[R] Assistant

2019-10-26 Thread basiru shehu
I am Basiru Shehu by name, wishing to conduct my research base on the
multivariate Behrems Fisher problems, please I need your help with a manual
that I can use to analyse the data using R. Thanks so much.

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[R] [R-pkgs] packageRank (v.0.3.0) update

2019-10-26 Thread Peter Li
packageRank: compute and visualize package download counts and rank
percentiles

* compute and visualize the counts and ranks (nominal and percentile) of
downloads from RStudio's CRAN mirror and Bioconductor.
* compute and visualize a package's position in the overall distribution of
download counts for a given day (cross-sectionally) or over time
(longitudinally).
* compute and visualize the downloads of the R application.

CRAN: https://cran.r-project.org/package=packageRank
GitHub: https://github.com/lindbrook/packageRank

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Re: [R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread Bert Gunter
Yes , thanks Deepayan. Darn! -- I've committed this error in the past,
also, but keep forgetting. Sigh... the aging brain.

-- Bert

Bert Gunter

"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Sat, Oct 26, 2019 at 8:55 AM Deepayan Sarkar 
wrote:

> On Sat, Oct 26, 2019 at 8:22 PM Bert Gunter 
> wrote:
> >
> > No. relevel() only changes the order in one specific way. Use
> `levels<-`()
> > to reorder in a general way:
> >
> > > z <- factor(rep(letters[3:1],2))
> > > z
> > [1] c b a c b a
> > Levels: a b c
> > > z <-relevel(z, ref = "c")
> > > z
> > [1] c b a c b a
> > Levels: c a b
> > > levels(z)<- c("c","b","a")
> > > z
> > [1] c a b c a b
> > Levels: c b a
>
> No, that changes the data, not just the order of the levels; "b" and
> "a" have been switched.
>
> You need some version of
>
> > factor(z, levels = c("c", "a", "b"))
> [1] c b a c b a
>
> See also ?reorder for a useful way of reordering the levels,
> especially in plots.
>
> -Deepayan
>
> > Cheers,
> > Bert
> >
> > Bert Gunter
> >
> > "The trouble with having an open mind is that people keep coming along
> and
> > sticking things into it."
> > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
> >
> >
> > On Sat, Oct 26, 2019 at 6:09 AM Patrick (Malone Quantitative) <
> > mal...@malonequantitative.com> wrote:
> >
> > > Try using relevel() to organize the categories in your factor in the
> > > desired order. You may need to use relevel(as.factor()) .
> > >
> > > On Sat, Oct 26, 2019 at 6:51 AM April Ettington
> > >  wrote:
> > > >
> > > > Hi,
> > > >
> > > > When I use ggpubr with an x-axis utilizing descriptive categories
> (eg.
> > > bar
> > > > chart for different colors of car), it sorts all of the labels
> > > > alphabetically.  Is there a way to change this so it shows in the
> order I
> > > > want?
> > > >
> > > > Thanks,
> > > >
> > > > April
> > > >
> > > > [[alternative HTML version deleted]]
> > > >
> > > > __
> > > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > > PLEASE do read the posting guide
> > > http://www.R-project.org/posting-guide.html
> > > > and provide commented, minimal, self-contained, reproducible code.
> > >
> > > __
> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> > > http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>

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Re: [R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread Patrick (Malone Quantitative)
Thanks, both of you.

On Sat, Oct 26, 2019 at 11:55 AM Deepayan Sarkar
 wrote:
>
> On Sat, Oct 26, 2019 at 8:22 PM Bert Gunter  wrote:
> >
> > No. relevel() only changes the order in one specific way. Use `levels<-`()
> > to reorder in a general way:
> >
> > > z <- factor(rep(letters[3:1],2))
> > > z
> > [1] c b a c b a
> > Levels: a b c
> > > z <-relevel(z, ref = "c")
> > > z
> > [1] c b a c b a
> > Levels: c a b
> > > levels(z)<- c("c","b","a")
> > > z
> > [1] c a b c a b
> > Levels: c b a
>
> No, that changes the data, not just the order of the levels; "b" and
> "a" have been switched.
>
> You need some version of
>
> > factor(z, levels = c("c", "a", "b"))
> [1] c b a c b a
>
> See also ?reorder for a useful way of reordering the levels,
> especially in plots.
>
> -Deepayan
>
> > Cheers,
> > Bert
> >
> > Bert Gunter
> >
> > "The trouble with having an open mind is that people keep coming along and
> > sticking things into it."
> > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
> >
> >
> > On Sat, Oct 26, 2019 at 6:09 AM Patrick (Malone Quantitative) <
> > mal...@malonequantitative.com> wrote:
> >
> > > Try using relevel() to organize the categories in your factor in the
> > > desired order. You may need to use relevel(as.factor()) .
> > >
> > > On Sat, Oct 26, 2019 at 6:51 AM April Ettington
> > >  wrote:
> > > >
> > > > Hi,
> > > >
> > > > When I use ggpubr with an x-axis utilizing descriptive categories (eg.
> > > bar
> > > > chart for different colors of car), it sorts all of the labels
> > > > alphabetically.  Is there a way to change this so it shows in the order 
> > > > I
> > > > want?
> > > >
> > > > Thanks,
> > > >
> > > > April
> > > >
> > > > [[alternative HTML version deleted]]
> > > >
> > > > __
> > > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > > PLEASE do read the posting guide
> > > http://www.R-project.org/posting-guide.html
> > > > and provide commented, minimal, self-contained, reproducible code.
> > >
> > > __
> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> > > http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.

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Re: [R-es] Duda de como contar casos por Programa.

2019-10-26 Thread Carlos Ortega
Hola,

Lo puedes resolver de esta forma...
He comentado el código para que puedas seguir el resultado de cada etapa.

#
library(randomNames)
library(dplyr)
library(tidyr)

# Genero nombres aleatorios de "pacientes".
## - Estos son algunos de los que coincidirian
nom_coin <- randomNames(50, ethnicity = 4)

## - A los que coincidirian les anado otros puramente aleatorios
mis_datos <- data.frame(
  prog_A = sample(c(nom_coin, randomNames(70, ethnicity = 1)), 100, replace
= FALSE),
  prog_B = sample(c(nom_coin, randomNames(70, ethnicity = 1)), 100, replace
= FALSE),
  prog_C = sample(c(nom_coin, randomNames(70, ethnicity = 1)), 100, replace
= FALSE),
  prog_D = sample(c(nom_coin, randomNames(70, ethnicity = 1)), 100, replace
= FALSE)
)

# - Construyo las combinaciones dos a dos de las columnas
res_cols <- as.data.frame(t(combn(names(mis_datos), 2)))
res_comb <- as.data.frame(t(combn(1:ncol(mis_datos), 2)))
res_tot <- cbind(res_cols, res_comb)

# - Comparo las parejas de columnas
for(i in 1:nrow(res_tot)) {
  val_inter <- intersect(mis_datos[, res_comb[i,1]], mis_datos[,
res_comb[i,2]])
  res_tot[i, 5] <- length(val_inter)
}
res_out <- res_tot[, c(1,2,5)]
names(res_out)[3] <- c('Qty')

# - Construyo la tabla final
res_table <- res_out %>%
   pivot_wider(names_from = V2, values_from = Qty )
res_table

#

Saludos,
Carlos Ortega
www.qualityexcellence.es


El vie., 25 oct. 2019 a las 20:17, juan manuel dias ()
escribió:

> Hola,
>
> Tengo un tabla de datos con pacientes asistidos, para los cuáles tengo
> variables como  dni, género, programa de atención etc. Hay pacientes que
> atendieron en más de un programa por lo cuál se repiten en la tabla. Lo que
> quiero es poder contar con una matriz que me permita identificar la
> cantidad de pacientes que coinciden entre programas.
>
> Va un ejemplo:
>
> [image: image.png]
> Intenté de varias formas pero no consigo hacerlo.
>
> Muchas gracias!
>
> Saludos.
> ___
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> R-help-es@r-project.org
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>


-- 
Saludos,
Carlos Ortega
www.qualityexcellence.es
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Re: [R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread Deepayan Sarkar
On Sat, Oct 26, 2019 at 8:22 PM Bert Gunter  wrote:
>
> No. relevel() only changes the order in one specific way. Use `levels<-`()
> to reorder in a general way:
>
> > z <- factor(rep(letters[3:1],2))
> > z
> [1] c b a c b a
> Levels: a b c
> > z <-relevel(z, ref = "c")
> > z
> [1] c b a c b a
> Levels: c a b
> > levels(z)<- c("c","b","a")
> > z
> [1] c a b c a b
> Levels: c b a

No, that changes the data, not just the order of the levels; "b" and
"a" have been switched.

You need some version of

> factor(z, levels = c("c", "a", "b"))
[1] c b a c b a

See also ?reorder for a useful way of reordering the levels,
especially in plots.

-Deepayan

> Cheers,
> Bert
>
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along and
> sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Sat, Oct 26, 2019 at 6:09 AM Patrick (Malone Quantitative) <
> mal...@malonequantitative.com> wrote:
>
> > Try using relevel() to organize the categories in your factor in the
> > desired order. You may need to use relevel(as.factor()) .
> >
> > On Sat, Oct 26, 2019 at 6:51 AM April Ettington
> >  wrote:
> > >
> > > Hi,
> > >
> > > When I use ggpubr with an x-axis utilizing descriptive categories (eg.
> > bar
> > > chart for different colors of car), it sorts all of the labels
> > > alphabetically.  Is there a way to change this so it shows in the order I
> > > want?
> > >
> > > Thanks,
> > >
> > > April
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > __
> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> > http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> > http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
> [[alternative HTML version deleted]]
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

__
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Re: [R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread Bert Gunter
No. relevel() only changes the order in one specific way. Use `levels<-`()
to reorder in a general way:

> z <- factor(rep(letters[3:1],2))
> z
[1] c b a c b a
Levels: a b c
> z <-relevel(z, ref = "c")
> z
[1] c b a c b a
Levels: c a b
> levels(z)<- c("c","b","a")
> z
[1] c a b c a b
Levels: c b a

Cheers,
Bert

Bert Gunter

"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Sat, Oct 26, 2019 at 6:09 AM Patrick (Malone Quantitative) <
mal...@malonequantitative.com> wrote:

> Try using relevel() to organize the categories in your factor in the
> desired order. You may need to use relevel(as.factor()) .
>
> On Sat, Oct 26, 2019 at 6:51 AM April Ettington
>  wrote:
> >
> > Hi,
> >
> > When I use ggpubr with an x-axis utilizing descriptive categories (eg.
> bar
> > chart for different colors of car), it sorts all of the labels
> > alphabetically.  Is there a way to change this so it shows in the order I
> > want?
> >
> > Thanks,
> >
> > April
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

[[alternative HTML version deleted]]

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Re: [R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread Patrick (Malone Quantitative)
Try using relevel() to organize the categories in your factor in the
desired order. You may need to use relevel(as.factor()) .

On Sat, Oct 26, 2019 at 6:51 AM April Ettington
 wrote:
>
> Hi,
>
> When I use ggpubr with an x-axis utilizing descriptive categories (eg. bar
> chart for different colors of car), it sorts all of the labels
> alphabetically.  Is there a way to change this so it shows in the order I
> want?
>
> Thanks,
>
> April
>
> [[alternative HTML version deleted]]
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

__
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[R] ggpubr: order of non-numeric x-axis items

2019-10-26 Thread April Ettington
Hi,

When I use ggpubr with an x-axis utilizing descriptive categories (eg. bar
chart for different colors of car), it sorts all of the labels
alphabetically.  Is there a way to change this so it shows in the order I
want?

Thanks,

April

[[alternative HTML version deleted]]

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Re: [R] Matching Values issue

2019-10-26 Thread Rui Barradas

Hello,

That's a floating-point issue.
See FAQ 7.31.
See also [1], [2] and the links therein.

[1] 
https://stackoverflow.com/questions/9508518/why-are-these-numbers-not-equal

[2] https://stackoverflow.com/questions/588004/is-floating-point-math-broken


Hope this helps,

Rui Barradas

Às 10:00 de 25/10/19, Roberto Martinez Caballero escreveu:

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