[Wien] Invitation to connect on LinkedIn

2012-10-23 Thread Xu Zuo via LinkedIn
LinkedIn





Xu Zuo requested to add you as a connection on LinkedIn:
  

--

Saeid,

I'd like to add you to my professional network on LinkedIn.

- Xu

Accept invitation from Xu Zuo
http://www.linkedin.com/e/hkdd2o-h8mn6427-54/77q4aLF8a-dbNmmcGlp90DOvAVARfBOcUAZW3ymqWXObQhS/blk/I265023092_130/3wOtCVFbmdxnSVFbm8JrnpKqlZJrmZzbmNJpjRQnOpBtn9QfmhBt71BoSd1p65Lr6lOfP0PclYOej0Pcz0Rdz99bTcPqTB3dARGbPcPdPsTdzsMczALrCBxbOYWrSlI/eml-comm_invm-b-in_ac-inv28/?hs=falsetok=3G7IYIcvQdABs1

View profile of Xu Zuo
http://www.linkedin.com/e/hkdd2o-h8mn6427-54/rso/89295785/LpDg/name/130766967_I265023092_130/?hs=falsetok=2HsmNo_hAdABs1
--
You are receiving Invitation emails.


This email was intended for Saeid Jalali Asadabadi.
Learn why this is included: 
http://www.linkedin.com/e/hkdd2o-h8mn6427-54/plh/http%3A%2F%2Fhelp%2Elinkedin%2Ecom%2Fapp%2Fanswers%2Fdetail%2Fa_id%2F4788/-GXI/?hs=falsetok=0JKemIefwdABs1

(c) 2012, LinkedIn Corporation. 2029 Stierlin Ct, Mountain View, CA 94043, USA.


  
-- next part --
An HTML attachment was scrubbed...
URL: 
http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20121023/eb94565d/attachment.htm


[Wien] possible lapw1para bug?

2008-01-30 Thread Xu Zuo
Dear Colleagues,

I want to run wien2k_07.3 in mpi parallelization. The lapw0para is OK.
However, lapw1para stop with error.

My .machines file is as following:
.machines
#
1:node17.emlab
1:node13.emlab
lapw0:node17.emlab  node13.emlab
lapw1:node17.emlab  node13.emlab
lapw2:node17.emlab  node13.emlab
granularity:1
extrafine:1
-

The case.dayfile is as following:
case.dayfile
   lapw1  -up -p   (03:10:34) starting parallel lapw1 at Sat Jan 26
03:10:3
4 EST 2008
-  starting parallel LAPW1 jobs at Sat Jan 26 03:10:34 EST 2008
Sat Jan 26 03:10:34 EST 2008 - Setting up case case for parallel execution
Sat Jan 26 03:10:34 EST 2008 - of LAPW1
Sat Jan 26 03:10:34 EST 2008 -
running LAPW1 in parallel mode (using .machines)
Granularity set to 1
Extrafine set
0.083u 0.415s 0:00.43 113.9%0+0k 0+200io 0pf+0w
error: command   /home/opt/wien2k_AMD/lapw1para -up uplapw1.def   failed

   stop error
--

If I run /home/opt/wien2k_AMD/lapw1para -up uplapw1.def directly, the
stdout is following:
stdout of lapw1para
starting parallel lapw1 at Sat Jan 26 03:18:19 EST 2008
-  starting parallel LAPW1 jobs at Sat Jan 26 03:18:19 EST 2008
Sat Jan 26 03:18:19 EST 2008 - Setting up case case for parallel execution
Sat Jan 26 03:18:19 EST 2008 - of LAPW1
Sat Jan 26 03:18:19 EST 2008 -
running LAPW1 in parallel mode (using .machines)
Granularity set to 1
Extrafine set
@: Expression Syntax.
--

The last line seems to be the error message. I trace into the script
lapw1para and locate that the error occurs at following segment:
lapw1para
# modify weights
set i = 1
set sumn = 0
while ($i = $#weigh)
@ weigh[$i] *= $klist
@ weigh[$i] /= $sumw
@ weigh[$i] /= $granularity
if ($weigh[$i] == 0 ) then
@  weigh[$i] ++ # oops, we divided by too big a number
endif
@ sumn += $weigh[$i]
@ i ++
end


However, k-point parallelization is OK for lapw1. Is this a bug of
lapw1para? Or the .machines file is bad.

Best Regards,

Xu Zuo
-- next part --
An HTML attachment was scrubbed...
URL: 
http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20080130/ddd98d9f/attachment.html


[Wien] How to run lapw1 and lapw2 in mpi parallelization

2008-01-26 Thread Xu Zuo
Dear Colleagues,

I want to run wien2k_07.3 in mpi parallelization. The lapw0para is OK.
However, lapw1para stop with error.

My .machines file is as following:
.machines
#
1:node17.emlab
1:node13.emlab
lapw0:node17.emlab  node13.emlab
lapw1:node17.emlab  node13.emlab
lapw2:node17.emlab  node13.emlab
granularity:1
extrafine:1
-

The case.dayfile is as following:
case.dayfile
   lapw1  -up -p   (03:10:34) starting parallel lapw1 at Sat Jan 26
03:10:3
4 EST 2008
-  starting parallel LAPW1 jobs at Sat Jan 26 03:10:34 EST 2008
Sat Jan 26 03:10:34 EST 2008 - Setting up case case for parallel execution
Sat Jan 26 03:10:34 EST 2008 - of LAPW1
Sat Jan 26 03:10:34 EST 2008 -
running LAPW1 in parallel mode (using .machines)
Granularity set to 1
Extrafine set
0.083u 0.415s 0:00.43 113.9%0+0k 0+200io 0pf+0w
error: command   /home/opt/wien2k_AMD/lapw1para -up uplapw1.def   failed

   stop error
--

If I run /home/opt/wien2k_AMD/lapw1para -up uplapw1.def directly, the
stdout is following:
stdout of lapw1para
starting parallel lapw1 at Sat Jan 26 03:18:19 EST 2008
-  starting parallel LAPW1 jobs at Sat Jan 26 03:18:19 EST 2008
Sat Jan 26 03:18:19 EST 2008 - Setting up case case for parallel execution
Sat Jan 26 03:18:19 EST 2008 - of LAPW1
Sat Jan 26 03:18:19 EST 2008 -
running LAPW1 in parallel mode (using .machines)
Granularity set to 1
Extrafine set
@: Expression Syntax.
--

The last line seems to be the error message. I trace into the script
lapw1para and locate that the error occurs at following segment:
lapw1para
# modify weights
set i = 1
set sumn = 0
while ($i = $#weigh)
@ weigh[$i] *= $klist
@ weigh[$i] /= $sumw
@ weigh[$i] /= $granularity
if ($weigh[$i] == 0 ) then
@  weigh[$i] ++ # oops, we divided by too big a number
endif
@ sumn += $weigh[$i]
@ i ++
end


However, k-point parallelization is OK for lapw1.

I sincerely appreciate any reply.


Best regards,

Xu Zuo
-- next part --
An HTML attachment was scrubbed...
URL: 
http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20080126/dcb28f76/attachment.html