[R] Rcmdr installation under Unbuntu installatiion errors

2010-07-06 Thread John Sorkin 
Unbuntu 10.04
R 2.10

I am trying to install Rcmdr and receive the following messages:

The downloaded packages are in
‘/tmp/RtmpzhjDZG/downloaded_packages’
Warning messages:
1: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'Rmpi' had non-zero exit status
2: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'rpvm' had non-zero exit status
3: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'rsprng' had non-zero exit status
4: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'tkrplot' had non-zero exit status
5: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'rgl' had non-zero exit status
6: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'RODBC' had non-zero exit status
7: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'shapes' had non-zero exit status
8: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'latentnet' had non-zero exit status
9: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'VIM' had non-zero exit status
10: In install.packages(Rcmdr, dependencies = TRUE) :
  installation of package 'statnet' had non-zero exit status

Do I need to be concerned? Do I need to take any action?

Thank you,
John 


John Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
Baltimore VA Medical Center GRECC,
University of Maryland School of Medicine Claude D. Pepper OAIC,
University of Maryland Clinical Nutrition Research Unit, and
Baltimore VA Center Stroke of Excellence

University of Maryland School of Medicine
Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524

(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
jsor...@grecc.umaryland.edu

Confidentiality Statement:
This email message, including any attachments, is for th...{{dropped:6}}

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and provide commented, minimal, self-contained, reproducible code.

Re: [R] Rcmdr installation under Unbuntu installatiion errors

2010-07-06 Thread Vojtěch Zeisek 
Hello,
1) Try Rkward, it is much more better,
2) You can install Rcmdr directly via r-cran-rcmdr (generaly, search r-cran-*; 
You can also add special repository, see http://cran.r-
project.org/bin/linux/ubuntu/) and/or
3) if You wish to install normal packages from source (that is IMHO what 
install.packages() does in Linux), You need development packages for R as well 
as kernel header, compiler for Fortran, C and so on. I do not know how are 
those packages named in Ubuntu, but it should be no problem to find it via 
Synaptics. But I'd prefer solution 2. :-)
Best regards,
Vojtěch Zeisek

Dne Út 6. července 2010 18:29:47 John Sorkin napsal(a):
 Unbuntu 10.04
 R 2.10
 
 I am trying to install Rcmdr and receive the following messages:
 
 The downloaded packages are in
 ‘/tmp/RtmpzhjDZG/downloaded_packages’
 Warning messages:
 1: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'Rmpi' had non-zero exit status
 2: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rpvm' had non-zero exit status
 3: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rsprng' had non-zero exit status
 4: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'tkrplot' had non-zero exit status
 5: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rgl' had non-zero exit status
 6: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'RODBC' had non-zero exit status
 7: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'shapes' had non-zero exit status
 8: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'latentnet' had non-zero exit status
 9: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'VIM' had non-zero exit status
 10: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'statnet' had non-zero exit status
 
 Do I need to be concerned? Do I need to take any action?
 
 Thank you,
 John
 
 
 John Sorkin M.D., Ph.D.
 Chief, Biostatistics and Informatics
 Baltimore VA Medical Center GRECC,
 University of Maryland School of Medicine Claude D. Pepper OAIC,
 University of Maryland Clinical Nutrition Research Unit, and
 Baltimore VA Center Stroke of Excellence
 
 University of Maryland School of Medicine
 Division of Gerontology
 Baltimore VA Medical Center
 10 North Greene Street
 GRECC (BT/18/GR)
 Baltimore, MD 21201-1524
 
 (Phone) 410-605-7119
 (Fax) 410-605-7913 (Please call phone number above prior to faxing)
 jsor...@grecc.umaryland.edu
 
 Confidentiality Statement:
 This email message, including any attachments, is for th...{{dropped:6}}
 
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
  http://www.R-project.org/posting-guide.html and provide commented,
  minimal, self-contained, reproducible code.
-- 
Vojtěch Zeisek

Department of Botany, Faculty of Science, Charles Uni., Prague, CZ
Institute of Botany, Academy of Science, Czech Republic
Community of the openSUSE GNU/Linux

https://www.natur.cuni.cz/faculty-en?set_language=en
http://www.ibot.cas.cz/?p=indexamp;site=en
http://www.opensuse.org/
http://web.natur.cuni.cz/~zeisek/


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R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] Rcmdr installation under Unbuntu installatiion errors

2010-07-06 Thread John Fox 
Dear John,

I see that you already got an answer suggesting that you install the Ubuntu 
Rcmdr package, or install the tools required to build R packages from source. 
If the packages shown below are the only ones that failed to install, then 
you're probably OK. Most are dependencies of dependencies. An exception is the 
rgl package, which is needed for 3D scatterplots.

I hope this helps,
 John


John Fox
Senator William McMaster 
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
web: socserv.mcmaster.ca/jfox


 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
 Behalf Of John Sorkin
 Sent: July-06-10 12:30 PM
 To: r-help@r-project.org
 Subject: [R] Rcmdr installation under Unbuntu installatiion errors
 
 Unbuntu 10.04
 R 2.10
 
 I am trying to install Rcmdr and receive the following messages:
 
 The downloaded packages are in
 ‘/tmp/RtmpzhjDZG/downloaded_packages’
 Warning messages:
 1: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'Rmpi' had non-zero exit status
 2: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rpvm' had non-zero exit status
 3: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rsprng' had non-zero exit status
 4: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'tkrplot' had non-zero exit status
 5: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rgl' had non-zero exit status
 6: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'RODBC' had non-zero exit status
 7: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'shapes' had non-zero exit status
 8: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'latentnet' had non-zero exit status
 9: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'VIM' had non-zero exit status
 10: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'statnet' had non-zero exit status
 
 Do I need to be concerned? Do I need to take any action?
 
 Thank you,
 John
 
 
 John Sorkin M.D., Ph.D.
 Chief, Biostatistics and Informatics
 Baltimore VA Medical Center GRECC,
 University of Maryland School of Medicine Claude D. Pepper OAIC,
 University of Maryland Clinical Nutrition Research Unit, and
 Baltimore VA Center Stroke of Excellence
 
 University of Maryland School of Medicine
 Division of Gerontology
 Baltimore VA Medical Center
 10 North Greene Street
 GRECC (BT/18/GR)
 Baltimore, MD 21201-1524
 
 (Phone) 410-605-7119
 (Fax) 410-605-7913 (Please call phone number above prior to faxing)
 jsor...@grecc.umaryland.edu
 
 Confidentiality Statement:
 This email message, including any attachments, is for th...{{dropped:6}}
 
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] Rcmdr installation under Unbuntu installatiion errors

2010-07-06 Thread stephen sefick 
for the build dependencies

sudo apt-get build-dep whatever

whatever=r-base etc.
hth,

Stephen Sefick

On Tue, Jul 6, 2010 at 3:44 PM, John Fox j...@mcmaster.ca wrote:
 Dear John,

 I see that you already got an answer suggesting that you install the Ubuntu 
 Rcmdr package, or install the tools required to build R packages from source. 
 If the packages shown below are the only ones that failed to install, then 
 you're probably OK. Most are dependencies of dependencies. An exception is 
 the rgl package, which is needed for 3D scatterplots.

 I hope this helps,
  John

 
 John Fox
 Senator William McMaster
  Professor of Social Statistics
 Department of Sociology
 McMaster University
 Hamilton, Ontario, Canada
 web: socserv.mcmaster.ca/jfox


 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
 Behalf Of John Sorkin
 Sent: July-06-10 12:30 PM
 To: r-help@r-project.org
 Subject: [R] Rcmdr installation under Unbuntu installatiion errors

 Unbuntu 10.04
 R 2.10

 I am trying to install Rcmdr and receive the following messages:

 The downloaded packages are in
     ‘/tmp/RtmpzhjDZG/downloaded_packages’
 Warning messages:
 1: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'Rmpi' had non-zero exit status
 2: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rpvm' had non-zero exit status
 3: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rsprng' had non-zero exit status
 4: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'tkrplot' had non-zero exit status
 5: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'rgl' had non-zero exit status
 6: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'RODBC' had non-zero exit status
 7: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'shapes' had non-zero exit status
 8: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'latentnet' had non-zero exit status
 9: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'VIM' had non-zero exit status
 10: In install.packages(Rcmdr, dependencies = TRUE) :
   installation of package 'statnet' had non-zero exit status

 Do I need to be concerned? Do I need to take any action?

 Thank you,
 John


 John Sorkin M.D., Ph.D.
 Chief, Biostatistics and Informatics
 Baltimore VA Medical Center GRECC,
 University of Maryland School of Medicine Claude D. Pepper OAIC,
 University of Maryland Clinical Nutrition Research Unit, and
 Baltimore VA Center Stroke of Excellence

 University of Maryland School of Medicine
 Division of Gerontology
 Baltimore VA Medical Center
 10 North Greene Street
 GRECC (BT/18/GR)
 Baltimore, MD 21201-1524

 (Phone) 410-605-7119
 (Fax) 410-605-7913 (Please call phone number above prior to faxing)
 jsor...@grecc.umaryland.edu

 Confidentiality Statement:
 This email message, including any attachments, is for th...{{dropped:6}}

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.




-- 
Stephen Sefick

| Auburn University   |
| Department of Biological Sciences   |
| 331 Funchess Hall  |
| Auburn, Alabama   |
| 36849|
|___|
| sas0...@auburn.edu |
| http://www.auburn.edu/~sas0025 |
|___|

Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods.  We are mammals, and have not exhausted the
annoying little problems of being mammals.

-K. Mullis

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.