access to ThunderX ARM64 machine for those who want it

Hello, A Debian-friendly individual close to me offers access to his ThunderX machine to those who need it to develop Debian in some way. Access would be bare metal, though we could have different images to remotely boot from. Please contact me if you have any interest and I put you in touch.

Re: First day of online sprint

Hi Matúš, Am 18.02.21 um 22:57 schrieb Matus Kalas: > I'm personally too overloaded with other work at the moment :/ But if > you decide on an "everyone meets" timeslot e.g. on Saturday, I'll very > gladly join to say hi. I agree that this would be a good idea. Need to finish some real life work

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-bioc-gseabase, r-bioc-gsva

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 89773eaf by Steffen Möller at 2021-02-18T21:34:15+00:00 Update bio-dev - added r-bioc-gseabase, r-bioc-gsva - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

[Blends-commit] [Git][blends-team/med][master] Added r-bioc-{affxparser, oligo, oligoclasses, arrayexpress}

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: c62a1cd6 by Steffen Möller at 2021-02-18T17:53:31+00:00 Added r-bioc-{affxparser,oligo,oligoclasses,arrayexpress} - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio

Re: gabt-core and minia - still updatable for bullseye?

Am 16.02.21 um 19:27 schrieb Andreas Tille: > Hi Steffen, > > On Tue, Feb 16, 2021 at 07:09:18PM +0100, Steffen Möller wrote: >> I just backported a patch from upstream for gabt-core for which there is >> no release that allows minia to compile. Works. >> >> No

[med-svn] [Git][med-team/minia][master] 2 commits: Wording. Added myself to uploaders.

Steffen Möller pushed to branch master at Debian Med / minia Commits: 6b22ed14 by Steffen Moeller at 2021-02-16T16:14:36+01:00 Wording. Added myself to uploaders. - - - - - e30eaf4e by Steffen Moeller at 2021-02-16T19:33:20+01:00 Adjust dep to patched version of gatb - - - - - 4 changed

gabt-core and minia - still updatable for bullseye?

Hello, I just backported a patch from upstream for gabt-core for which there is no release that allows minia to compile. Works. Now - big question - shall I upload to unstable? This obviously missed the 12th. Our sprint is also a bit late in that respect :o/ $ apt-cache  rdepends

[med-svn] [Git][med-team/bioawk] Pushed new tag debian/1.0-1

Steffen Möller pushed new tag debian/1.0-1 at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/debian/1.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

Re: Failed build for seqan2 on i386

Am 12.02.21 um 22:56 schrieb Aaron M. Ucko: > Andreas Tille writes: > >> But other 32bit architectures like armel and armhf are passing[2]. So I >> fail to see why exactly i386 is failing. Is this possibly an effect of >> bug #917851? > Probably not; dropping the bug to a Bcc. Experimentation

[med-svn] [Git][med-team/bioawk] Pushed new tag upstream/1.0

Steffen Möller pushed new tag upstream/1.0 at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/upstream/1.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bioawk] Deleted tag upstream/1.0

Steffen Möller deleted tag upstream/1.0 at Debian Med / bioawk -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net

Re: bioawk - may I ask for a review?

Am 11.02.21 um 20:00 schrieb Juhani Numminen: > Nilesh Patra kirjoitti 11.2.2021 klo 19.38: >> Since soft freeze begins in just a few hours, should I upload this targeting >> unstable or experimental? >> I suppose unstable should be OK. But I'm not very well aware of what might >> be fine. So

[med-svn] [Git][med-team/bioawk] Pushed new branch pristine-tar

Steffen Möller pushed new branch pristine-tar at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/pristine-tar You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bioawk][upstream] New upstream version 1.0

Steffen Möller pushed to branch upstream at Debian Med / bioawk Commits: ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00 New upstream version 1.0 - - - - - 0 changed files: Changes: View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/commit

[med-svn] [Git][med-team/bioawk][master] 3 commits: Optics - thanks Juhani

Steffen Möller pushed to branch master at Debian Med / bioawk Commits: 58f9225a by Steffen Möller at 2021-02-12T02:45:25+01:00 Optics - thanks Juhani - - - - - ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00 New upstream version 1.0 - - - - - f8088b37 by Steffen Möller at 2021-02

Re: bioawk - may I ask for a review?

Am 11.02.21 um 17:23 schrieb Nilesh Patra: > Hi Steffen, > > On Thu, 11 Feb 2021 at 20:48, Steffen Möller <mailto:steffen_moel...@gmx.de>> wrote: > > Hello, > > https://salsa.debian.org/med-team/bioawk > <https://salsa.debian.org/med-te

bioawk - may I ask for a review?

Hello, https://salsa.debian.org/med-team/bioawk was once requested in a PM to me and I thought that this is rather reasonable to address. I  did not craft man pages and did not add a test, I know, I  should. I likely leave this for the sprint and if anyone of yours could comment on this in the

Re: Validating debian/upstream/metadata for debian-med projects

Very nice, thanks! Steffen Am 11.02.21 um 14:52 schrieb Andreas Tille: > On Thu, Feb 11, 2021 at 03:16:51PM +0200, Andrius Merkys wrote: >> Hello, >> >> Recent thread on debian-science@ [1] motivated me to look deeper into >> enforcing quality standards of debian/upstream/metadata files (a.k.a.

[med-svn] [Git][med-team/conda] Pushed new tag upstream/4.9.2+dfsg

Steffen Möller pushed new tag upstream/4.9.2+dfsg at Debian Med / conda -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/tree/upstream/4.9.2+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/conda][pristine-tar] pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / conda Commits: 0b91488c by Steffen Moeller at 2021-02-11T11:04:26+01:00 pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz - - - - - 2 changed files: - + conda_4.9.2+dfsg.orig.tar.xz.delta - + conda_4.9.2+dfsg.orig.tar.xz.id

[med-svn] [Git][med-team/conda][master] 3 commits: New upstream version 4.9.2+dfsg

Steffen Möller pushed to branch master at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - bf91e4d6 by Steffen Moeller at 2021-02-11T11:04:27+01:00 Update upstream source from tag upstream/4.9.2+dfsg Update

[med-svn] [Git][med-team/conda][upstream] New upstream version 4.9.2+dfsg

Steffen Möller pushed to branch upstream at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - 29 changed files: - .cla-signers - .gitattributes - + .github/workflows/ci.yml - CHANGELOG.md - README.rst

[med-svn] [Git][med-team/conda][master] New upstream version.

Steffen Möller pushed to branch master at Debian Med / conda Commits: 6348f41f by Steffen Moeller at 2021-02-11T11:01:12+01:00 New upstream version. - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog

[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.2.6.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / bcbio Commits: 30dab8f6 by Steffen Moeller at 2021-02-10T16:25:03+01:00 pristine-tar data for bcbio_1.2.6.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.2.6.orig.tar.gz.delta - + bcbio_1.2.6.orig.tar.gz.id Changes

[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.6

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 5c8848ab by Steffen Moeller at 2021-02-10T16:24:07+01:00 New upstream version 1.2.6 - - - - - a4e8977a by Steffen Moeller at 2021-02-10T16:25:03+01:00 Update upstream source from tag upstream/1.2.6 Update to upstream

Re: Making Debian available - Testing iso download

Am 05.02.21 um 18:50 schrieb Geert Stappers: > On Fri, Feb 05, 2021 at 04:21:42PM +, Paul Sutton wrote: >> Would it be possible to make it easier to find the ISO for the next release > It is work in progress and the process is called "Doing a release". The reply was kind of funny but please

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Re: Bug#981113: ITP: root -- open-source data analysis framework

Am 26.01.21 um 16:59 schrieb Christoph Biedl: > Julien Cristau wrote... > >> On Tue, Jan 26, 2021 at 04:34:14PM +0100, Stephan Lachnit wrote: >>> * Package name: root >> [...] >>> I want to maintain ROOT in the science team. ROOT was already in Debian as >>> `root-system` [1], but hasn't

[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.5

Steffen Möller pushed to branch upstream at Debian Med / bcbio Commits: 1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00 New upstream version 1.2.5 - - - - - 30 changed files: - HISTORY.md - MANIFEST.in - README.md - bcbio/bam/__init__.py - bcbio/bam/cram.py - bcbio/chipseq

[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.5

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00 New upstream version 1.2.5 - - - - - 17c33c5a by Steffen Moeller at 2021-01-26T13:54:36+01:00 Update upstream source from tag upstream/1.2.5 Update to upstream

[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.2.5.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / bcbio Commits: 163bda1e by Steffen Moeller at 2021-01-26T13:54:36+01:00 pristine-tar data for bcbio_1.2.5.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.2.5.orig.tar.gz.delta - + bcbio_1.2.5.orig.tar.gz.id Changes

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 419f39f8 by Steffen Möller at 2021-01-26T12:51:35+00:00 Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev - - - - - 1 changed file: - tasks/bio-dev Changes

Bug#980972: xxsds-dynamic: Changelog entry missing trailer line

Thank you, Logan. I just fixed that and uploaded. Nothing new from upstream. Steffen

Bug#980972: xxsds-dynamic: Changelog entry missing trailer line

Thank you, Logan. I just fixed that and uploaded. Nothing new from upstream. Steffen

[med-svn] [Git][med-team/xxsds-dynamic][master] 2 commits: Fix for resubmission

Steffen Möller pushed to branch master at Debian Med / xxsds-dynamic Commits: dd142aa9 by Steffen Möller at 2020-09-13T19:48:03+02:00 Fix for resubmission - - - - - 79ff5f4c by Steffen Möller at 2021-01-26T12:34:25+01:00 Fixing #980972 on missing changelog trailer - - - - - 2 changed files

Re: Should we offer Debian Med workflow-containers?

Dear Olivier, dear Yaroslav, dear Alex, Thank you all for your kind and constructive replies - as expected :o) Am 18.01.21 um 12:30 schrieb olivier sallou: > On Sun, 2021-01-17 at 16:42 +0100, Steffen Möller wrote: >> Hello, >> >> Our HPC environment does not offer Do

Should we offer Debian Med workflow-containers?

Hello, Our HPC environment does not offer Docker, but Singularity (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) is supported. I thought I should give it a shot. Is anybody using this already on this list? Best, Steffen

Re: [med-svn] [Git][med-team/q2-taxa][upstream] New upstream version 2020.11.0+dfsg

Thank you for this, Nilesh! Am 13.01.21 um 16:46 schrieb Nilesh Patra: > GitLab > > > Nilesh Patra pushed to branch upstream at Debian Med / q2-taxa > > > ike to receive fewer emails, you can adjust your notification settings. > >

done Re: [RFS] socket++

Thanks! Am 10.01.21 um 12:53 schrieb Nilesh Patra: > dcut dm --uid npatra...@gmail.com --allow > socket++

Spreadsheet - added another tab "Synthetic Biology"

https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1391447257 This is not directly relevant to the pandemic. Better: This is not directly relevant to the pandemic, yet. Please dump reference of software that comes to your mind and we then prioritize this

Re: Spende via Banküberweisung

Am 07.01.21 um 17:23 schrieb Pierre-Elliott Bécue: > Le mercredi 30 décembre 2020 à 17:06:01+0100, Steffen Möller a écrit : >> This is a question about how to donate to Debian from a German-speaking >> counry while keeping fees to a minimum. I think I can answer that. >>

done Re: [RFS] libmiglayout-java

Thanks! Am 31.12.20 um 18:47 schrieb Pierre Gruet: > dcut dm --uid "Pierre Gruet" --allow libmiglayout-java

Re: Spende via Banküberweisung

eine Banküberweisung an Debian-France an.  Deren Bankverbindung steht auf https://france.debian.net/soutenir/#compte . Mit freundlichen Grüßen und besten Wünschen für 2021 Steffen Möller Am 30.12.20 um 16:28 schrieb temp0...@posteo.de: > Sehr geehrte Damen und Herren, > > ich würde ge

Done Re: [RFS] apertium-cy-en

I suggest you add a note in d/changelog that this team-upload fixes the migration to testing. And if it builds for you then close the bug with this upload. Best, Steffen Am 24.12.20 um 13:47 schrieb Nilesh Patra: > Hi, > > Currently apertium-cy-en seems to be blocking apertium's testing >

[med-svn] [Git][med-team/augustus][upstream] New upstream version 3.4.0+dfsg

Steffen Möller pushed to branch upstream at Debian Med / augustus Commits: d6d05ec1 by Steffen Moeller at 2020-12-22T17:56:24+01:00 New upstream version 3.4.0+dfsg - - - - - 30 changed files: - + .dockerignore - + .github/workflows/examples_test.yml - + .github/workflows

[med-svn] [Git][med-team/augustus][master] 8 commits: routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / augustus Commits: 76f4e72d by Steffen Moeller at 2020-12-22T17:56:13+01:00 routine-update: New upstream version - - - - - d6d05ec1 by Steffen Moeller at 2020-12-22T17:56:24+01:00 New upstream version 3.4.0+dfsg - - - - - 95fbccb4

[med-svn] [Git][med-team/augustus][pristine-tar] pristine-tar data for augustus_3.4.0+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / augustus Commits: 5834e945 by Steffen Moeller at 2020-12-22T18:02:17+01:00 pristine-tar data for augustus_3.4.0+dfsg.orig.tar.xz - - - - - 2 changed files: - + augustus_3.4.0+dfsg.orig.tar.xz.delta - + augustus_3.4.0

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag upstream/2020.11.1+dfsg

Steffen Möller pushed new tag upstream/2020.11.1+dfsg at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/upstream/2020.11.1+dfsg You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag debian/2020.11.1+dfsg-1

Steffen Möller pushed new tag debian/2020.11.1+dfsg-1 at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/debian/2020.11.1+dfsg-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table][upstream] New upstream version 2020.11.1+dfsg

Steffen Möller pushed to branch upstream at Debian Med / q2-feature-table Commits: cc3249d9 by Steffen Moeller at 2020-12-19T20:56:40+01:00 New upstream version 2020.11.1+dfsg - - - - - 1 changed file: - q2_feature_table/_version.py Changes

[med-svn] [Git][med-team/q2-feature-table][pristine-tar] pristine-tar data for q2-feature-table_2020.11.1+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-feature-table Commits: 0d22ad6d by Steffen Moeller at 2020-12-19T20:56:40+01:00 pristine-tar data for q2-feature-table_2020.11.1+dfsg.orig.tar.xz - - - - - 2 changed files: - + q2-feature-table_2020.11.1+dfsg.orig.tar.xz.delta

[med-svn] [Git][med-team/q2-feature-table][master] 5 commits: routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / q2-feature-table Commits: 193e3948 by Steffen Moeller at 2020-12-19T20:56:39+01:00 routine-update: New upstream version - - - - - cc3249d9 by Steffen Moeller at 2020-12-19T20:56:40+01:00 New upstream version 2020.11.1+dfsg

Re: RFS: robot-testing-framework/2.0.1-1 [ITP] -- Robot Testing Framework

@Nilesh, if you can help out with a Nilesh-typical review then I happily sponsor. Best, Steffen Am 15.12.20 um 09:57 schrieb Nilesh Patra: Hi Daniele On Tue, 15 Dec, 2020, 2:14 pm Daniele E. Domenichelli, mailto:ddomeniche...@drdanz.it>> wrote: Any other comment on this package?

[med-svn] [Git][med-team/pigx-scrnaseq][pristine-tar] pristine-tar data for pigx-scrnaseq_1.1.7+ds.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / pigx-scrnaseq Commits: e07cb06c by Steffen Moeller at 2020-12-14T00:08:11+01:00 pristine-tar data for pigx-scrnaseq_1.1.7+ds.orig.tar.xz - - - - - 2 changed files: - + pigx-scrnaseq_1.1.7+ds.orig.tar.xz.delta - + pigx

[med-svn] [Git][med-team/pigx-scrnaseq][master] routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / pigx-scrnaseq Commits: 362f4910 by Steffen Moeller at 2020-12-14T00:04:25+01:00 routine-update: New upstream version - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/bcbio][master] TL;DR for d/TODO

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: a48982aa by Steffen Moeller at 2020-12-13T15:24:43+01:00 TL;DR for d/TODO - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO

[med-svn] [Git][med-team/sepp] Pushed new tag debian/4.3.10+dfsg-4

Steffen Möller pushed new tag debian/4.3.10+dfsg-4 at Debian Med / sepp -- View it on GitLab: https://salsa.debian.org/med-team/sepp/-/tree/debian/4.3.10+dfsg-4 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/sepp][master] Further refinement

Steffen Möller pushed to branch master at Debian Med / sepp Commits: 5fd4cab3 by Steffen Moeller at 2020-12-12T23:29:25+01:00 Further refinement - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/using_python3_interpreter.patch - debian/rules Changes

[med-svn] [Git][med-team/q2-fragment-insertion][master] 2 commits: Refinement of d/control

Steffen Möller pushed to branch master at Debian Med / q2-fragment-insertion Commits: 93e76b75 by Steffen Möller at 2020-12-12T15:04:38+01:00 Refinement of d/control - - - - - 3ebeb983 by Steffen Möller at 2020-12-13T00:36:37+01:00 runtime test will fail also with run-sepp.sh in place

[med-svn] [Git][med-team/sepp][master] Added sepp.install that was omitted from -3

Steffen Möller pushed to branch master at Debian Med / sepp Commits: fbee3df9 by Steffen Moeller at 2020-12-12T19:41:35+01:00 Added sepp.install that was omitted from -3 - - - - - 2 changed files: - debian/changelog - + debian/sepp.install Changes

[med-svn] [Git][med-team/sepp] Pushed new tag debian/4.3.10+dfsg-3

Steffen Möller pushed new tag debian/4.3.10+dfsg-3 at Debian Med / sepp -- View it on GitLab: https://salsa.debian.org/med-team/sepp/-/tree/debian/4.3.10+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/sepp][master] Upload of -3

Steffen Möller pushed to branch master at Debian Med / sepp Commits: 8e5b96eb by Steffen Moeller at 2020-12-12T14:57:54+01:00 Upload of -3 - - - - - 2 changed files: - debian/changelog - debian/upstream/metadata Changes: = debian/changelog

done Re: [RFS] python-pyfaidx

Thanks! Am 12.12.20 um 14:05 schrieb Nilesh Patra: dcut dm --uid npatra...@gmail.com --allow python-pyfaidx

[med-svn] [Git][med-team/sepp][master] Also redistributing run-sepp.sh for q2-fragment-insertion

Steffen Möller pushed to branch master at Debian Med / sepp Commits: d5602816 by Steffen Moeller at 2020-12-12T01:26:10+01:00 Also redistributing run-sepp.sh for q2-fragment-insertion - - - - - 3 changed files: - debian/changelog - debian/control - debian/sepp.lintian-overrides Changes

Re: some bioconductor packages up for peer review

Am 09.12.20 um 11:51 schrieb Andreas Tille: On Tue, Dec 08, 2020 at 02:47:57PM +0100, Steffen Möller wrote: a series of packages on https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 somehow does not seem to have gone anywhere. I just

[med-svn] [Git][med-team/q2-fragment-insertion][master] Added helper script, added runtim deps

Steffen Möller pushed to branch master at Debian Med / q2-fragment-insertion Commits: 8281fea2 by Steffen Möller at 2020-12-11T01:36:33+01:00 Added helper script, added runtim deps - - - - - 3 changed files: - debian/control - + debian/q2-fragment-insertion.dirs - + debian/q2-fragment

[med-svn] [Git][med-team/q2-dada2][master] Update control - extended description.

Steffen Möller pushed to branch master at Debian Med / q2-dada2 Commits: a20f2431 by Steffen Möller at 2020-12-08T23:49:25+00:00 Update control - extended description. - - - - - 1 changed file: - debian/control Changes: = debian/control

q2-dada2 added Re: some bioconductor packages up for peer review

On 08.12.20 14:47, Steffen Möller wrote: > Hello, > > a series of packages on > > https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 > > somehow does not seem to have gone anywhere. I just added > r-bioc-gseabase and

done Re: [RFS] kleborate

Thanks! On 08.12.20 20:59, Nilesh Patra wrote: > > dcut dm --uid npatra...@gmail.com --allow > kleborate

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag debian/2020.11.1-1

Steffen Möller pushed new tag debian/2020.11.1-1 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/debian/2020.11.1-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag upstream/2020.11.1

Steffen Möller pushed new tag upstream/2020.11.1 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/upstream/2020.11.1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt][upstream] New upstream version 2020.11.1

Steffen Möller pushed to branch upstream at Debian Med / q2-cutadapt Commits: 96109dc2 by Steffen Moeller at 2020-12-08T18:32:19+01:00 New upstream version 2020.11.1 - - - - - 1 changed file: - q2_cutadapt/_version.py Changes: = q2_cutadapt/_version.py

[med-svn] [Git][med-team/q2-cutadapt][master] 6 commits: New upstream version 2020.11.1

Steffen Möller pushed to branch master at Debian Med / q2-cutadapt Commits: 96109dc2 by Steffen Moeller at 2020-12-08T18:32:19+01:00 New upstream version 2020.11.1 - - - - - 173c4df3 by Steffen Moeller at 2020-12-08T18:32:19+01:00 routine-update: New upstream version - - - - - 611ee985

[med-svn] [Git][med-team/q2-cutadapt][pristine-tar] pristine-tar data for q2-cutadapt_2020.11.1.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-cutadapt Commits: 9db9f31d by Steffen Moeller at 2020-12-08T18:32:23+01:00 pristine-tar data for q2-cutadapt_2020.11.1.orig.tar.gz - - - - - 2 changed files: - + q2-cutadapt_2020.11.1.orig.tar.gz.delta - + q2

some bioconductor packages up for peer review

Hello, a series of packages on https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 somehow does not seem to have gone anywhere. I just added r-bioc-gseabase and r-bioc-gsva to that list. Many thanks Steffen

[med-svn] [Git][med-team/trimmomatic][master] Update metadata - update bio.tools

Steffen Möller pushed to branch master at Debian Med / trimmomatic Commits: ebc8e28e by Steffen Möller at 2020-12-07T23:31:35+00:00 Update metadata - update bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

Re: routine-update builds twice, but does not clean after the first

On 07.12.20 18:49, Steffen Möller wrote: > On 07.12.20 16:53, Nilesh Patra wrote: >> Hi,  >> >> On Mon, 7 Dec, 2020, 9:03 pm Steffen Möller, > <mailto:steffen_moel...@gmx.de>> wrote: >> >> Hello, >> >> That cleaning

[med-svn] [Git][med-team/q2-demux][pristine-tar] pristine-tar data for q2-demux_2020.11.1.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-demux Commits: ebe03392 by Steffen Moeller at 2020-12-07T23:02:21+01:00 pristine-tar data for q2-demux_2020.11.1.orig.tar.gz - - - - - 2 changed files: - + q2-demux_2020.11.1.orig.tar.gz.delta - + q2-demux_2020.11.1

[med-svn] [Git][med-team/q2-demux] Pushed new tag upstream/2020.11.1

Steffen Möller pushed new tag upstream/2020.11.1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/upstream/2020.11.1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-demux] Pushed new tag debian/2020.11.1-1

Steffen Möller pushed new tag debian/2020.11.1-1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/debian/2020.11.1-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-demux][upstream] New upstream version 2020.11.1

Steffen Möller pushed to branch upstream at Debian Med / q2-demux Commits: 509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00 New upstream version 2020.11.1 - - - - - 4 changed files: - .gitignore - Makefile - − q2_demux/_summarize/assets/package-lock.json - q2_demux/_version.py

[med-svn] [Git][med-team/q2-demux][master] 5 commits: New upstream version 2020.11.1

Steffen Möller pushed to branch master at Debian Med / q2-demux Commits: 509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00 New upstream version 2020.11.1 - - - - - df9d1f7b by Steffen Moeller at 2020-12-07T23:02:20+01:00 routine-update: New upstream version - - - - - 285fcffd

[med-svn] [Git][med-team/bcbio][master] 2 commits: Extended paths available for testing

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: a2aa99d1 by Steffen Moeller at 2020-12-07T18:40:02+01:00 Extended paths available for testing - - - - - 097a6fd6 by Steffen Moeller at 2020-12-07T18:40:30+01:00 Added build dependencies - - - - - 2 changed files

Re: routine-update builds twice, but does not clean after the first

On 07.12.20 16:53, Nilesh Patra wrote: > Hi,  > > On Mon, 7 Dec, 2020, 9:03 pm Steffen Möller, <mailto:steffen_moel...@gmx.de>> wrote: > > Hello, > > That cleaning I had introduced between the builds somewhen was removed > and to avoid some ping-po

[med-svn] [Git][med-team/mafft] Pushed new tag upstream/7.475

Steffen Möller pushed new tag upstream/7.475 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/upstream/7.475 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/mafft] Pushed new tag debian/7.475-1

Steffen Möller pushed new tag debian/7.475-1 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/debian/7.475-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/mafft][pristine-tar] pristine-tar data for mafft_7.475.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / mafft Commits: 8eb52f78 by Steffen Moeller at 2020-12-07T18:22:14+01:00 pristine-tar data for mafft_7.475.orig.tar.gz - - - - - 2 changed files: - + mafft_7.475.orig.tar.gz.delta - + mafft_7.475.orig.tar.gz.id Changes

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/2.1.1+git20201023.cc0ed3d

Steffen Möller pushed new tag upstream/2.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/2.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/1.1.1+git20201023.cc0ed3d

Steffen Möller pushed new tag upstream/1.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/1.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag debian/2.1.1+git20201023.cc0ed3d-1

Steffen Möller pushed new tag debian/2.1.1+git20201023.cc0ed3d-1 at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/debian/2.1.1+git20201023.cc0ed3d-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand][pristine-tar] 2 commits: pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / python-pbcommand Commits: 70dde775 by Steffen Moeller at 2020-12-07T16:24:19+01:00 pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz - - - - - 53d36540 by Steffen Moeller at 2020-12-07T16:42:02+01:00

routine-update builds twice, but does not clean after the first

Hello, That cleaning I had introduced between the builds somewhen was removed and to avoid some ping-pong I thought we should talk about it. I presume this is because of some system setting that runs cowbuilder when I run it within the source tree. Can routine-update please somehow test for that

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added purecn, titancna

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 50bb286a by Steffen Möller at 2020-12-07T14:21:15+00:00 Update bio-dev - added purecn, titancna - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

Re: "Introduction" tab on spreadsheet

On 07.12.20 13:46, Andrius Merkys wrote: > Hello, > > On 2020-12-07 14:23, Steffen Möller wrote: >> https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1120557851 >> >> I likely should spend less time on that nasty sheet a

"Introduction" tab on spreadsheet

https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1120557851 I likely should spend less time on that nasty sheet and more on the packaging. But I like it. And I keep having constructive 15 minutes repeatedly that I use as a break to add/verify/update say

Done Re: [RFS] libsis-base-java

Merci! On 06.12.20 22:28, Pierre Gruet wrote: > dcut dm --uid "Pierre Gruet" --allow libsis-base-java

[med-svn] [Git][med-team/signalalign][master] Update metadata - added ref to bio.tools

Steffen Möller pushed to branch master at Debian Med / signalalign Commits: 9ae08180 by Steffen Möller at 2020-12-06T17:18:51+00:00 Update metadata - added ref to bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/muscle][master] Update metadata - update d/u/metadata bio.tools

Steffen Möller pushed to branch master at Debian Med / muscle Commits: c4e2ef14 by Steffen Möller at 2020-12-06T15:29:52+00:00 Update metadata - update d/u/metadata bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian

Re: [RFS] python-biopython 1.78+dfsg-4 (Was: python-biopython_1.78+dfsg-4_source.changes REJECTED)

Heya, The only thing I suggest to add (to help backporting) is to add a version dependency on dssp (> 4) to help backporting since the versions are diverse across our releases (https://packages.debian.org/search?keywords=dssp=names=1=all=all). Best, Steffen On 06.12.20 09:28, Étienne Mollier

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