Re: [R-sig-phylo] Tree Annotation

2012-01-20 Thread Todd Jones
Emmanuel and Christoph,
I am glad to hear that I am able to color the trees in R and that is
useful, but my main objective is to be able to export the tree with the
annotations so that I can import it in figtree and have figtree color my
tree.  I am working on this project for another person who wants to use
figtree.
Thanks,
Todd

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[R-sig-phylo] Tree Annotation

2012-01-19 Thread Todd Jones
Hello,
I am working on a project where I need to add annotation/comment data in
square brackets to my tree and export it in NEXUS format so it looks like
this:
0.9):0.6):0.6):0.8):0.5)*[!color=#-65536]*:1.3):0.7):1.0)
I need to do this so I can then import the tree into figtree and have the
branches of the tree be colored the way I specified them to be in R
(through the comments in the square brackets).  figtree colors branches
based on the color=#... tag specified in the square brackets.  So far, I
have been unable to figure out a way to accomplish this in R.  Is it
possible?
Thanks.

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