Re: [R] gfortran command not found?
Hi Alon, It works for me. According to YAST I got libgfortran4.3, gcc-43fortran and gcc-fortran installed Kees Marc Schwartz wrote: On Jun 11, 2009, at 12:34 PM, Alon Ben-Ari wrote: Hello, I have openSUSE 11.1 Trying to install randomForest as SU after invoking R install.packages(randomForest) and I get this * Installing *source* package ‘randomForest’ ... ** libs gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include -fpic -O2 -c classTree.c -o classTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include -fpic -O2 -c regTree.c -o regTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include -fpic -O2 -c regrf.c -o regrf.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include -fpic -O2 -c rf.c -o rf.o gfortran -fpic -O2 -c rfsub.f -o rfsub.o make: gfortran: Command not found make: *** [rfsub.o] Error 127 ERROR: compilation failed for package ‘randomForest’ * Removing ‘/usr/lib/R/library/randomForest’ The downloaded packages are in ‘/tmp/RtmpLEyfgR/downloaded_packages’ Updating HTML index of packages in '.Library' Warning message: In install.packages(randomForest) : installation of package 'randomForest' had non-zero exit status I checked that I have th fortran library S | Name | Summary | Type --+---+--+ i | libgfortran41 | The GNU Fortran Compiler Runtime Library | package i | libgfortran43 | The GNU Fortran Compiler Runtime Library | package Any ideas how to solve this impass? I have not worked on SUSE, but check to see where gfortran is located: $ which gfortran and be sure that it returns the path to the executable and that the path to it is in your $PATH. You might also want to review: http://cran.r-project.org/doc/manuals/R-admin.html#Using-FORTRAN HTH, Marc Schwartz __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] gfortran command not found?
Hello, I have openSUSE 11.1 Trying to install randomForest as SU after invoking R install.packages(randomForest) and I get this * Installing *source* package randomForest ... ** libs gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic -O2 -c classTree.c -o classTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic -O2 -c regTree.c -o regTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic -O2 -c regrf.c -o regrf.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic -O2 -c rf.c -o rf.o gfortran -fpic -O2 -c rfsub.f -o rfsub.o make: gfortran: Command not found make: *** [rfsub.o] Error 127 ERROR: compilation failed for package randomForest * Removing /usr/lib/R/library/randomForest The downloaded packages are in /tmp/RtmpLEyfgR/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.packages(randomForest) : installation of package 'randomForest' had non-zero exit status I checked that I have th fortran library S | Name | Summary | Type --+---+--+ i | libgfortran41 | The GNU Fortran Compiler Runtime Library | package i | libgfortran43 | The GNU Fortran Compiler Runtime Library | package Any ideas how to solve this impass? Alon Ben-Ari, MD Dept Of Anesthesiology. University of Pittsburgh [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] gfortran command not found?
On Jun 11, 2009, at 12:34 PM, Alon Ben-Ari wrote: Hello, I have openSUSE 11.1 Trying to install randomForest as SU after invoking R install.packages(randomForest) and I get this * Installing *source* package randomForest ... ** libs gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic - O2 -c classTree.c -o classTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic - O2 -c regTree.c -o regTree.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic - O2 -c regrf.c -o regrf.o gcc -std=gnu99 -I/usr/lib/R/include -I/usr/local/include-fpic - O2 -c rf.c -o rf.o gfortran -fpic -O2 -c rfsub.f -o rfsub.o make: gfortran: Command not found make: *** [rfsub.o] Error 127 ERROR: compilation failed for package randomForest * Removing /usr/lib/R/library/randomForest The downloaded packages are in /tmp/RtmpLEyfgR/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.packages(randomForest) : installation of package 'randomForest' had non-zero exit status I checked that I have th fortran library S | Name | Summary | Type --+---+--+ i | libgfortran41 | The GNU Fortran Compiler Runtime Library | package i | libgfortran43 | The GNU Fortran Compiler Runtime Library | package Any ideas how to solve this impass? I have not worked on SUSE, but check to see where gfortran is located: $ which gfortran and be sure that it returns the path to the executable and that the path to it is in your $PATH. You might also want to review: http://cran.r-project.org/doc/manuals/R-admin.html#Using-FORTRAN HTH, Marc Schwartz __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
