[PyMOL] RE: easy (?) question (DeLano, Warren)
2. Let's Introduce Your Company To China Government (investcn2...@yahoo.com.cn) ^ ^ ^ ^ Shouldn't that have been filtered out? So long as the N and C atoms are also present, the ribbon representation can do this. It looks for CA atoms three bonds apart to form the trace. To get a linear C-alpha trace (no smoothing), set ribbon_sampling 1 This is a bit unobvious (at least for me) wouldn't it be good to have this as an extra menu-point (i.. CA-trace)? -- Bye, Marc Saric
[PyMOL] Linux install problem
I am having a problem installing PyMol 0.80 on my (Redhat 7.1) Linux box. I already have Tcl, Tk, Python 2.1, zlib and libpng so I just made libglut from the ext-0.79 package. cd $PYMOL_PATH/ext ./build.com glut-linux The GL libraries are in strange places on my system, so I made the following links: ln -s /usr/lib/libGL.so.1 $PYMOL_PATH/ext/lib/libGL.so ln -s /usr/lib/libGLU.so.1 $PYMOL_PATH/ext/lib/libGLU.so ln -s /usr/X11R6/lib/modules/extensions/libGLcore.a \ $PYMOL_PATH/ext/lib/libGLcore.a Then I built the PyMol program cd $PYMOL_PATH/pymol vi Rules.make make The 'make' succeeds, but when I execute pymol.com, I get Traceback (most recent call last): File /ebi/research/thornton/ligands/gareth/src/pymol-linux/pymol/modules/launch_pymol.py, line 19, in ? import pymol File /ebi/research/thornton/ligands/gareth/src/pymol-linux/pymol/modules/pymol/__init__.py, line 137, in ? import _cmd ImportError: /usr/X11R6/lib/libICE.so.6: shared object not open This shared object file exists - is there any reason why this error should occur? Gareth P.S. I don't have root access on this system --- Gareth Stockwell PhD student, Thornton Group EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD gar...@ebi.ac.uk Tel 01223 492548 http://www.ebi.ac.uk/~gareth
RE: [PyMOL] Linux install problem
Gareth, That is an unusual error. I suspect it has something to do with your symbolic links, which isn't the most reliable way to solve the dependency problem. Instead, delete those symlinks, and modify Rules.make to seek out the system libraries in the usual location. Rules.linux-rh7x should be your starting point for Rules.make. Cheers, Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 FAX:(650)-266-3501 -Original Message- From: Gareth Stockwell [mailto:gar...@ebi.ac.uk] Sent: Friday, May 03, 2002 4:00 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Linux install problem I am having a problem installing PyMol 0.80 on my (Redhat 7.1) Linux box. I already have Tcl, Tk, Python 2.1, zlib and libpng so I just made libglut from the ext-0.79 package. cd $PYMOL_PATH/ext ./build.com glut-linux The GL libraries are in strange places on my system, so I made the following links: ln -s /usr/lib/libGL.so.1 $PYMOL_PATH/ext/lib/libGL.so ln -s /usr/lib/libGLU.so.1 $PYMOL_PATH/ext/lib/libGLU.so ln -s /usr/X11R6/lib/modules/extensions/libGLcore.a \ $PYMOL_PATH/ext/lib/libGLcore.a Then I built the PyMol program cd $PYMOL_PATH/pymol vi Rules.make make The 'make' succeeds, but when I execute pymol.com, I get Traceback (most recent call last): File /ebi/research/thornton/ligands/gareth/src/pymol-linux/pymol/m odules/launch_pymol.py, line 19, in ? import pymol File /ebi/research/thornton/ligands/gareth/src/pymol-linux/pymol/m odules/pymol/__init__.py, line 137, in ? import _cmd ImportError: /usr/X11R6/lib/libICE.so.6: shared object not open This shared object file exists - is there any reason why this error should occur? Gareth P.S. I don't have root access on this system -- - Gareth Stockwell PhD student, Thornton Group EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD gar...@ebi.ac.uk Tel 01223 492548 http://www.ebi.ac.uk/~gareth
RE: [PyMOL] Let's Introduce Your Company To China Government
From: Marc Saric [mailto:marc.sa...@mpi-dortmund.mpg.de] 2. Let's Introduce Your Company To China Government (investcn2...@yahoo.com.cn) ^ ^ ^ ^ Shouldn't that have been filtered out? Absolutely. After digging into the settings, I found that SourceForge doesn't protect these lists by default (grumble), but I changed the settings so only list members will be able to post from now on. Contact me directly if you have any trouble posting. We lost about 5 subscribers from that PRC spam. - Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 FAX:(650)-266-3501
