Hi Matteo,
You can get the traceback by running
rmarkdown::render("vignettes/Moonlight2R.Rmd")
Best regards,
Marcel
On 3/18/24 4:54 AM, Matteo Tiberti wrote:
> Hi Ramos,
>
> Thank you very much – this is really informative. Can I ask you how you
> got the tracback? I’m not really
Hi Matteo,
I was also able to reproduce on Bioc 3.18 on Windows with a traceback (see
below).
It may be that there are symbol clashes between parallel runs in the
`foreach:::.foreachGlobals` environment as described in
https://stackoverflow.com/a/67497500
Clearing the symbols in that
Hi Daniel,
Thanks for posting.
Hervé has asked on the R-devel mailing list:
https://stat.ethz.ch/pipermail/r-devel/2024-March/083265.html
I don't think you will have to do anything in your package.
Once fixed, the messages will go away.
Best regards,
Marcel
On 3/13/24 5:09 PM, Daniel
Hi Shraddha,
It looks like Michael has fixed this on GitHub:
https://github.com/lawremi/rtracklayer/commit/86407bbef2d02455053b7b7c96afe9c5ce6949e7
but the fix hasn't been pushed to Bioconductor devel.
In the meantime, you can install the GH version with
Hi Marek,
Thanks for pointing this out in release.
I have applied the patch to BiocCheck version 1.38.1.
FWIW, this issue was first opened here
https://github.com/Bioconductor/BiocCheck/issues/135
Best regards,
Marcel
On 1/25/24 9:24 AM, Marek Gierlinski (Staff) wrote:
> Yes, it must be this.
Hi Zhigang,
AFAICT, I don't see `crossprod` as an exported symbol in `MatrixExtra`.
> library(MatrixExtra)
> ls("package:MatrixExtra")
Did you mean Matrix:: or base:: crossprod?
Best regards,
Marcel
On 1/16/24 10:14 AM, Zhigang Li wrote:
Hi There,
It seems that the error says :
"
**
Hi Boyi,
This has been resolved in BiocCheck version 1.39.12.
https://github.com/Bioconductor/BiocCheck/issues/205
Best regards,
Marcel
On 1/10/24 2:53 PM, Boyi Guo wrote:
Hi,
I had the same problem (
https://bioconductor.org/spb_reports/tpSVG_buildreport_20240109095309.html).
* Checking
Hi Nick,
Git blame says the 'molecules' method and generic have been in
SpatialExperiment for at least 2 years.
It looks like the maintainers of MoleculeExperiment should import the molecules
generic and export only their method.
The other option is to have a separate package with only
Thank you for the fix.
I have updated the package.
Best,
Marcel
On 9/21/23 7:12 PM, Ali Sajid Imami wrote:
I'll take a look. I rely on KEGGREST a lot.
Regards,
Dr. Ali Sajid Imami
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