Re: First day of online sprint

Hi Matúš, Am 18.02.21 um 22:57 schrieb Matus Kalas: > I'm personally too overloaded with other work at the moment :/ But if > you decide on an "everyone meets" timeslot e.g. on Saturday, I'll very > gladly join to say hi. I agree that this would be a good idea. Need to finish some real life work

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-bioc-gseabase, r-bioc-gsva

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 89773eaf by Steffen Möller at 2021-02-18T21:34:15+00:00 Update bio-dev - added r-bioc-gseabase, r-bioc-gsva - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

[Blends-commit] [Git][blends-team/med][master] Added r-bioc-{affxparser, oligo, oligoclasses, arrayexpress}

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: c62a1cd6 by Steffen Möller at 2021-02-18T17:53:31+00:00 Added r-bioc-{affxparser,oligo,oligoclasses,arrayexpress} - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio

Re: gabt-core and minia - still updatable for bullseye?

Am 16.02.21 um 19:27 schrieb Andreas Tille: > Hi Steffen, > > On Tue, Feb 16, 2021 at 07:09:18PM +0100, Steffen Möller wrote: >> I just backported a patch from upstream for gabt-core for which there is >> no release that allows minia to compile. Works. >> >> No

[med-svn] [Git][med-team/minia][master] 2 commits: Wording. Added myself to uploaders.

Steffen Möller pushed to branch master at Debian Med / minia Commits: 6b22ed14 by Steffen Moeller at 2021-02-16T16:14:36+01:00 Wording. Added myself to uploaders. - - - - - e30eaf4e by Steffen Moeller at 2021-02-16T19:33:20+01:00 Adjust dep to patched version of gatb - - - - - 4 changed

gabt-core and minia - still updatable for bullseye?

Hello, I just backported a patch from upstream for gabt-core for which there is no release that allows minia to compile. Works. Now - big question - shall I upload to unstable? This obviously missed the 12th. Our sprint is also a bit late in that respect :o/ $ apt-cache  rdepends

[med-svn] [Git][med-team/bioawk] Pushed new tag debian/1.0-1

Steffen Möller pushed new tag debian/1.0-1 at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/debian/1.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

Re: Failed build for seqan2 on i386

Am 12.02.21 um 22:56 schrieb Aaron M. Ucko: > Andreas Tille writes: > >> But other 32bit architectures like armel and armhf are passing[2]. So I >> fail to see why exactly i386 is failing. Is this possibly an effect of >> bug #917851? > Probably not; dropping the bug to a Bcc. Experimentation

[med-svn] [Git][med-team/bioawk] Pushed new tag upstream/1.0

Steffen Möller pushed new tag upstream/1.0 at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/upstream/1.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bioawk] Deleted tag upstream/1.0

Steffen Möller deleted tag upstream/1.0 at Debian Med / bioawk -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net

Re: bioawk - may I ask for a review?

Am 11.02.21 um 20:00 schrieb Juhani Numminen: > Nilesh Patra kirjoitti 11.2.2021 klo 19.38: >> Since soft freeze begins in just a few hours, should I upload this targeting >> unstable or experimental? >> I suppose unstable should be OK. But I'm not very well aware of what might >> be fine. So

[med-svn] [Git][med-team/bioawk] Pushed new branch pristine-tar

Steffen Möller pushed new branch pristine-tar at Debian Med / bioawk -- View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/tree/pristine-tar You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bioawk][upstream] New upstream version 1.0

Steffen Möller pushed to branch upstream at Debian Med / bioawk Commits: ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00 New upstream version 1.0 - - - - - 0 changed files: Changes: View it on GitLab: https://salsa.debian.org/med-team/bioawk/-/commit

[med-svn] [Git][med-team/bioawk][master] 3 commits: Optics - thanks Juhani

Steffen Möller pushed to branch master at Debian Med / bioawk Commits: 58f9225a by Steffen Möller at 2021-02-12T02:45:25+01:00 Optics - thanks Juhani - - - - - ab0ab07f by Steffen Möller at 2021-02-12T02:46:31+01:00 New upstream version 1.0 - - - - - f8088b37 by Steffen Möller at 2021-02

Re: bioawk - may I ask for a review?

Am 11.02.21 um 17:23 schrieb Nilesh Patra: > Hi Steffen, > > On Thu, 11 Feb 2021 at 20:48, Steffen Möller <mailto:steffen_moel...@gmx.de>> wrote: > > Hello, > > https://salsa.debian.org/med-team/bioawk > <https://salsa.debian.org/med-te

bioawk - may I ask for a review?

Hello, https://salsa.debian.org/med-team/bioawk was once requested in a PM to me and I thought that this is rather reasonable to address. I  did not craft man pages and did not add a test, I know, I  should. I likely leave this for the sprint and if anyone of yours could comment on this in the

Re: Validating debian/upstream/metadata for debian-med projects

Very nice, thanks! Steffen Am 11.02.21 um 14:52 schrieb Andreas Tille: > On Thu, Feb 11, 2021 at 03:16:51PM +0200, Andrius Merkys wrote: >> Hello, >> >> Recent thread on debian-science@ [1] motivated me to look deeper into >> enforcing quality standards of debian/upstream/metadata files (a.k.a.

[med-svn] [Git][med-team/conda] Pushed new tag upstream/4.9.2+dfsg

Steffen Möller pushed new tag upstream/4.9.2+dfsg at Debian Med / conda -- View it on GitLab: https://salsa.debian.org/med-team/conda/-/tree/upstream/4.9.2+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/conda][pristine-tar] pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / conda Commits: 0b91488c by Steffen Moeller at 2021-02-11T11:04:26+01:00 pristine-tar data for conda_4.9.2+dfsg.orig.tar.xz - - - - - 2 changed files: - + conda_4.9.2+dfsg.orig.tar.xz.delta - + conda_4.9.2+dfsg.orig.tar.xz.id

[med-svn] [Git][med-team/conda][master] 3 commits: New upstream version 4.9.2+dfsg

Steffen Möller pushed to branch master at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - bf91e4d6 by Steffen Moeller at 2021-02-11T11:04:27+01:00 Update upstream source from tag upstream/4.9.2+dfsg Update

[med-svn] [Git][med-team/conda][upstream] New upstream version 4.9.2+dfsg

Steffen Möller pushed to branch upstream at Debian Med / conda Commits: b5385062 by Steffen Moeller at 2021-02-11T11:03:38+01:00 New upstream version 4.9.2+dfsg - - - - - 29 changed files: - .cla-signers - .gitattributes - + .github/workflows/ci.yml - CHANGELOG.md - README.rst

[med-svn] [Git][med-team/conda][master] New upstream version.

Steffen Möller pushed to branch master at Debian Med / conda Commits: 6348f41f by Steffen Moeller at 2021-02-11T11:01:12+01:00 New upstream version. - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog

[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.2.6.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / bcbio Commits: 30dab8f6 by Steffen Moeller at 2021-02-10T16:25:03+01:00 pristine-tar data for bcbio_1.2.6.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.2.6.orig.tar.gz.delta - + bcbio_1.2.6.orig.tar.gz.id Changes

[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.6

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 5c8848ab by Steffen Moeller at 2021-02-10T16:24:07+01:00 New upstream version 1.2.6 - - - - - a4e8977a by Steffen Moeller at 2021-02-10T16:25:03+01:00 Update upstream source from tag upstream/1.2.6 Update to upstream

Re: Making Debian available - Testing iso download

Am 05.02.21 um 18:50 schrieb Geert Stappers: > On Fri, Feb 05, 2021 at 04:21:42PM +, Paul Sutton wrote: >> Would it be possible to make it easier to find the ISO for the next release > It is work in progress and the process is called "Doing a release". The reply was kind of funny but please

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Re: Bug#981113: ITP: root -- open-source data analysis framework

Am 26.01.21 um 16:59 schrieb Christoph Biedl: > Julien Cristau wrote... > >> On Tue, Jan 26, 2021 at 04:34:14PM +0100, Stephan Lachnit wrote: >>> * Package name: root >> [...] >>> I want to maintain ROOT in the science team. ROOT was already in Debian as >>> `root-system` [1], but hasn't

[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.5

Steffen Möller pushed to branch upstream at Debian Med / bcbio Commits: 1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00 New upstream version 1.2.5 - - - - - 30 changed files: - HISTORY.md - MANIFEST.in - README.md - bcbio/bam/__init__.py - bcbio/bam/cram.py - bcbio/chipseq

[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.5

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00 New upstream version 1.2.5 - - - - - 17c33c5a by Steffen Moeller at 2021-01-26T13:54:36+01:00 Update upstream source from tag upstream/1.2.5 Update to upstream

[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.2.5.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / bcbio Commits: 163bda1e by Steffen Moeller at 2021-01-26T13:54:36+01:00 pristine-tar data for bcbio_1.2.5.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.2.5.orig.tar.gz.delta - + bcbio_1.2.5.orig.tar.gz.id Changes

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 419f39f8 by Steffen Möller at 2021-01-26T12:51:35+00:00 Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev - - - - - 1 changed file: - tasks/bio-dev Changes

Bug#980972: xxsds-dynamic: Changelog entry missing trailer line

Thank you, Logan. I just fixed that and uploaded. Nothing new from upstream. Steffen

Bug#980972: xxsds-dynamic: Changelog entry missing trailer line

Thank you, Logan. I just fixed that and uploaded. Nothing new from upstream. Steffen

[med-svn] [Git][med-team/xxsds-dynamic][master] 2 commits: Fix for resubmission

Steffen Möller pushed to branch master at Debian Med / xxsds-dynamic Commits: dd142aa9 by Steffen Möller at 2020-09-13T19:48:03+02:00 Fix for resubmission - - - - - 79ff5f4c by Steffen Möller at 2021-01-26T12:34:25+01:00 Fixing #980972 on missing changelog trailer - - - - - 2 changed files

Re: Should we offer Debian Med workflow-containers?

Dear Olivier, dear Yaroslav, dear Alex, Thank you all for your kind and constructive replies - as expected :o) Am 18.01.21 um 12:30 schrieb olivier sallou: > On Sun, 2021-01-17 at 16:42 +0100, Steffen Möller wrote: >> Hello, >> >> Our HPC environment does not offer Do

Should we offer Debian Med workflow-containers?

Hello, Our HPC environment does not offer Docker, but Singularity (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) is supported. I thought I should give it a shot. Is anybody using this already on this list? Best, Steffen

Re: [med-svn] [Git][med-team/q2-taxa][upstream] New upstream version 2020.11.0+dfsg

Thank you for this, Nilesh! Am 13.01.21 um 16:46 schrieb Nilesh Patra: > GitLab > > > Nilesh Patra pushed to branch upstream at Debian Med / q2-taxa > > > ike to receive fewer emails, you can adjust your notification settings. > >

done Re: [RFS] socket++

Thanks! Am 10.01.21 um 12:53 schrieb Nilesh Patra: > dcut dm --uid npatra...@gmail.com --allow > socket++

Spreadsheet - added another tab "Synthetic Biology"

https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1391447257 This is not directly relevant to the pandemic. Better: This is not directly relevant to the pandemic, yet. Please dump reference of software that comes to your mind and we then prioritize this

Re: Spende via Banküberweisung

Am 07.01.21 um 17:23 schrieb Pierre-Elliott Bécue: > Le mercredi 30 décembre 2020 à 17:06:01+0100, Steffen Möller a écrit : >> This is a question about how to donate to Debian from a German-speaking >> counry while keeping fees to a minimum. I think I can answer that. >>

done Re: [RFS] libmiglayout-java

Thanks! Am 31.12.20 um 18:47 schrieb Pierre Gruet: > dcut dm --uid "Pierre Gruet" --allow libmiglayout-java

Re: Spende via Banküberweisung

eine Banküberweisung an Debian-France an.  Deren Bankverbindung steht auf https://france.debian.net/soutenir/#compte . Mit freundlichen Grüßen und besten Wünschen für 2021 Steffen Möller Am 30.12.20 um 16:28 schrieb temp0...@posteo.de: > Sehr geehrte Damen und Herren, > > ich würde ge

Done Re: [RFS] apertium-cy-en

I suggest you add a note in d/changelog that this team-upload fixes the migration to testing. And if it builds for you then close the bug with this upload. Best, Steffen Am 24.12.20 um 13:47 schrieb Nilesh Patra: > Hi, > > Currently apertium-cy-en seems to be blocking apertium's testing >

[med-svn] [Git][med-team/augustus][upstream] New upstream version 3.4.0+dfsg

Steffen Möller pushed to branch upstream at Debian Med / augustus Commits: d6d05ec1 by Steffen Moeller at 2020-12-22T17:56:24+01:00 New upstream version 3.4.0+dfsg - - - - - 30 changed files: - + .dockerignore - + .github/workflows/examples_test.yml - + .github/workflows

[med-svn] [Git][med-team/augustus][master] 8 commits: routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / augustus Commits: 76f4e72d by Steffen Moeller at 2020-12-22T17:56:13+01:00 routine-update: New upstream version - - - - - d6d05ec1 by Steffen Moeller at 2020-12-22T17:56:24+01:00 New upstream version 3.4.0+dfsg - - - - - 95fbccb4

[med-svn] [Git][med-team/augustus][pristine-tar] pristine-tar data for augustus_3.4.0+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / augustus Commits: 5834e945 by Steffen Moeller at 2020-12-22T18:02:17+01:00 pristine-tar data for augustus_3.4.0+dfsg.orig.tar.xz - - - - - 2 changed files: - + augustus_3.4.0+dfsg.orig.tar.xz.delta - + augustus_3.4.0

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag upstream/2020.11.1+dfsg

Steffen Möller pushed new tag upstream/2020.11.1+dfsg at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/upstream/2020.11.1+dfsg You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag debian/2020.11.1+dfsg-1

Steffen Möller pushed new tag debian/2020.11.1+dfsg-1 at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/debian/2020.11.1+dfsg-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table][upstream] New upstream version 2020.11.1+dfsg

Steffen Möller pushed to branch upstream at Debian Med / q2-feature-table Commits: cc3249d9 by Steffen Moeller at 2020-12-19T20:56:40+01:00 New upstream version 2020.11.1+dfsg - - - - - 1 changed file: - q2_feature_table/_version.py Changes

[med-svn] [Git][med-team/q2-feature-table][pristine-tar] pristine-tar data for q2-feature-table_2020.11.1+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-feature-table Commits: 0d22ad6d by Steffen Moeller at 2020-12-19T20:56:40+01:00 pristine-tar data for q2-feature-table_2020.11.1+dfsg.orig.tar.xz - - - - - 2 changed files: - + q2-feature-table_2020.11.1+dfsg.orig.tar.xz.delta

[med-svn] [Git][med-team/q2-feature-table][master] 5 commits: routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / q2-feature-table Commits: 193e3948 by Steffen Moeller at 2020-12-19T20:56:39+01:00 routine-update: New upstream version - - - - - cc3249d9 by Steffen Moeller at 2020-12-19T20:56:40+01:00 New upstream version 2020.11.1+dfsg

Re: RFS: robot-testing-framework/2.0.1-1 [ITP] -- Robot Testing Framework

@Nilesh, if you can help out with a Nilesh-typical review then I happily sponsor. Best, Steffen Am 15.12.20 um 09:57 schrieb Nilesh Patra: Hi Daniele On Tue, 15 Dec, 2020, 2:14 pm Daniele E. Domenichelli, mailto:ddomeniche...@drdanz.it>> wrote: Any other comment on this package?

[med-svn] [Git][med-team/pigx-scrnaseq][pristine-tar] pristine-tar data for pigx-scrnaseq_1.1.7+ds.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / pigx-scrnaseq Commits: e07cb06c by Steffen Moeller at 2020-12-14T00:08:11+01:00 pristine-tar data for pigx-scrnaseq_1.1.7+ds.orig.tar.xz - - - - - 2 changed files: - + pigx-scrnaseq_1.1.7+ds.orig.tar.xz.delta - + pigx

[med-svn] [Git][med-team/pigx-scrnaseq][master] routine-update: New upstream version

Steffen Möller pushed to branch master at Debian Med / pigx-scrnaseq Commits: 362f4910 by Steffen Moeller at 2020-12-14T00:04:25+01:00 routine-update: New upstream version - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/bcbio][master] TL;DR for d/TODO

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: a48982aa by Steffen Moeller at 2020-12-13T15:24:43+01:00 TL;DR for d/TODO - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO

[med-svn] [Git][med-team/sepp] Pushed new tag debian/4.3.10+dfsg-4

Steffen Möller pushed new tag debian/4.3.10+dfsg-4 at Debian Med / sepp -- View it on GitLab: https://salsa.debian.org/med-team/sepp/-/tree/debian/4.3.10+dfsg-4 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/sepp][master] Further refinement

Steffen Möller pushed to branch master at Debian Med / sepp Commits: 5fd4cab3 by Steffen Moeller at 2020-12-12T23:29:25+01:00 Further refinement - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/using_python3_interpreter.patch - debian/rules Changes

[med-svn] [Git][med-team/q2-fragment-insertion][master] 2 commits: Refinement of d/control

Steffen Möller pushed to branch master at Debian Med / q2-fragment-insertion Commits: 93e76b75 by Steffen Möller at 2020-12-12T15:04:38+01:00 Refinement of d/control - - - - - 3ebeb983 by Steffen Möller at 2020-12-13T00:36:37+01:00 runtime test will fail also with run-sepp.sh in place

[med-svn] [Git][med-team/sepp][master] Added sepp.install that was omitted from -3

Steffen Möller pushed to branch master at Debian Med / sepp Commits: fbee3df9 by Steffen Moeller at 2020-12-12T19:41:35+01:00 Added sepp.install that was omitted from -3 - - - - - 2 changed files: - debian/changelog - + debian/sepp.install Changes

[med-svn] [Git][med-team/sepp] Pushed new tag debian/4.3.10+dfsg-3

Steffen Möller pushed new tag debian/4.3.10+dfsg-3 at Debian Med / sepp -- View it on GitLab: https://salsa.debian.org/med-team/sepp/-/tree/debian/4.3.10+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/sepp][master] Upload of -3

Steffen Möller pushed to branch master at Debian Med / sepp Commits: 8e5b96eb by Steffen Moeller at 2020-12-12T14:57:54+01:00 Upload of -3 - - - - - 2 changed files: - debian/changelog - debian/upstream/metadata Changes: = debian/changelog

done Re: [RFS] python-pyfaidx

Thanks! Am 12.12.20 um 14:05 schrieb Nilesh Patra: dcut dm --uid npatra...@gmail.com --allow python-pyfaidx

[med-svn] [Git][med-team/sepp][master] Also redistributing run-sepp.sh for q2-fragment-insertion

Steffen Möller pushed to branch master at Debian Med / sepp Commits: d5602816 by Steffen Moeller at 2020-12-12T01:26:10+01:00 Also redistributing run-sepp.sh for q2-fragment-insertion - - - - - 3 changed files: - debian/changelog - debian/control - debian/sepp.lintian-overrides Changes

Re: some bioconductor packages up for peer review

Am 09.12.20 um 11:51 schrieb Andreas Tille: On Tue, Dec 08, 2020 at 02:47:57PM +0100, Steffen Möller wrote: a series of packages on https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 somehow does not seem to have gone anywhere. I just

[med-svn] [Git][med-team/q2-fragment-insertion][master] Added helper script, added runtim deps

Steffen Möller pushed to branch master at Debian Med / q2-fragment-insertion Commits: 8281fea2 by Steffen Möller at 2020-12-11T01:36:33+01:00 Added helper script, added runtim deps - - - - - 3 changed files: - debian/control - + debian/q2-fragment-insertion.dirs - + debian/q2-fragment

[med-svn] [Git][med-team/q2-dada2][master] Update control - extended description.

Steffen Möller pushed to branch master at Debian Med / q2-dada2 Commits: a20f2431 by Steffen Möller at 2020-12-08T23:49:25+00:00 Update control - extended description. - - - - - 1 changed file: - debian/control Changes: = debian/control

q2-dada2 added Re: some bioconductor packages up for peer review

On 08.12.20 14:47, Steffen Möller wrote: > Hello, > > a series of packages on > > https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 > > somehow does not seem to have gone anywhere. I just added > r-bioc-gseabase and

done Re: [RFS] kleborate

Thanks! On 08.12.20 20:59, Nilesh Patra wrote: > > dcut dm --uid npatra...@gmail.com --allow > kleborate

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag debian/2020.11.1-1

Steffen Möller pushed new tag debian/2020.11.1-1 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/debian/2020.11.1-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag upstream/2020.11.1

Steffen Möller pushed new tag upstream/2020.11.1 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/upstream/2020.11.1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt][upstream] New upstream version 2020.11.1

Steffen Möller pushed to branch upstream at Debian Med / q2-cutadapt Commits: 96109dc2 by Steffen Moeller at 2020-12-08T18:32:19+01:00 New upstream version 2020.11.1 - - - - - 1 changed file: - q2_cutadapt/_version.py Changes: = q2_cutadapt/_version.py

[med-svn] [Git][med-team/q2-cutadapt][master] 6 commits: New upstream version 2020.11.1

Steffen Möller pushed to branch master at Debian Med / q2-cutadapt Commits: 96109dc2 by Steffen Moeller at 2020-12-08T18:32:19+01:00 New upstream version 2020.11.1 - - - - - 173c4df3 by Steffen Moeller at 2020-12-08T18:32:19+01:00 routine-update: New upstream version - - - - - 611ee985

[med-svn] [Git][med-team/q2-cutadapt][pristine-tar] pristine-tar data for q2-cutadapt_2020.11.1.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-cutadapt Commits: 9db9f31d by Steffen Moeller at 2020-12-08T18:32:23+01:00 pristine-tar data for q2-cutadapt_2020.11.1.orig.tar.gz - - - - - 2 changed files: - + q2-cutadapt_2020.11.1.orig.tar.gz.delta - + q2

some bioconductor packages up for peer review

Hello, a series of packages on https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1251251902 somehow does not seem to have gone anywhere. I just added r-bioc-gseabase and r-bioc-gsva to that list. Many thanks Steffen

[med-svn] [Git][med-team/trimmomatic][master] Update metadata - update bio.tools

Steffen Möller pushed to branch master at Debian Med / trimmomatic Commits: ebc8e28e by Steffen Möller at 2020-12-07T23:31:35+00:00 Update metadata - update bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

Re: routine-update builds twice, but does not clean after the first

On 07.12.20 18:49, Steffen Möller wrote: > On 07.12.20 16:53, Nilesh Patra wrote: >> Hi,  >> >> On Mon, 7 Dec, 2020, 9:03 pm Steffen Möller, > <mailto:steffen_moel...@gmx.de>> wrote: >> >> Hello, >> >> That cleaning

[med-svn] [Git][med-team/q2-demux][pristine-tar] pristine-tar data for q2-demux_2020.11.1.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-demux Commits: ebe03392 by Steffen Moeller at 2020-12-07T23:02:21+01:00 pristine-tar data for q2-demux_2020.11.1.orig.tar.gz - - - - - 2 changed files: - + q2-demux_2020.11.1.orig.tar.gz.delta - + q2-demux_2020.11.1

[med-svn] [Git][med-team/q2-demux] Pushed new tag upstream/2020.11.1

Steffen Möller pushed new tag upstream/2020.11.1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/upstream/2020.11.1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-demux] Pushed new tag debian/2020.11.1-1

Steffen Möller pushed new tag debian/2020.11.1-1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/debian/2020.11.1-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-demux][upstream] New upstream version 2020.11.1

Steffen Möller pushed to branch upstream at Debian Med / q2-demux Commits: 509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00 New upstream version 2020.11.1 - - - - - 4 changed files: - .gitignore - Makefile - − q2_demux/_summarize/assets/package-lock.json - q2_demux/_version.py

[med-svn] [Git][med-team/q2-demux][master] 5 commits: New upstream version 2020.11.1

Steffen Möller pushed to branch master at Debian Med / q2-demux Commits: 509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00 New upstream version 2020.11.1 - - - - - df9d1f7b by Steffen Moeller at 2020-12-07T23:02:20+01:00 routine-update: New upstream version - - - - - 285fcffd

[med-svn] [Git][med-team/bcbio][master] 2 commits: Extended paths available for testing

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: a2aa99d1 by Steffen Moeller at 2020-12-07T18:40:02+01:00 Extended paths available for testing - - - - - 097a6fd6 by Steffen Moeller at 2020-12-07T18:40:30+01:00 Added build dependencies - - - - - 2 changed files

Re: routine-update builds twice, but does not clean after the first

On 07.12.20 16:53, Nilesh Patra wrote: > Hi,  > > On Mon, 7 Dec, 2020, 9:03 pm Steffen Möller, <mailto:steffen_moel...@gmx.de>> wrote: > > Hello, > > That cleaning I had introduced between the builds somewhen was removed > and to avoid some ping-po

[med-svn] [Git][med-team/mafft] Pushed new tag upstream/7.475

Steffen Möller pushed new tag upstream/7.475 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/upstream/7.475 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/mafft] Pushed new tag debian/7.475-1

Steffen Möller pushed new tag debian/7.475-1 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/debian/7.475-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/mafft][pristine-tar] pristine-tar data for mafft_7.475.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / mafft Commits: 8eb52f78 by Steffen Moeller at 2020-12-07T18:22:14+01:00 pristine-tar data for mafft_7.475.orig.tar.gz - - - - - 2 changed files: - + mafft_7.475.orig.tar.gz.delta - + mafft_7.475.orig.tar.gz.id Changes

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/2.1.1+git20201023.cc0ed3d

Steffen Möller pushed new tag upstream/2.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/2.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/1.1.1+git20201023.cc0ed3d

Steffen Möller pushed new tag upstream/1.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/1.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand] Pushed new tag debian/2.1.1+git20201023.cc0ed3d-1

Steffen Möller pushed new tag debian/2.1.1+git20201023.cc0ed3d-1 at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/debian/2.1.1+git20201023.cc0ed3d-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-pbcommand][pristine-tar] 2 commits: pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / python-pbcommand Commits: 70dde775 by Steffen Moeller at 2020-12-07T16:24:19+01:00 pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz - - - - - 53d36540 by Steffen Moeller at 2020-12-07T16:42:02+01:00

routine-update builds twice, but does not clean after the first

Hello, That cleaning I had introduced between the builds somewhen was removed and to avoid some ping-pong I thought we should talk about it. I presume this is because of some system setting that runs cowbuilder when I run it within the source tree. Can routine-update please somehow test for that

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added purecn, titancna

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 50bb286a by Steffen Möller at 2020-12-07T14:21:15+00:00 Update bio-dev - added purecn, titancna - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

Re: "Introduction" tab on spreadsheet

On 07.12.20 13:46, Andrius Merkys wrote: > Hello, > > On 2020-12-07 14:23, Steffen Möller wrote: >> https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1120557851 >> >> I likely should spend less time on that nasty sheet a

"Introduction" tab on spreadsheet

https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1120557851 I likely should spend less time on that nasty sheet and more on the packaging. But I like it. And I keep having constructive 15 minutes repeatedly that I use as a break to add/verify/update say

Done Re: [RFS] libsis-base-java

Merci! On 06.12.20 22:28, Pierre Gruet wrote: > dcut dm --uid "Pierre Gruet" --allow libsis-base-java

[med-svn] [Git][med-team/signalalign][master] Update metadata - added ref to bio.tools

Steffen Möller pushed to branch master at Debian Med / signalalign Commits: 9ae08180 by Steffen Möller at 2020-12-06T17:18:51+00:00 Update metadata - added ref to bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/muscle][master] Update metadata - update d/u/metadata bio.tools

Steffen Möller pushed to branch master at Debian Med / muscle Commits: c4e2ef14 by Steffen Möller at 2020-12-06T15:29:52+00:00 Update metadata - update d/u/metadata bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian

Re: [RFS] python-biopython 1.78+dfsg-4 (Was: python-biopython_1.78+dfsg-4_source.changes REJECTED)

Heya, The only thing I suggest to add (to help backporting) is to add a version dependency on dssp (> 4) to help backporting since the versions are diverse across our releases (https://packages.debian.org/search?keywords=dssp=names=1=all=all). Best, Steffen On 06.12.20 09:28, Étienne Mollier

done Re: [RFS] odil

Thanks! On 05.12.20 17:37, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow > odil

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