Re: [R] memory profiling
Using: summaryRprof(memory=both) did the trick, thank you. I had not been using that setting when calling summaryRprof. Thanks, Patrick 2010/11/20 Uwe Ligges lig...@statistik.tu-dortmund.de On 19.11.2010 21:48, Patrick Leyshock wrote: I'm trying to configure Version 2.12.0 or R to do memory profiling. I've reconfigured the code: % ./compile --enable-memory-profiling=YES and verified that it's configured correctly by examining the output. I then rebuild R: % make Then I fire up R and run a script, using Rprof with the memory-profiling switch set to TRUE: Rprof(output, memory.profiling=TRUE); # a bunch of R code Rprof(NULL); Wen I do summaryRprof(memory=both) I see an additional column ... but since you have not said what you tried exactly, we cannot help very much. Uwe Ligges When I examine the output, however, using either R CMD Rprof from the shell, or summaryRprof from within R, the output I see is identical to the output I got when I ran R BEFORE I recompiled with memory profiling enabled. Anyone see something that I'm missing? Thanks, Patrick [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] memory profiling
Using: summaryRprof(memory=both) did the trick, thank you. I had not been using that setting when calling summaryRprof. Thanks, Patrick 2010/11/20 Uwe Ligges lig...@statistik.tu-dortmund.de On 19.11.2010 21:48, Patrick Leyshock wrote: I'm trying to configure Version 2.12.0 or R to do memory profiling. I've reconfigured the code: % ./compile --enable-memory-profiling=YES and verified that it's configured correctly by examining the output. I then rebuild R: % make Then I fire up R and run a script, using Rprof with the memory-profiling switch set to TRUE: Rprof(output, memory.profiling=TRUE); # a bunch of R code Rprof(NULL); Wen I do summaryRprof(memory=both) I see an additional column ... but since you have not said what you tried exactly, we cannot help very much. Uwe Ligges When I examine the output, however, using either R CMD Rprof from the shell, or summaryRprof from within R, the output I see is identical to the output I got when I ran R BEFORE I recompiled with memory profiling enabled. Anyone see something that I'm missing? Thanks, Patrick [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] memory profiling
On 19.11.2010 21:48, Patrick Leyshock wrote: I'm trying to configure Version 2.12.0 or R to do memory profiling. I've reconfigured the code: % ./compile --enable-memory-profiling=YES and verified that it's configured correctly by examining the output. I then rebuild R: % make Then I fire up R and run a script, using Rprof with the memory-profiling switch set to TRUE: Rprof(output, memory.profiling=TRUE); # a bunch of R code Rprof(NULL); Wen I do summaryRprof(memory=both) I see an additional column ... but since you have not said what you tried exactly, we cannot help very much. Uwe Ligges When I examine the output, however, using either R CMD Rprof from the shell, or summaryRprof from within R, the output I see is identical to the output I got when I ran R BEFORE I recompiled with memory profiling enabled. Anyone see something that I'm missing? Thanks, Patrick [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] memory profiling
I'm trying to configure Version 2.12.0 or R to do memory profiling. I've reconfigured the code: % ./compile --enable-memory-profiling=YES and verified that it's configured correctly by examining the output. I then rebuild R: % make Then I fire up R and run a script, using Rprof with the memory-profiling switch set to TRUE: Rprof(output, memory.profiling=TRUE); # a bunch of R code Rprof(NULL); When I examine the output, however, using either R CMD Rprof from the shell, or summaryRprof from within R, the output I see is identical to the output I got when I ran R BEFORE I recompiled with memory profiling enabled. Anyone see something that I'm missing? Thanks, Patrick [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
