Re: [Rdkit-discuss] Suppress stdout and stderr in rdkit
Hi Paolo, Thanks a lot for your prompt reply. I ended up coding this: from rdkit import Chem from rdkit import RDLogger smart = '[#6]1(:[#6]:[#6]:[#6]2:[#6](:[#6]:1):[#6]:[#6]:[#6]:[#6]:2)-[#8,#6]' mol = Chem.MolFromSmarts(smart) lg = RDLogger.logger() lg.setLevel(RDLogger.CRITICAL) try: Chem.SanitizeMol(mol) except: print 'OK' Ciao, Gaetano On 02/18/2016 01:09 AM, Paolo Tosco wrote: > Dear Gaetano, > > you may try the following: > > from rdkit import rdBase > rdBase.DisableLog('rdApp.error') > > You may check the logging levels you wish to disable/enable in > rdkit/RDLogger.py, or use a wildcard such as 'rdApp.*' to affect all > levels at once. > > Best, > Paolo > > On 17/02/2016 23:54, Gaetano Calabro wrote: >> from rdkit import Chem >> >> smart = >> '[#6]1(:[#6]:[#6]:[#6]2:[#6](:[#6]:1):[#6]:[#6]:[#6]:[#6]:2)-[#8,#6]' >> >> mol = Chem.MolFromSmarts(smart) >> >> Chem.SanitizeMol(mol) > -- Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151=/4140 ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] Suppress stdout and stderr in rdkit
Dear Gaetano, you may try the following: from rdkit import rdBase rdBase.DisableLog('rdApp.error') You may check the logging levels you wish to disable/enable in rdkit/RDLogger.py, or use a wildcard such as 'rdApp.*' to affect all levels at once. Best, Paolo On 17/02/2016 23:54, Gaetano Calabro wrote: > from rdkit import Chem > > smart = '[#6]1(:[#6]:[#6]:[#6]2:[#6](:[#6]:1):[#6]:[#6]:[#6]:[#6]:2)-[#8,#6]' > > mol = Chem.MolFromSmarts(smart) > > Chem.SanitizeMol(mol) -- Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151=/4140 ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
[Rdkit-discuss] Suppress stdout and stderr in rdkit
Hi there, I wonder if there is an easy way to suppress the standard output and standard error from RDkit. For example: from rdkit import Chem smart = '[#6]1(:[#6]:[#6]:[#6]2:[#6](:[#6]:1):[#6]:[#6]:[#6]:[#6]:2)-[#8,#6]' mol = Chem.MolFromSmarts(smart) Chem.SanitizeMol(mol) This will produce the warning message: [15:52:25] Explicit valence for atom # 3 C, 5, is greater than permitted I would like to suppress this message. Is there any way to do it? Thanks, Gaetano -- Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151=/4140 ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss