is distinguished by time of diagnosis, tissue of origin
 (topology) and histology (morphology). There are some additional rules
 relating to metachronous tumours in paired organs or the same organ
 (cancer of the left kidney in 1982, and of the right kidney in 1989, or
 multiple colon cancers appearing over tyhe course of a decade). For each
 case of cancer, there are zero or more of each of the following:
 histology reports, treatments, hospital admissions, and various other
 details, and zero or one date and cause of death.
 
 Andrew, perhaps you could sketch out a word picture of how that would be
 handled in OIO, for our education? Or even a rough sketch of an
 implementation in OIO?
 
 -- 
 
 Tim C
 
 PGP/GnuPG Key 1024D/EAF993D0 available from keyservers everywhere
 or at http://members.optushome.com.au/tchur/pubkey.asc
 Key fingerprint = 8C22 BF76 33BA B3B5 1D5B  EB37 7891 46A9 EAF9 93D0
 
 
 signature.asc 

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Re: OpenEHR vs. OIO semantics infrastructure, was Re: form-to-form translator, was Re: Solving the data type problem, was: ODB vs. RDMBS was: OIO-0.9.1 released

2003-12-28 Thread Nandalal Gunaratne
The same goes for SNOMED-CT. It is a proprietary standard and very expensive for 
poorer countries. So how can this become a standard nomenclature? Hopefully ICD-10-CM 
will see the light of day soon
BTW
ICD-10 -PCS seems very promising to me - even though not yet implemented.

Nandalal

- Original Message -
From: Horst Herb [EMAIL PROTECTED]
Date: Sun, 28 Dec 2003 18:08:53 +1100
To: [EMAIL PROTECTED]
Subject: Re: OpenEHR vs. OIO semantics infrastructure, was Re: form-to-form 
translator, was Re: Solving the data type problem, was: ODB vs. RDMBS was: OIO-0.9.1 
released

 On Sun, 28 Dec 2003 13:12, Thomas Beale wrote:
  exactly - this is the problem of N^2 translation that HL7v2 has. I was
  just saying that Andrew's statement that HL7 has failed is not totally
  correct; and regardless of the shortcomings (of which I can be as
  critical as anyone else), there are quite a lot of implementations, and
  there is a measure of success. It's been a step on the path, and a lot
  of things were learned.
 
 A lot has been learned, yes. But Andrew's statement - if we only look at what 
 is actually available AND in use today - is correct: HL7 has been en 
 exteremly expensive failure so far. A failure for more than a decade, that 
 is.
 
 Current development looks promising and I wish them wholehearted success - but 
 in one aspect they haven't learned from their past errors, and I consider 
 this non-learning a gloomy sign: that is, they don't publish their work 
 freely. You have to become a member to access their standards. It does not 
 matter that membership is cheap - even a cent a year would not be acceptable 
 fpr the very reason that a standard cannot be a practical and ubiquitously 
 accepted standard (such as POP3, HTTP, HTML) unless the specifications are 
 freely accessible to anybody.
 
 Unless they start understanding this crucial issue, I reckon they are doomed. 
 No matter how much more money governments throw after them. The world in 
 general is not very fond of such closed gentlemen's clubs, and end user 
 tolerance for such behaviour is close to zero nowadays.
 
 Horst
 -- 
 On two occasions I have been asked [by members of Parliament!], 'Pray, Mr.
 Babbage, if you put into the machine wrong figures, will the right answers
 come out?'  I am not able rightly to apprehend the kind of confusion of ideas
 that could provoke such a question.
 -- Charles Babbage
 

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Re: Columbia Presbyterian's Eclipsys experience, was Re: More UK NHSCare Record contracts announced

2003-12-24 Thread Nandalal Gunaratne

 
 Dave,
 
 Please ask Jim whether he would be willing to go on record and us an
 email outlining their experience? (via this publicly archived mailing
 list)
 
 Private grumblings won't get any of us anywhere. We need to learn to name
 names and tell the truth.

I agree. Indeed i received an email saying myemails to the list as of some others were 
being censored?
I hope this is untrue.

Nandalal
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Re: hub, spoke, new Esperanto for healthcare, was Re: form-to-form translator, was Re: Solving the data type problem, was: ODB vs. RDMBS was: OIO-0.9.1 released

2003-12-24 Thread Nandalal Gunaratne
Horst,

I agree with you completely. To think that the whole of medicine can be standardised 
is  to set forth on a never ending, increasingly frustrating quest. There are too many 
areas. In a sense let us start with the end user and tell them to collect data, and 
let them collect data in a way which makes it easy to build communicating portals for 
sharing information in a flexible way. Let the programmers worry about getting them to 
communicate rather than trying to tell them HOW they should communicate.

regards

Nandalal

- Original Message -
From: Horst Herb [EMAIL PROTECTED]
Date: Wed, 24 Dec 2003 14:14:43 +1100
To: [EMAIL PROTECTED]
Subject: Re: hub, spoke, new Esperanto for healthcare, was Re: form-to-form 
translator, was Re: Solving the data type   problem, was: ODB vs. RDMBS was: OIO-0.9.1 
released

 On Wed, 24 Dec 2003 12:32, Andrew Ho wrote:
  3) My proposal is to build hubs from the bottom-up - based on OIO forms
 that are in-use. Analagous to building a dictionary - opposite from
 building an universal language. Let's learn something from
 the failure of Esperanto,
 
 A MAJOR point, and I see this failure happening all over again and again, be 
 it in the domain of coding (where countless professionals have been mucking 
 around for decades in the quest for the ultimate coding system instead of 
 settling for a thesaurus like growing dictionary of terms) or in the domain 
 of health record architectures
 
 I'd wish we would settle for small independent modules all communicating via 
 *simple* protocols (like XML-RPC via HTTPS or Jabber), using self-growing 
 terminology dictionaries.
 
 I don't believe we need a monolithic architecture. All we need is well defined 
 APIs to extract and submit data.
 
 I don't believe these APIs need to be consistent/synchronized/monolithic:
 - there is no reason why demographic information should be dealt with in the 
 same way as for example vaccination records or a cardiovascular examination 
 or drug interactions.
 
 If our systems get too complicated, we will never get there. With all due 
 respect, the ADL of OpenEHR looks to me like a further complication rather 
 than simplification for example - yet another mini language where I believe 
 that using existent versatile markups (like YAML) could have the achieved the 
 same goal with less steep learning curve and the benefit of human 
 readability.
 
 Horst
 

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Re: Options for Argus, Re: Argus correction

2003-12-22 Thread Nandalal Gunaratne
Horst,

Well said!

Kick some butt and more! :)

Sickle rather than honey works - unfortunately. The thing to do is to educate the 
doctors and nurses and other medical staff, get them to use OSS, collect some 
documents from here and there to the beurocrats and show them that others are using 
them too, harp on the advantages and refuse to dodge issues.

I like that style too. People fought many wars and killeed many people for the sake of 
religion. We fight for a just cause and kill no one! That is a JUST fight!

Nandalal


- Original Message -
From: Horst Herb [EMAIL PROTECTED]
Date: Mon, 22 Dec 2003 08:47:53 +1100
To: [EMAIL PROTECTED]
Subject: Re: Options for Argus, Re: Argus correction

 On Mon, 22 Dec 2003 08:04, Tim Churches wrote:
   There really isn't any point in being nasty about the civil servants.
 
  Thank you Adrian! Bureaucracies can sometimes act in surpringly positive
  ways in response to encouragement and even well-argued, polite
  exhortation, but always bunker down or harden their position in the face
  of outright criticism and dismissive epithets.
 
 For four long years I tried with gentle persuasion and providing a continuous 
 flow of easy-to-read educational material. Achievement? Close to zero. The 
 inertia of bureaucracy apparently takes more than just a smile and gentle 
 words to overcome.
 
 Recently I started involving taxpayers / consumers association, the press, and 
 direct attacks against particular bureaucrats personally. As soon as they 
 feel their taxpayer funded comfortable nest is shaking, they suddenly spring 
 into action and things actually do happen. Surprise, surprise.
 
 I dislike such methods, especially since dealing with the bureaucrats I got to 
 know some in person, and once you establish personal contact you realize we 
 are all humans, with the usual fears and longings and families to feed.
 
 OTOH we have a situation where a whole nation suffers, health is more 
 expensive than it needs to be through bureaucratic overload, and positive 
 development either doesn't happen at all or is delayed in a most unacceptable 
 way through the incompetence or inertia or both combined of these same 
 bureaucrats.
 
 Furthermore, as a busy full time medical practitioner, I simply haven't got 
 the time to linger around in Canberra and smear honey around the mouths of 
 these sloths. This financial year, I may end up paying a six figure sum in 
 taxes. I can damn well demand some action for that money, and it is my damn 
 right to kick some shins to achieve this. Public servants are employees of 
 the public after all.
 
 Horst
 -- 
 Parkinson's Fifth Law:
 If there is a way to delay an important decision, the good
 bureaucracy, public or private, will find it.
 

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Re: How VistA inspired OIO, RE: Vista on the BBC News Web-site

2003-12-22 Thread Nandalal Gunaratne
 An administrative solution would be to hire more MUMPS programmers. A
 technical solution is to build a system that helps non-programmers to do
 more. We have barely begun. :-)

This is what is necessary if we are to get e-health initiatives going. As a cliniciian 
I like to do things myself - at least to a great extent. I like systems I can change 
easiy, create things of my own, share these with others, change it to use for other 
purposes in the hospital, change it easily to a native language for those who are not 
too proficient in English.

If I have to go looking for a busy programmer and beg for (or pay for indeed, if that 
brings quick results) help, then wait for a month to be told that it is 
difficult/unacceptable or that special permisionis needed to do those changes. I 
will just dump that system :)

Nandalal
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Re: How VistA inspired OIO, RE: Vista on the BBC News Web-site

2003-12-22 Thread Nandalal Gunaratne
Ignacio,
Thanks! How exactly does this work I wonder?
Anyway this is one point in going with programs like Zope and languages like Python. 
They are going places and linking to everything :) For exanple not only to almost all 
database programs but to statistics programs like R as well!

Nandalal

This is 
- Original Message -
From: Ignacio Valdes [EMAIL PROTECTED]
Date: Sun, 21 Dec 2003 18:19:39 -0600
To: [EMAIL PROTECTED]
Subject: Re: How VistA inspired OIO, RE: Vista on the BBC News Web-site

 Some folks at the Houston VA are using Plone for their intranet 
 portal. They have built an interface for the MUMPS based phone 
 directory in DHCP for it. Therefore, the bridge to ZOPE has been done 
 at least once already. -- IV
 
 On Sun, 21 Dec 2003 14:24:06 -0800 (PST)
   Andrew Ho [EMAIL PROTECTED] wrote:
 On Sun, 21 Dec 2003, Nandalal Gunaratne wrote:
 ...
  Is it possible to link OIO to VistA in some way.
 
 Nandalal,
This has been one of my dreams since 1997. :-)
 
 

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Re: Worldvista installation.

2003-12-22 Thread Nandalal Gunaratne
Tim,

  
  Is is hours, days, weeks, monthsto get a running system of sorts.
 
 One or two hours only to install VistA, but yes, days or weeks to
 configure it. I gather that some VistA experts are working on a demo
 system, which packages a pre-configured mini-hospital. But bear in mind
 that VistA could probably run most aspects of, say, RNSH, and hence the
 fact that configuration of even a minimal system might takes days or
 weeks is hardly surprising.

I was under the impression that we install the basic install of VistA and then add the 
various applications, which are neither open source nor free :(

How easy is it to add these applications? Which of them are FOSS?
For end users, this part at least should be easy! I may get a VistA expert (Or get Jim 
a ticket to fly over) to install the base VistA but if I have to get one for every 
application I get for VistA, i wouldn't want VistA at all.

When I first tried OIO, it was quite difficult to set it up, but wonderfully easy to 
use. 
However, with some help across miles ;) I DID set it up on a server in the hospital 
and got it linked to 16 clients about a year or so ago, to form an embryological FOSS 
based fibre-optic linked network in my hospital. I have not have to setup the server 
since, which is amazing!! It runs on RedHat Linux 7.2 and OIO 0.9.9pre.

Now an OIO is easy to setup - and everyone likes the LiveOIO CD - it is love at first 
sight! Oh! except for one thing. It has a whole host of psychiatry related forms for 
demonstration purposes ;)

I have no programming knowledge whatsoever except for a pretty good knowledge of HTML 
- which is not programming -strictly speaking. My experience with OIO has been, that 
it is great for clinicians. Many of us, including myself being a specialist surgeon, 
work in more than one hospital. Thus the beauty of LiveOIO! Indeed purel;y as a 
clinician, I can happily get along with this, until hospitals are linked!

The problem is that I cannot bring this data back and feed it to the main databse in 
the hospital. If OIO and VistA links in such a manner - we have a near perfect system.

A dream..?

Nandalal
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Re: Options for Argus, Re: Argus correction

2003-12-21 Thread Nandalal Gunaratne
 
 I wish they would have just said - We no longer hold the copyright, its
 out of our hands.
Absolutely! This was what I thought all through the discusssion!! But what have the 
Argus team of helpless developers done about this? What were their attempts if any 
which were foiled by the beurocrats. This is what I would like to know next.

Nandalal
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Re: Argus usefulness, was Re: Learning from Argus, Re: How to killopen-source project via funding, was Re: Argus correction

2003-12-21 Thread Nandalal Gunaratne
Richard,
 An advantage of an https approach is that the software (except for the
 ssl related client) is maintained centrally on a server, and a remotely
 installed application (such as argus, which looks complex), does not
 need to be installed and maintained. Just imagine the problems that
 could occur with ensuring that version of a particular JVM's on the
 workstations of 12,000 GPs throughout Australia.

I tried, but it is too hard :)

I would like to know if the hospitals in Australia keep EMRs at all and if so what 
they use? Is anyone using FOSS?

Nandalal
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Re: How VistA inspired OIO, RE: Vista on the BBC News Web-site

2003-12-21 Thread Nandalal Gunaratne
Andrew, 
 It's getting long. I think I should stop here - if anyone is interested,
 just ask, I will clarify and/or continue. :-) 
Yes, I have one question. Is it possible to link OIO to VistA in some way. For example 
clinicians like me are mostly interested in EMR and related data. Can I collect 
information via OIO and feed this into VistA?

I feel that VistA maybe viable if the proposed modifications are made to run in a 
hospital system, and since it is used in several hospitals, maybe more acceptable for 
Health officials here who are more interested in administrative, accounting, records 
etc and these are established in a VistA system.

However OIO would be very popular with clinicians, especially as it is a wonderfully 
flexible and now mobile system. OIO for now do nat have all the various applications 
that VistA has developed, though one day it well could do so :)

Since you know VistA and OIO, what do you think?

Nandalal
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Re: Vista on the BBC News Web-site

2003-12-19 Thread Nandalal Gunaratne
 http://news.bbc.co.uk/1/hi/technology/3331739.stm

Interesting. But this is very old software and maybe unsuitable for the purpose. Open 
source software has gone very far indeed since the days of VistA. It will eventually 
cost the poorer countries to go in for obsolete software.

Nandalal

Nandalal Gunaratne
Urological Surgeon
Colombo South
Teaching Hospital
Sri Lanka
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Re: re :Why do health IT projects fail

2003-12-03 Thread Nandalal Gunaratne
 The flip side of this question, is probably where we should actually be
 spending our time
 What makes health IT projects succeed?
 Gary Kunkel

I think failures overshadow success in this field. This is higher in the hospital 
based clinical IT projects from the literature. It may also be that the way we measure 
success is flawed.

What is success? How do we measure/compare one Health IT project with another? Has 
there been initial success and then failure? What was this due to?

Maybe we should each talk of our own experiences with such projects, and discuss this 
matter further?

Nandalal

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Re: LiveOIO-1.0.6 released

2003-11-02 Thread Nandalal Gunaratne
Andrew,

This is tremendous work! Congratulations
 
 LiveOIO-1.0.6 provides OIO-1.0.6 with 22 pre-built forms, an example
 schedule, and several workflows (patient screening and schizophrenia
 study).

I wish there were some of our forms as well, but I am entirely to blame...
 
 Thanks to Tim Churches and Adrian Midgley's strong advocacy, we now have
 single-click, database backup and restore of OIO metadata and data via
 icons on the Desktop:
 
 1) backup (creates /home/knoppix/publicdb.zip)
 2) restore (converts /home/knoppix/publicdb.zip back into publicdb in
  PostgreSQL)
 3) saveToUSB (copies publicdb.zip to USB storage device)
 4) readFromUSB (copies publicdb.zip from USB to /home/knoppix).

 This means we can create custom demo data and save them to USB storage
 device (USB memory sticks are plug-and-play via Knoppix). Forms,
 workflows, patient, and other OIO data can be saved and reload back into
 PostgreSQL for the next demo session. The same mechanism can also be used
 to simplify backup/restore of PostgreSQL database in production
 environment (running Knoppix/Debian from hard drive).

Ah! It does work in the Hard Drive installation. Good!
 
 While LiveOIO-1.0.6 comes configured to use USB device, it is clearly
 quite simple to slightly modify the saveToUSB and readFromUSB methods to
 save to and restore from any local (e.g. floppy drive) or remote network
 drive.

True. I am hoping to backup to CDRW media. Once Knoppix supports UDF packet writing 
this would bw simpler.
 
 An interesting implication is that it is now possible to build OIO
 production servers that run entirely from CD-ROM and RAM - with periodic
 auto-backup to networked storage or solid state memory, like USB connected
 flash drives.

This is MOST interesting! OIO must be the only EMR system which can do this! If you 
may remember  I wrote to you in an email of this possiblity when we discovered 
Knoppix. I have been speaking of this to my colleagues and now it has come true! With 
RAM being cheap, it maybe possible to use an older PC with lots of RAM as a server 
with USB or CD backup! This has great implications in the developing countries where 
buying new computers is very expensive. In my country we can buy 5-7 used Pentium II 
PCs ( DELL/IBM) for one new one.
 Your criticism and comments are sincerely invited.

Criticisms will be reserved for the future if things don't work as expected. Now there 
is only praise and open moutheed wonderment and a few gasps :)

Regards and all the best 

Nandalal
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Re: (Open)VistA and SNOMED/Coding systems

2003-10-13 Thread Nandalal Gunaratne
It is unfortunate that SNOMED is a proprietary system, and quite costly to use and 
maintain. IT is likely that many will stick to ICD coding systems and classifications 
systems. The recent compltetion of ICD-10-CM and ICD-10-PCS may mean that SNOMED may 
not catch on in the way it was expected.

Nandalal Gunaratne


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Re: LiveOIO-1.0.0.rc2 released

2003-10-10 Thread Nandalal Gunaratne
Andrew,

Great going!
 The entire process of running OIO on any PC now only involves 2
 mouse-clicks after booting the CD! Installing to hard-drive still only
 requires opening a shell-terminal window and typing knx-hdinstall.

Maybe you could have a HDinstall icon as well on the KDE desktop to install and avoid 
opening a shell terminal window at all. Morphix does this. So does Mepis.

At the rate OIO is going, I would advice all to write to CDRW and save the world from 
plastic pollution :)

 I have also included 1 form (Meeting), 1 schedule, 1 workflow, and 2
 patients. I think it is helpful to include more forms on LiveOIO. Please
 send me forms that you think will be worthwhile including. Anything that I
 receive by Oct 16, 2003 will have a good chance of becoming part of
 LiveOIO-1.0.0. My estimate is to include somewhere between 20-30 forms.
 Current aim is to release LiveOIO-1.0.0.final by Oct 17, 2003 - a week
 from now. We have time to do .rc3 if someone finds a serious bug.

I will send some forms - if I remember to do it that is!
 
 Dennis Halladay's new date, date_time, time component should make it into
 LiveOIO-1.0.0.final. 
Can Dennis tell us and write a little thing about it? 
Vadim and Alex's fracture classification wizard may
 also make it.
Our orthopaedic surgeon will be very interested when he returns from the Swiss Alps.

 Per Mark's strong recommendation, Frozen-Bubble is once again included.

Frozen bubble? Can Mark please tell us what is so special about this program/game?


Nandalal
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Re: Any open Source clinical trials management systems?

2003-10-09 Thread Nandalal Gunaratne
Andrew,
It is being used extensively by an Oncological surgeon as well! 
 
 The OIO software has not been used for oncology, to my knowledge. However,
 it is being used in Psychiatry, Orthopaedics, and Urology. Gary Kantor
 prototyped it last year for an Anesthesia outcomes project. Since it
 supports arbitrary, user-definable forms, there is no reason why it cannot
 be easily used for oncology studies. Recently, our orthopaedics colleagues
 submitted code for a multi-step, fracture classification widget. We should
 be able to integrate that into OIO in the next few weeks.
 
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Re: Secure HL7 transport?

2003-09-23 Thread Nandalal Gunaratne
 Maintenance and installs are legitimate issues but I don't see any advantage
 of any options in this respect.   There is and has been a standard
 for doing all of this cross platform and cross language.  It is available
 fully in open source.  The install and maintenance are no worse than
 any of the other options which don't deal with cross platform and cross 
 language.
 Currently XML is becoming the favored alternative mechanism to support 
 cross platform
 and cross language, but is still several years away of equaling the 
 standard solution.

Has anyone looked and GNUStep?
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