Re: [R] Problem in installing packages on linux machine...
Hi, I am trying to install RSQLite package on my Fedora workstation. I tried to install other packages as well, but each time I got the same error messages saying compilation error and non zero exit status. Do I have to specify lib=? I never specified the library path before when I was using Fedora Core 6. Warning in install.packages(RSQLite) : argument 'lib' is missing: using '/usr/lib/R/library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/RSQLite_0.5-6.tar.gz' Content type 'application/x-gzip' length 710241 bytes opened URL == downloaded 693Kb gcc -std=gnu99 -shared -L/usr/local/lib -o RSQLite.so RS-DBI.o RS-SQLite.o sqlite-all.o -L/usr/lib/R/lib -lR /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libR.so when searching for -lR /usr/bin/ld: cannot find -lR collect2: ld returned 1 exit status make: *** [RSQLite.so] Error 1 chmod: cannot access `/usr/lib/R/library/RSQLite/libs/*': No such file or directory ERROR: compilation failed for package 'RSQLite' ** Removing '/usr/lib/R/library/RSQLite' The downloaded packages are in /tmp/RtmpHQ5Y7C/downloaded_packages Warning message: installation of package 'RSQLite' had non-zero exit status in: install.packages(RSQLite) I appreciate your help. Thank you very much Taka __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem in installing packages on linux machine...
Hi, Still got the same error message. I did su R when I got the error message for the first time. I have never seen this error message. I will be googling for solutions as well... Thank you. Quoting Henrique Dallazuanna [EMAIL PROTECTED]: Hi, try install packages whit 'sudo'. $sudo R -- Henrique Dallazuanna Curitiba-Paraná-Brasil 25° 25' 40 S 49° 16' 22 O On 08/09/2007, [EMAIL PROTECTED] [EMAIL PROTECTED] wrote: Hi, I am trying to install RSQLite package on my Fedora workstation. I tried to install other packages as well, but each time I got the same error messages saying compilation error and non zero exit status. Do I have to specify lib=? I never specified the library path before when I was using Fedora Core 6. Warning in install.packages(RSQLite) : argument 'lib' is missing: using '/usr/lib/R/library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/RSQLite_0.5-6.tar.gz' Content type 'application/x-gzip' length 710241 bytes opened URL == downloaded 693Kb gcc -std=gnu99 -shared -L/usr/local/lib -o RSQLite.so RS-DBI.o RS-SQLite.o sqlite-all.o -L/usr/lib/R/lib -lR /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libR.so when searching for -lR /usr/bin/ld: cannot find -lR collect2: ld returned 1 exit status make: *** [RSQLite.so] Error 1 chmod: cannot access `/usr/lib/R/library/RSQLite/libs/*': No such file or directory ERROR: compilation failed for package 'RSQLite' ** Removing '/usr/lib/R/library/RSQLite' The downloaded packages are in /tmp/RtmpHQ5Y7C/downloaded_packages Warning message: installation of package 'RSQLite' had non-zero exit status in: install.packages(RSQLite) I appreciate your help. Thank you very much Taka __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Takatsugu Kobayashi PhD Student Indiana University, Dept. Geography __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] problems in read.table
Dear R-users,
I have encountered the following problem every now and then. But I was
dealing with a very small dataset before, so it wasn't a problem (I
just edited the dataset in Openoffice speadsheet). This time I have to
deal with many large datasets containing commuting flow data. I
appreciate if anyone could give me a hint or clue to get out of this
problem.
I have a .dat file called 1081.dat: 1001 means Birmingham, AL.
I imported this .dat file using read.table like
tmp-read.table('CTPP3_ANSI/MPO3441_ctpp3_sumlv944.dat',header=T)
Then I got this error message:
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 9499 did not have 209 elements
Since I got an error message saying other rows did not have 209
elements, I added skip=c(205,9499,9294)) in hoping that R would take
care of this problem. But I got a similar error message:
tmp-read.table('CTPP3_ANSI/MPO3441_ctpp3_sumlv944.dat',header=T,skip=c(205,9499,9294))
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 9294 did not have 209 elements
In addition: Warning message:
the condition has length 1 and only the first element will be used
in: if (skip 0) readLines(file, skip)
Is there any way to let a R code to automatically skip problematic
rows? Thank you very much!
Taka
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] problems in read.table-Solved
Thank you very much for help. I am learning R every day
Taka
Quoting Peter Dalgaard [EMAIL PROTECTED]:
[EMAIL PROTECTED] wrote:
Dear R-users,
I have encountered the following problem every now and then. But I
was dealing with a very small dataset before, so it wasn't a problem
(I just edited the dataset in Openoffice speadsheet). This time I
have to deal with many large datasets containing commuting flow
data. I appreciate if anyone could give me a hint or clue to get out
of this problem.
I have a .dat file called 1081.dat: 1001 means Birmingham, AL.
I imported this .dat file using read.table like
tmp-read.table('CTPP3_ANSI/MPO3441_ctpp3_sumlv944.dat',header=T)
Then I got this error message:
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
na.strings, :
line 9499 did not have 209 elements
Since I got an error message saying other rows did not have 209
elements, I added skip=c(205,9499,9294)) in hoping that R would take
care of this problem. But I got a similar error message:
tmp-read.table('CTPP3_ANSI/MPO3441_ctpp3_sumlv944.dat',header=T,skip=c(205,9499,9294))
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
na.strings, :
line 9294 did not have 209 elements
In addition: Warning message:
the condition has length 1 and only the first element will be used
in: if (skip 0) readLines(file, skip)
Is there any way to let a R code to automatically skip problematic
rows? Thank you very much!
Skip is the NUMBER of rows to skip before reading. It has to be a
single number.
You can use fill and flush to read lines with too few or too many
elements, but it might be better to investigate the cause of the
problem. What are in those lines? Quote and comment characters are
common culprits.
Taka
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
Takatsugu Kobayashi
PhD Student
Indiana University, Dept. Geography
__
R-help@stat.math.ethz.ch mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] combining datasets by row
Rusers,
I am trying to append multiple .csv files of different dimensions (but
# of columns are the same for all .csv files). I do have .csv files
whose names are CA1.csv ~ CA100.csv. CA means california and 1 means
the first file. So what I have been doing (after googling how to append
by row multiple files) was:
cleanup_data-function(state,count)
{
out-matrix()
for (i in 1: count)
{
tmp-read.csv(paste(CTPP3/,state,i,.csv,sep=),header=F)
out-rbind(out,tmp)
}
write.csv(file.out,file='file_output.csv')
}
I got an error message:
cleanup_data('CA',7)
Error in match.names(clabs, names(xi)) : names do not match previous names
Which name is this error message referring to?
I decided to get out of Excel and Access trap.
Thank you very much
Taka
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] rJava help
Hi, I use Redhat Linux for R. Now I am trying to use the rJava library. I downloaded JRE beta 2 from Sun. I typed [EMAIL PROTECTED] R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0-beta2 Java home path : /usr/java/jre1.6.0 Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/lib:/usr/lib JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/lib/amd64 -L$(JAVA_HOME)/../lib/amd64 -L -L/usr/java/packages/lib/amd64 -L/lib -L/usr/lib -ljvm when I try to install rJava, it says configure: error: jni headers not found. Please make sure you have a proper JDK installed. ERROR: configuration failed for package 'rJava' ** Removing '/usr/lib64/R/library/rJava' The downloaded packages are in /tmp/Rtmp7RF5Qs/downloaded_packages Warning message: installation of package 'rJava' had non-zero exit status in: install.packages(rJava) How can I solve this? Thanks for help in advance. Taka __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Help for looping
Rusers:
I have tried to minimize computing times by taking advanage of
lapply(). My data is a 1000*30 matrix and the distance matrix was
created with dist(). What I am trying to do is to compute the standard
distances using the frequencies attached to the nearest negibors of n
reference zones. So I will have 1000 standard distances, and would like
to see the frequency distribution of the standard distances.
# Convert decimal degrees into UTM miles
x-(data[,1]-58277.194363)*0.000621
y-(data[,2]-4414486.03135)*0.000621
# Combine x y for computing distances
coords-cbind(x,y)
pts-length(data)
# Subset housing data and employment data
RES-data[,3:17]
EMP-data[,378:392]
# Combine all the subdata as D
D-cbind(coords,RES,EMP)
cases-ncol(D)-ncol(coords)
# Create a threshold bandwidth for defining the nearest neighbors
thrs-seq(0,35,by=1)
SDTAZ-rep(list(matrix(,nrow(D),length(thrs))),cases)
for (j in 1:nrow(D))
for (k in 1:length(thrs))
for (l in 1:cases)
{
{
{
SDTAZ[[l]][j,k]-
sqrt(
sum(
(D[as.vector(which(dis[j,]=thrs[k])),l+2]-D[j,l+2]-
min(D[as.vector(which(dis[j,]=thrs[k])),l+2]-D[j,l+2])+1)*
(
(dis[j,as.vector(which(dis[j,]=thrs[k]))])^2
)
)
/sum(D[as.vector(which(dis[j,]=thrs[k])),l+2]-D[j,l+2]-
min(D[as.vector(which(dis[j,]=thrs[k])),l+2]-D[j,l+2])+1)
)
}
}
}
I think that within this nested loop, I should use lapply() but I ended
up getting different values I appreciate if someone could kindly
help me.
Thank you very much.
Takatsugu Kobayashi
PhD Candidate
Indiana University, Dept. Geography
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] exporting graphics
Hi, This is a very fundamental question. I want to export graphical results so that I can place them in an openoffice document. I use Fedora 5. Can anyone help? Thanks in advance. Takatsugu Kobayashi PhD Student Indiana University, Dept. Geography __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
