Hi Simon,
On Mon, 08 Mar 2010 18:09:31 +0100 Simon Lindhoud simon.lindh...@wur.nl
wrote:
Dear all,
Unfortunately I'm not really familiar with programming in Python (yet) but
I've encountered a problem with MacPyMol in running the script that can be
found here:
http://cavanagh-lab.bch.ncsu.edu/bobay/intranet/pymol/data2bfactor.py
That is a slightly older version of my script, although I don't believe that
is the problem.
I've tried a couple of things to get the script running, and in the end I
managed to narrow the problem down to the fact that the file that contains
the data for the new b-factors is not imported correctly. I have made a text
file, containing four columns that I've copied from excel; the Chain, the
residue number, the residue name, and the b-factor. These columns are
separated by tabs. In the script this code is used to determine the number
of columns in my file:
words = line.split()
# check number of columns of data
if len(words) == 4:
etc
Apparently, this is where it goes wrong because if I print the words
variable. I get the total number 'words' in my input file instead of the
number of columns...
Does anybody know the solution to this problem?
It sounds like the file as it is read by the script is completely on one
line. I wonder if this is the old UNIX vs MSDOS line ending problem. Did the
data file happen to come from a Windows computer?
Cheers,
Rob
--
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Senior Research Associate/Adjunct Assistant Professor
Botterell Hall Rm 644
Department of Biochemistry, Queen's University,
Kingston, ON K7L 3N6 Canada
Tel: 613-533-6821Fax: 613-533-2497
robert.campb...@queensu.cahttp://pldserver1.biochem.queensu.ca/~rlc
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