Am 21.05.21 um 15:55 schrieb Thomas Schiex:
> I'm a computer scientist working in AI and structural biology. I'm
> sorry to say that CUDA has slowly invaded a lot of our scientific
> pipelines, for Deep learning, convex optimization and molecular
> simulations.
>
> I just could not vote for
Am 21.05.21 um 14:15 schrieb Nilesh Patra:
> On 5/20/21 8:38 PM, Steffen Möller wrote:
>
>>>> datacache: https://salsa.debian.org/med-team/python-datacache
> Regarding datacache, I suppose the copyright holder should be "Mount Sinai
> School of Medicine" instea
Am 20.05.21 um 20:01 schrieb Nilesh Patra:
>
> On 5/20/21 8:38 PM, Steffen Möller wrote:
>> Am 20.05.21 um 16:36 schrieb Nilesh Patra:
>>> Hi,
>>>
>>> On 5/20/21 4:09 PM, Steffen Möller wrote:
>>>> Am 20.05.21 um 12:19 schrieb Nilesh Patra:
Am 20.05.21 um 16:36 schrieb Nilesh Patra:
> Hi,
>
> On 5/20/21 4:09 PM, Steffen Möller wrote:
>> Am 20.05.21 um 12:19 schrieb Nilesh Patra:
>>>
>>> On Thu, 20 May, 2021, 3:45 pm Steffen Möller, >> <mailto:steffen_moel...@gmx.de>> wrote:
>>&g
Am 20.05.21 um 12:19 schrieb Nilesh Patra:
>
>
> On Thu, 20 May, 2021, 3:45 pm Steffen Möller, <mailto:steffen_moel...@gmx.de>> wrote:
>
>
> Am 20.05.21 um 11:42 schrieb Andreas Tille:
> > On Thu, May 20, 2021 at 11:00:59AM +0530, Nilesh Patra wrote:
>
Am 20.05.21 um 11:42 schrieb Andreas Tille:
> On Thu, May 20, 2021 at 11:00:59AM +0530, Nilesh Patra wrote:
>> This can be uploaded to NEW right now, no?
> +1
My fear was that this would take energies away from finishing the
release. But yes, happily so.
>> It won't anyway enter testing. Or do
uch.
Best,
Steffen
Am 18.05.21 um 15:15 schrieb Nilesh Patra:
>
> On 5/18/21 6:16 PM, Steffen Möller wrote:
>> Hello,
>>
>> I just packaged xpore, which points to
>> https://github.com/openvax/pyensembl to get various sorts of sequencing
>> data, also complete geno
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : pyensembl
Version : 1.9.1+ds
Upstream Author : Copyright: Alex Rubinsteyn
* URL : https://github.com/openvax/pyensembl
* License : Apache-2.0
Programming Lang: Python
Description
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : pyensembl
Version : 1.9.1+ds
Upstream Author : Copyright: Alex Rubinsteyn
* URL : https://github.com/openvax/pyensembl
* License : Apache-2.0
Programming Lang: Python
Description
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : python-memoized-property
Version : 1.0.3
Upstream Author : Copyright: Steven Cummings
* URL : https://github.com/estebistec/python-memoized-property
* License : BSD-3-Clause
Programming
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : python-memoized-property
Version : 1.0.3
Upstream Author : Copyright: Steven Cummings
* URL : https://github.com/estebistec/python-memoized-property
* License : BSD-3-Clause
Programming
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: moel...@debian.org
Subject: ITP: python-serializable -- base class with serialization methods
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : python-serializable
Version : 0.2.1
Upstream Author : . Mount
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: moel...@debian.org
Subject: ITP: python-serializable -- base class with serialization methods
Package: wnpp
Owner: Steffen Moeller
Severity: wishlist
* Package name : python-serializable
Version : 0.2.1
Upstream Author : . Mount
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: moel...@debian.org
Subject: ITP: python-gtfparse -- parser for gene transfer format (aka GFF2)
Package: wnpp
Owner: Steffen
Severity: wishlist
* Package name : python-gtfparse
Version : 1.2.1
Upstream Author : Copyright:
* URL
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: moel...@debian.org
Subject: ITP: python-gtfparse -- parser for gene transfer format (aka GFF2)
Package: wnpp
Owner: Steffen
Severity: wishlist
* Package name : python-gtfparse
Version : 1.2.1
Upstream Author : Copyright:
* URL
Subject: ITP: python-datacache --
Package: wnpp
Owner: Steffen
Severity: wishlist
* Package name : python-datacache
Version : 0.4.7
Upstream Author : Copyright: Alex Rubinsteyn
* URL : https://github.com/openvax/datacache
* License : Apache-2.0
Programming
Subject: ITP: python-datacache --
Package: wnpp
Owner: Steffen
Severity: wishlist
* Package name : python-datacache
Version : 0.4.7
Upstream Author : Copyright: Alex Rubinsteyn
* URL : https://github.com/openvax/datacache
* License : Apache-2.0
Programming
Package: wnpp
Severity: wishlist
* Package name : python-typechecks
Version : 0.1.0
Upstream Author : Copyright:
* URL : https://github.com/openvax/typechecks
* License : Apache-2.0
Programming Lang: Python
Description : express constraints on types
Package: wnpp
Severity: wishlist
* Package name : python-typechecks
Version : 0.1.0
Upstream Author : Copyright:
* URL : https://github.com/openvax/typechecks
* License : Apache-2.0
Programming Lang: Python
Description : express constraints on types
Hello,
I just packaged xpore, which points to
https://github.com/openvax/pyensembl to get various sorts of sequencing
data, also complete genomes. I like that and address its packaging now.
New packages are uploaded to PyPi, not release tagged, but, well, ... .
In my reading this is a way to get
Package: wnpp
Severity: wishlist
* Package name : xpore
Version : 1.0
Upstream Author : Ploy N. Pratanwanich
* URL : https://github.com/GoekeLab/xpore/
* License : Expat
Programming Lang: Python
Description : Nanopore analysis of differential RNA
Package: wnpp
Severity: wishlist
* Package name : xpore
Version : 1.0
Upstream Author : Ploy N. Pratanwanich
* URL : https://github.com/GoekeLab/xpore/
* License : Expat
Programming Lang: Python
Description : Nanopore analysis of differential RNA
Steffen Möller pushed to branch master at Debian Med / bcbio
Commits:
ffdc3278 by Steffen Moeller at 2021-05-07T23:55:11+02:00
Always use our Rscript.
- - - - -
5 changed files:
- debian/README.source
- debian/changelog
- debian/control
- + debian/patches/RscriptIsSystemVersion.patch
Steffen Möller pushed new tag upstream/1.2.5 at Debian Med / bcbio
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View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/tree/upstream/1.2.5
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debian-med-commit
Steffen Möller pushed new tag upstream/1.2.8 at Debian Med / bcbio
--
View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/tree/upstream/1.2.8
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debian-med-commit
Steffen Möller pushed to branch master at Debian Med / bcbio
Commits:
6d1de787 by Steffen Moeller at 2021-05-07T20:29:57+02:00
New upstream version 1.2.8
- - - - -
c2d9ba19 by Steffen Moeller at 2021-05-07T20:29:57+02:00
routine-update: New upstream version
- - - - -
5e993c9a by Steffen
Would a regular backport be the way to go?
Would a regular backport be the way to go?
Hello,
I got across https://www.protocols.io/ and kind of liked what I saw. In
my understanding it is a semi-formal way to mix scripts with verbal
descriptions to reach for scientific goals. You could also say that
these are columns in our excel sheet, except that these do not need a
software
Steffen Möller pushed to branch master at Debian Med / vsearch
Commits:
87aafc8e by Steffen Möller at 2021-04-14T12:06:04+00:00
Update metadata - added guix, fixed indent
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Dear all,
The workshop is an opportunity to virtually meet the folks behind
WorldCommunityGrid (who are also into docking, i.e. biological), and
there are a few COVID-related talks
https://www.boincworkshop.org/schedule besides many other sciency ones.
Today, and the next two wednesdays there
Please don't be shy. Anything cross-disciplinary typically comes with an
introduction that also gets the hobby-enthusiast enough of a boost to
reasonably follow the presentation.
*———*
*
*
*viruses in silico | the EVBC lecture series*
To keep you up to date with the latest developments in
Hi Nilesh,
I am fine with it. Took some freedom to add the registry references.
Thank you for your work!
Steffen
Am 05.04.21 um 17:32 schrieb Nilesh Patra:
> Hi,
>
> Please consider reviewing nxtrim[1] - mainly for licensing stuff
> and upload, or give me a green signal so I'll do so
>
> [1]:
Steffen Möller pushed to branch master at Debian Med / nxtrim
Commits:
d785766f by Steffen Möller at 2021-04-05T17:28:23+00:00
Update metadata - added ref to registries
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Helle Shane,
Am 04.04.21 um 20:13 schrieb Shane Frasier:
> Hello,
>
> The version of botocore currently available in Debian stable (buster)
> is too old to know about IMDSv2. In order to continue deploying to
> Debian stable I need to build a stable backport from the version
> available in
Hi Nilesh,
I like it - please steam ahead.
Best,
Steffen
Am 01.04.21 um 17:03 schrieb Nilesh Patra:
> Hi,
>
> Please consider doing a review for: https://salsa.debian.org/med-team/ntcard
> (Specifically the copyrights)
>
> Please note: this has a build-dep on libnthash-dev (src:nthash) which
Am 31.03.21 um 06:11 schrieb Andreas Tille:
> Hi Nilesh,
>
> On Wed, Mar 31, 2021 at 01:02:01AM +0530, Nilesh Patra wrote:
>>> I'm very happy to see your performance to add new packages to the pool.
>>> That's really cool. It would be nice if you would add packages you
>>> are working on to the
Steffen Möller pushed to branch master at Debian Med / snpeff
Commits:
e67d7d5d by Steffen Möller at 2021-03-30T17:44:04+00:00
Update control - improved wording.
- - - - -
1 changed file:
- debian/control
Changes:
=
debian/control
While we are at it: I had to package SnpEff separately from its
companion
SnpSift, as their source trees are now completely separated.
Do you (or someone else) know if SnpSift would be important to
package?
Looking at the spreadsheet I am not sure it is worth
Steffen Möller pushed to branch master at Debian Med / snpeff
Commits:
0b6a8a87 by Steffen Möller at 2021-03-30T16:01:25+00:00
Update control - extended description
- - - - -
1 changed file:
- debian/control
Changes:
=
debian/control
Steffen Möller pushed to branch master at Debian Med / snpeff
Commits:
508aa876 by Steffen Möller at 2021-03-30T14:35:39+00:00
Update metadata - added refs to guix+SciCrunch
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian
Am 30.03.21 um 15:25 schrieb Andreas Tille:
> Hi Pierre,
>
> On Tue, Mar 30, 2021 at 01:16:17PM +0200, Pierre Gruet wrote:
>> Yes! It is almost ready and I'm happy about this :)
> That's understandable considering the lot of work.
Thank you for this. Well done, indeed.
>> While we are at it: I
Steffen Möller pushed to branch master at Debian Med / python-pangolearn
Commits:
3bc14609 by Steffen Möller at 2021-03-28T14:25:11+00:00
d/u/metadata - registry
- - - - -
1 changed file:
- + debian/upstream/metadata
Changes:
=
debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / python-pangolearn
Commits:
f1af633d by Steffen Möller at 2021-03-28T14:19:22+00:00
Update control - found mafft mentioned in a description
- - - - -
1 changed file:
- debian/control
Changes
Am 25.03.21 um 22:00 schrieb Nilesh Patra:
> On 2021-03-26 01:58, Andreas Tille wrote:
>> Hi folks,
>>
>> I have packaged bamclipper[1] since it is a precondition for the
>> pipeline covpipe[2] which is developed and used in my institute.
>> (@Steffen, possibly another column in the
Steffen Möller pushed to branch master at Debian Med / bbmap
Commits:
7a0b4b6a by Steffen Möller at 2021-03-25T20:57:36+00:00
Added d/u/metadata
- - - - -
1 changed file:
- + debian/upstream/metadata
Changes:
=
debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / bbmap
Commits:
59d349c9 by Steffen Möller at 2021-03-25T20:17:56+00:00
Update control - explained equivalence with BBTools
- - - - -
1 changed file:
- debian/control
Changes:
=
debian/control
Am 24.03.21 um 11:47 schrieb Nilesh Patra:
> Hi Steffen,
>
> Thanks for your reply. This is a lot of information, so I'll just quote
> specific sections.
>
>> There are some tools that block many columns from being completed. To
>> mention here in particular are the workflow engines, and here it
dsheet in question (and may be the spreadsheet links back to that
> Wiki)?
I had mentioned the spreadsheat in ()s after the package name. But you
can also search for the package name across sheets.
>
> On Tue, Mar 23, 2021 at 10:13:48PM +0100, Steffen Möller wrote:
>> down and what
Hi all, hi Robbi in particular,
Am 23.03.21 um 09:16 schrieb Andreas Tille:
> On Tue, Mar 23, 2021 at 12:22:49AM -0700, Nilesh Patra wrote:
>> Makes sense. Since you thin we should be extra picky about it, do you
>> think we should add
>> it into our policy somehow, or maybe add it into FAQ or
Steffen Möller pushed to branch master at Debian Med / scanpy
Commits:
78277c0c by Steffen Möller at 2021-03-23T21:39:24+00:00
Update metadata - added paper and registry entries
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian
Hi Nilesh,
Am 22.03.21 um 12:41 schrieb Nilesh Patra:
>
>> I'm mostly addressing you specifically here for the new "workflow based"
>> packages we should start working on -- as you mentioned at the sprints.
>> Since freeze work should _mostly_ be done by now, we could focus on new
>> packages
Dear Andreas,
When you are at it for the guix refs, please also add something for
conda:conda-forge. I was just about to add a ref to
https://salsa.debian.org/med-team/intake when I saw that this was
already set and just not shown on the page. Since "conda-forge" is kind
of the default channel,
Steffen Möller pushed to branch master at Debian Med / bwa
Commits:
ad2853f2 by Steffen Möller at 2021-03-06T23:16:05+00:00
Update metadata - ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / blasr
Commits:
4c589b7e by Steffen Möller at 2021-03-06T23:14:28+00:00
Update metadata - indent, ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / bedtools
Commits:
305fa2ad by Steffen Möller at 2021-03-06T23:12:27+00:00
Update metadata - indent, added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / bedops
Commits:
8bf607b7 by Steffen Möller at 2021-03-06T23:10:16+00:00
Update metadata - indent plus ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / bcftools
Commits:
4d41ed57 by Steffen Möller at 2021-03-06T23:08:06+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / bioawk
Commits:
c7000a2b by Steffen Möller at 2021-03-06T23:06:53+00:00
Update metadata - added references to registries
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian
Steffen Möller pushed to branch master at Debian Med / bowtie
Commits:
344c83aa by Steffen Möller at 2021-03-06T23:02:05+00:00
Update metadata - fixed yaml, fixed indent, added guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian
Steffen Möller pushed to branch master at Debian Med / bowtie2
Commits:
1dd8cdbe by Steffen Möller at 2021-03-06T22:59:42+00:00
Update metadata - indent plus ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / bamtools
Commits:
37913b3e by Steffen Möller at 2021-03-06T22:56:48+00:00
Update metadata - indent and ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / rna-star
Commits:
87045665 by Steffen Möller at 2021-03-06T19:45:43+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / samtools
Commits:
a7be9a5e by Steffen Möller at 2021-03-06T19:42:50+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / sambamba
Commits:
5b6a9408 by Steffen Möller at 2021-03-06T19:40:15+00:00
Update metadata - added ref to guix, fixed indent
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian
Steffen Möller pushed to branch master at Debian Med / salmon
Commits:
83ee7dfe by Steffen Möller at 2021-03-06T19:37:46+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / sailfish
Commits:
d23e86ad by Steffen Möller at 2021-03-06T19:36:56+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / python-cutadapt
Commits:
3f7978b4 by Steffen Möller at 2021-03-06T19:34:48+00:00
Update metadata - fixing indent
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Steffen Möller pushed to branch master at Debian Med / python-cutadapt
Commits:
372b4194 by Steffen Möller at 2021-03-06T19:28:18+00:00
Update metadata - added to to guix
Someone has a different opinion on indenting yaml files here.
- - - - -
1 changed file:
- debian/upstream/metadata
Steffen Möller pushed to branch master at Debian Med / vcftools
Commits:
7ba84019 by Steffen Möller at 2021-03-06T19:24:02+00:00
Update metadata - added ref to guix
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=
debian/upstream
Hi Andrius,
Am 05.03.21 um 16:13 schrieb Andrius Merkys:
> Hi Steffen,
>
> On 2021-03-04 23:12, Steffen Möller wrote:
>> This reminds me of the early days of my computer science education with
>> the question if {} and {{}} are the same thing. They are not. My first
>&g
Am 05.03.21 um 18:10 schrieb Steffen Möller:
> Am 05.03.21 um 01:10 schrieb zimoun:
>> Hi,
>>
>> On Wed, 03 Mar 2021 at 20:45, Steffen Möller wrote:
>>
>>>> What would be nice for Debian instead of
>>>> <https://guix.gnu.org/en/packages/pigx
Am 05.03.21 um 01:10 schrieb zimoun:
> Hi,
>
> On Wed, 03 Mar 2021 at 20:45, Steffen Möller wrote:
>
>>> What would be nice for Debian instead of
>>> <https://guix.gnu.org/en/packages/pigx-rnaseq-0.0.10/>?
>> The updates of Debian's packages and those
Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
829f21bf by Steffen Möller at 2021-03-03T18:21:50+00:00
Update bio - added Suggests: r-bioc-structuralvariantannotation
Plus some more alphabetical order.
- - - - -
1 changed file:
- tasks/bio
Changes
Am 05.03.21 um 01:18 schrieb zimoun:
> Hi Pjotr,
>
> On Wed, 03 Mar 2021 at 22:16, Pjotr Prins wrote:
>
>> I love Debian, but Guix packages and containers are the cats whiskers!
>> It is brilliant to have them both. I have no need for conda.
> Now this works:
>
> # apt install guix
> $ guix
Am 04.03.21 um 22:09 schrieb Tony Travis:
> On 04/03/2021 16:54, Andreas Tille wrote:
>> [...]
>> If I understood you correctly your question to Tony was whether he might
>> like to volunteer to support drafting an Outreachy proposal. Guessing
>> from Tony's response to your mail this was not
Am 04.03.21 um 17:12 schrieb Andrius Merkys:
> Hi Charles,
>
> On 2021-03-04 07:06, Charles Plessy wrote:
>> how about YAML's null value for entries for which it was confirmed that
>> the information does not exist ?
> This was my initial idea. I do not know much about YAML, but at least
> Perl
Hi Simon,
Am 02.03.21 um 14:52 schrieb zimoun:
> Hi,
>
> On Sat, 27 Feb 2021 at 19:55, Steffen Möller wrote:
>
>>>> We keep mentioning conda also the time, while guix is somewhat left
>>>> aside, but https://guix.gnu.org/packages/ is truly impressive. Somew
Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
07ab958b by Steffen Möller at 2021-03-03T18:22:56+00:00
Update bio-dev - added r-bioc-structuralvariantannotation
- - - - -
1 changed file:
- tasks/bio-dev
Changes:
=
tasks/bio
I would like to revive my Debian package for the BOINC server side that
is prepared for AutoDock. This is just something I never got around to
since ... since 2015 ... gosh. There is now also a GPU variant of
AutoDock that needs some attention - many small bits that need to be
done to complete the
Am 03.03.21 um 17:39 schrieb Matus Kalas:
> Hey all again, and thanks for your thoughts Andrius and Andreas!
>
> On 2021-03-03 09:36, Andreas Tille wrote:
>> Hi Andrius,
>>
>> On 2021-03-03 08:54, Andrius Merkys wrote:
>>> Dear Matus,
>>>
>>> On 2021-03-02 19:56, Matus Kalas wrote:
I'd
Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
d02aa293 by Steffen Möller at 2021-03-03T16:26:11+00:00
Update bio - added bioawk
- - - - -
1 changed file:
- tasks/bio
Changes:
=
tasks/bio
Am 28.02.21 um 22:17 schrieb Gianfranco Costamagna (via nm.debian.org):
> For nm.debian.org, at 2021-02-28:
> I support Markus Schade 's request to become
> Debian Maintainer.
> I have worked with Markus Schade on yadifa package, uploading it ~13
> times between 2015 and 2018.
:)
Steffen
Am 26.02.21 um 22:25 schrieb zimoun:
> Hi,
>
> On Tue, 23 Feb 2021 at 21:28, Steffen Möller
> wrote:
>
>> sudo apt-get install guix
>> guix install pigx-rnaseq
> Thanks Vagrant! :-)
> And if I may, I would recommend this Debconf track:
> <https://debconf
Hello,
Am 26.02.21 um 13:43 schrieb Nilesh Patra:
> Hi Michael and other folks,
>
> The version 2.7.8a of rna-star which Steffen uploaded a couple of days
> ago seems to use intel intrinsics which leads unfortunately builds on
> non-amd64
> Since simde is a good way to mitigate this, I tried
Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
9e40b532 by Steffen Möller at 2021-02-25T13:34:47+00:00
Update bio-dev - added python3-bx
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1 changed file:
- tasks/bio-dev
Changes:
=
tasks/bio-dev
https://bugs.kde.org/show_bug.cgi?id=213196
Steffen Möller changed:
What|Removed |Added
Status|RESOLVED|CLOSED
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Steffen Möller pushed new tag upstream/0.8.9 at Debian Med / python-bx
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Steffen Möller pushed new tag debian/0.8.9-1 at Debian Med / python-bx
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Steffen Möller pushed to branch pristine-tar at Debian Med / python-bx
Commits:
8df8340e by Steffen Moeller at 2021-02-24T21:45:57+01:00
pristine-tar data for python-bx_0.8.9.orig.tar.gz
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2 changed files:
- + python-bx_0.8.9.orig.tar.gz.delta
- + python-bx_0.8.9.orig.tar.gz.id
Hello,
sudo apt-get install guix
guix install pigx-rnaseq
indeed installs the pigx-rnaseq library with its R dependencies. It
installs it all in /gnu, which is somewhat inconvenient, as in "my root
partition complained", and it takes painstakingly long, but it works.
The system finds STAR and
Am 23.02.21 um 04:42 schrieb Aaron M. Ucko:
> Steffen Möller writes:
>
>> tests/test_exceptions_formatting.py
> AFAICT, this test deliberately raises and catches exceptions, to confirm
> that backtraces come out as expected, but runs into discrepancies
> because they wind u
Steffen Möller pushed to branch pristine-tar at Debian Med / rna-star
Commits:
ae5b2d4a by Steffen Moeller at 2021-02-23T19:14:42+01:00
pristine-tar data for rna-star_2.7.8a+dfsg.orig.tar.xz
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2 changed files:
- + rna-star_2.7.8a+dfsg.orig.tar.xz.delta
- + rna-star_2.7.8a
Steffen Möller pushed to branch upstream at Debian Med / rna-star
Commits:
a1fee817 by Steffen Moeller at 2021-02-23T19:14:41+01:00
New upstream version 2.7.8a+dfsg
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30 changed files:
- CHANGES.md
- README.md
- RELEASEnotes.md
- doc/STARmanual.pdf
- docs/STARsolo.md
- extras/doc
Steffen Möller pushed to branch master at Debian Med / rna-star
Commits:
327466cd by Steffen Moeller at 2021-02-23T19:14:40+01:00
routine-update: New upstream version
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a1fee817 by Steffen Moeller at 2021-02-23T19:14:41+01:00
New upstream version 2.7.8a+dfsg
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c127290d
Steffen Möller pushed new tag upstream/2.7.8a+dfsg at Debian Med / rna-star
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Steffen Möller pushed new tag debian/2.7.8a+dfsg-1 at Debian Med / rna-star
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Steffen Möller pushed to branch master at Debian Med / policy
Commits:
f6351db6 by Steffen Möller at 2021-02-23T17:59:51+00:00
Update policy.rst - gave ref to https://badges.debian.net/
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1 changed file:
- policy.rst
Changes:
=
policy.rst
Dear all,
Our sprinty-sprint is already a day old and this
https://salsa.debian.org/python-team/packages/loguru
was hiding on my laptop's VM. It seems all fine, except for a test of
tests/test_exceptions_formatting.py
where it calls something like
f(a,b):
return a/b
as
f(1,0)
And then
Hello,
A Debian-friendly individual close to me offers access to his ThunderX
machine to those who need it to develop Debian in some way. Access would
be bare metal, though we could have different images to remotely boot from.
Please contact me if you have any interest and I put you in touch.
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