[R-sig-phylo] Noob Questions
Greetings all, I am interested in learning more about how phylogenetic tree are produced and would like to find a few general review articles on the subject. Can anyone suggest some papers or source material? -- Thank You, Matt Curcio Dept. of Bioinformatics Worcester Polytechnic Inst. Worcester, MA matt.curcio...@gmail.com [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
[R-sig-phylo] Looking for Data Mining Tools
Greetings all, I am a new graduate student in bioinformatics and I am looking for some Data Mining tools and a little help. I am looking for a 7 week project that entails data mining but I am not familiar with the tools, much less the space. I was thinking about taking some DNA chip data from GEO dataset and using decision trees. I was told to look into NCBI tools but I have not found this specifically yet. Any suggestions would be welcomed, Matt PS. I am not sure if this is the appropriate forum but I do know it usually starts with a question. I would be happy if someone could steer me to the appropriate R forum for this type of work. -- Thank You, Matt Curcio Worcester Polytechnic Inst. Worcester, MA USA E: matt.curcio...@gmail.com [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
[R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Greetings all,, I received this error while using R version 2.15.1 and ape 3.0.11. Error in FI[i]:LA[i] : NA/NaN argument I have tried several approaches: ref = NC_000913.3 seq1 = read.GenBank(ref) Error in FI[i]:LA[i] : NA/NaN argument ref = read.csv(file=test2.csv, head=T) ref = str(ref) # Where test2.csv is in two rows 'data.frame': 1 obs. of 1 variable: $ seq: Factor w/ 1 level NC+AF8-000913: 1 seq2 = read.GenBank(ref) Error in FI[i]:LA[i] : NA/NaN argument I was wondering if someone could lend a hand based on their own experience. -- Thank You, Matt Curcio Bioinformatics Dept. Worcester Polytechnic Institute Worcester, MA, USA M: 401-316-5358 E: matt.curcio...@gmail.com [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
