Re: [R] 'par mfrow' and not filling horizontally
Hi! I think you've got already all useful solutions, but I usually just change mfrow to c(2,2). There is then free space left, but I usually edit my graphs in Illustrator anyway. Ivan Le 9/8/2010 21:01, (Ted Harding) a écrit : Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0- rnorm(50) ; Y0- rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding)ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ivan CALANDRA PhD Student University of Hamburg Biozentrum Grindel und Zoologisches Museum Abt. Säugetiere Martin-Luther-King-Platz 3 D-20146 Hamburg, GERMANY +49(0)40 42838 6231 ivan.calan...@uni-hamburg.de ** http://www.for771.uni-bonn.de http://webapp5.rrz.uni-hamburg.de/mammals/eng/mitarbeiter.php [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] 'par mfrow' and not filling horizontally
Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'par mfrow' and not filling horizontally
Look at the squishplot function in the TeachingDemos package. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.s...@imail.org 801.408.8111 -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- project.org] On Behalf Of Ted Harding Sent: Wednesday, September 08, 2010 1:01 PM To: r-h...@stat.math.ethz.ch Subject: [R] 'par mfrow' and not filling horizontally Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'par mfrow' and not filling horizontally
Try par(pty=s). Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of ted.hard...@manchester.ac.uk Sent: Wednesday, September 08, 2010 12:01 PM To: r-h...@stat.math.ethz.ch Subject: [R] 'par mfrow' and not filling horizontally Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'par mfrow' and not filling horizontally
On Sep 8, 2010, at 2:01 PM, Ted Harding wrote: Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. Ted, Try this: set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) # add pty = s par(mfrow=c(2, 1), mfg = c(1, 1), cex = 0.5, pty = s) plot(X0, Y0, pch = +, col = blue, xlim = c(-3, 3), ylim = c(-3, 3), xlab = X, ylab = Y, main = My Plot, asp = 1) par(mfg = c(2, 1)) plot(X0, Y0, pch = +, col = blue, xlim= c(-3, 3), ylim = c(-3, 3), xlab = X, ylab = Y, main = My Plot, asp = 1) See ?par and 'pty', which defaults to m. HTH, Marc Schwartz __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'par mfrow' and not filling horizontally
Ted: ?layout Is this close to what you want? layout(matrix(1:2, nrow=2),wid=1,heigh=c(1,1), resp= TRUE) set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) On Wed, Sep 8, 2010 at 12:01 PM, Ted Harding ted.hard...@manchester.ac.uk wrote: Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Bert Gunter Genentech Nonclinical Biostatistics 467-7374 http://devo.gene.com/groups/devo/depts/ncb/home.shtml __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'par mfrow' and not filling horizontally
On 08-Sep-10 19:16:15, Bert Gunter wrote:
Ted:
?layout
Is this close to what you want?
layout(matrix(1:2, nrow=2),wid=1,heigh=c(1,1), resp= TRUE)
set.seed(54321)
X0 - rnorm(50) ; Y0 - rnorm(50)
plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3),
xlab=X,ylab=Y,main=My Plot,asp=1)
plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3),
xlab=X,ylab=Y,main=My Plot,asp=1)
Thanks Greg, William, Marc Bert for the suggestions. It seems
that Bert's suggestion of 'layout' may work best for my real example
(the one I posted was a simple one). It is also necessary to add
par(pty=s).
Greg: I must study squishplot() -- it looks useful.
William, Marc: I had tried pty=s in my real example (I inadvertently
omitted it from the dummy example I posted), but it still did not
work -- see Case B of the real example below.
Anyway, here is an instance of the real problem. DISCLAIMER: This
is being done as an exploration of concept and does not necessarily
represent my true state of mind ...
## Code common to all approaches (Alterbative continuations A and B):
library(MASS)
M - 10 ; N - 2 ; plur - 's
set.seed(54321)
mu - (-3)+6*(0:(M-1))/(M-1)
mu - rep(mu, N) ## M evenly spaced on (-3,3)
Y - matrix(rnorm(M*N,mean=mu),ncol=N) ## N Y's for each mu
KDE - kde2d(x=mu, y=Y, h=2.5, n=100, lims=c(-5,5,-5,5,-5.0,5.0))
S.x - KDE$x ; S.y - KDE$y ; S.z - KDE$z
## For each value of Y in the KDE grid, find the mu with max KDE:
Mxs - numeric(100)
for(j in (1:100)){ Mxs[j] - S.x[which(S.z[,j]==max(S.z[,j]))] }
## A: Using Bert's 'layout' approach with pty=s as well:
layout(matrix(1:2, nrow=2),wid=1,height=c(1,1), resp=TRUE)
par(cex=0.5,pty=s)
plot(mu,Y,pch=+,col=blue,asp=1,xlim=c(-5,5),ylim=c(-5,5),
xlab=True mu, ylab=Sampled Y's,
main=paste(KDE for (mu,Y),
M, mu's, ,N, Y,plur, per mu,sep=))
contour(S.x, S.y, S.z, nlevels=7, drawlabels=FALSE, add=TRUE)
lines(S.x,S.y,col=green)
for(j in (1:100)){ Mxs[j] - S.x[which(S.z[,j]==max(S.z[,j]))] }
lines(Mxs,S.x,col=red)
plot(S.x[1:100],Mxs[1:100],asp=1,pch=+,col=red,
xlim=c(-5,5),ylim=c(-5,5),
xlab=Future Observed Y,ylab=MLE of mu by KDE,
main=MLE of mu by KDE for this Sim vs Future Y)
lines(c(-3,3),c(-3,3),col=green)
lines(c(-3,-3),c(-3,3)) ; lines(c( 3, 3),c(-3,3))
text(0,3.5,-- Range of True mu used --)
##C: Using par(pty=s) with par(mfrow) leaving out 'layout':
plot.new()
par(mfrow=c(2,1),mfg=c(1,1),cex=0.5,pty=s)
plot(mu,Y,pch=+,col=blue,asp=1,xlim=c(-5,5),ylim=c(-5,5),
xlab=True mu, ylab=Sampled Y's,pty=s,
main=paste(KDE for (mu,Y),
M, mu's, ,N, Y,plur, per mu,sep=))
contour(S.x, S.y, S.z, nlevels=7, drawlabels=FALSE, add=TRUE)
lines(S.x,S.y,col=green)
for(j in (1:100)){ Mxs[j] - S.x[which(S.z[,j]==max(S.z[,j]))] }
lines(Mxs,S.x,col=red)
par(mfg=c(2,1))
plot(S.x[1:100],Mxs[1:100],asp=1,pch=+,col=red,
xlim=c(-5,5),ylim=c(-5,5),
xlab=Future Observed Y,ylab=MLE of mu by KDE,
main=MLE of mu by KDE for this Sim vs Future Y)
lines(c(-3,3),c(-3,3),col=green)
lines(c(-3,-3),c(-3,3)) ; lines(c( 3, 3),c(-3,3))
text(0,3.5,-- Range of True mu used --)
#
Anyway, thanks! It has helped.
Ted.
E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk
Fax-to-email: +44 (0)870 094 0861
Date: 08-Sep-10 Time: 21:39:53
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Re: [R] 'par mfrow' and not filling horizontally
remove your asp=1 and try again to see if that is what you want. On Wed, Sep 8, 2010 at 3:01 PM, Ted Harding ted.hard...@manchester.ac.uk wrote: Greetings, Folks. I'd appreciate being shown the way out of this one! I've been round the documentation in ever-drecreasing circles, and along other paths, without stumbling on the answer. The background to the question can be exemplified by the example (no graphics window open to start with): set.seed(54321) X0 - rnorm(50) ; Y0 - rnorm(50) par(mfrow=c(2,1),mfg=c(1,1),cex=0.5) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) par(mfg=c(2,1)) plot(X0,Y0,pch=+,col=blue,xlim=c(-3,3),ylim=c(-3,3), xlab=X,ylab=Y,main=My Plot,asp=1) As you will see, both plots have been extended laterally to fill the plotting area horizontally, hence extend from approx X = -8 to approx X = +8 (on my X11 display), despite the xlim=c(-3,3); however, the ylim=c(-3,3) has been respected, as has asp=1. What I would like to see, independently of the shape of the graphics window, is a pair of square plots, each with X and Y ranging from -3 to 3, even if this leaves empty space in the graphics window on either side. Hints? With thanks, Ted. E-Mail: (Ted Harding) ted.hard...@manchester.ac.uk Fax-to-email: +44 (0)870 094 0861 Date: 08-Sep-10 Time: 20:01:19 -- XFMail -- __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Jim Holtman Cincinnati, OH +1 513 646 9390 What is the problem that you are trying to solve? __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
