Yes, I believe this is the case. -Michael
On Sat, Jan 9, 2010 at 4:20 AM, Jason Vertrees <jason.vertr...@gmail.com>wrote: > Michael, > > I don't think this is possible with PyMOL. Distance measures are > calculated from objects. > > -- Jason > > -- > Jason Vertrees, PhD > jason.vertr...@schrodinger.com > > PyMOL Product Manager > Schrodinger, Inc. > > > > On Fri, Jan 8, 2010 at 7:05 PM, Michael Zimmermann <micha...@iastate.edu> > wrote: > > Dear PyMol users, > > > > I wonder if anyone knows a way to select atoms that are near a region > > of electron density. > > > > Say I have a binding pocket in atomic detail, but the ligand binds > > transiently and non-specifically, so I just have an approximate > > electron density could for it. Is it possible to select atoms in an > > object that are near to these density levels? Alternatively, can you > > turn a map into an object that can be used in this way (fill it with > > dummy atoms)? > > > > Thank you, > > > > Michael Zimmermann > > > > > ------------------------------------------------------------------------------ > > This SF.Net email is sponsored by the Verizon Developer Community > > Take advantage of Verizon's best-in-class app development support > > A streamlined, 14 day to market process makes app distribution fast and > easy > > Join now and get one step closer to millions of Verizon customers > > http://p.sf.net/sfu/verizon-dev2dev > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and > easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Michael Lerner, Ph.D. IRTA Postdoctoral Fellow Laboratory of Computational Biology NIH/NHLBI 5635 Fishers Lane, Room T909, MSC 9314 Rockville, MD 20852 (UPS/FedEx/Reality) Bethesda MD 20892-9314 (USPS)
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