Author: tlinnet Date: Fri Dec 6 18:11:32 2013 New Revision: 21845 URL: http://svn.gna.org/viewcvs/relax?rev=21845&view=rev Log: Added another systemtest for returning spins from a generic file.
Work in progress for Support Request #3044, (https://gna.org/support/index.php?3044) - Load spins from SPARKY list. Modified: trunk/test_suite/system_tests/peak_lists.py Modified: trunk/test_suite/system_tests/peak_lists.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=21845&r1=21844&r2=21845&view=diff ============================================================================== --- trunk/test_suite/system_tests/peak_lists.py (original) +++ trunk/test_suite/system_tests/peak_lists.py Fri Dec 6 18:11:32 2013 @@ -186,6 +186,32 @@ self.assertEqual(len(cdp.mol[0].res[4].spin), 1) self.assertEqual(cdp.mol[0].res[4].spin[0].num, None) self.assertEqual(cdp.mol[0].res[4].spin[0].name, None) + + + def test_read_spins_peak_list_generic_with_spin_name(self): + """Test the reading of spins with spin name in columns from a generic peak intensity list.""" + + # Read the peak spins. + self.interpreter.spectrum.read_spins(file='test.seq', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'peak_lists', mol_name_col=1, res_num_col=2, res_name_col=3, spin_num_col=4, spin_name_col=5) + + # Test some of the sequence. + self.assertEqual(len(cdp.mol), 1) + self.assertEqual(cdp.mol[0].name, 'protein') + self.assertEqual(len(cdp.mol[0].res), 10) + + # 1st residue. + self.assertEqual(cdp.mol[0].res[0].num, 10) + self.assertEqual(cdp.mol[0].res[0].name, 'L') + self.assertEqual(len(cdp.mol[0].res[0].spin), 1) + self.assertEqual(cdp.mol[0].res[0].spin[0].num, 10) + self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N') + + # 2nd residue. + self.assertEqual(cdp.mol[0].res[1].num, 6) + self.assertEqual(cdp.mol[0].res[1].name, 'V') + self.assertEqual(len(cdp.mol[0].res[1].spin), 1) + self.assertEqual(cdp.mol[0].res[1].spin[0].num, 6) + self.assertEqual(cdp.mol[0].res[1].spin[0].name, 'N') def test_read_spins_peak_list_nmrview(self): _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-commits mailing list relax-commits@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-commits
