Hi,
I would like to compare the results from plmTr and plmEx, estimation of
overall expression for transcripts and exon-by-exon estimation,
but when i tried to run ExonRmaPlm with mergeGroups = T and F,
respectively, i am getting the identical results for following objects
including FIRMA
And one more question:
On the FIRMA scores, what are NA values, though expression levels are not
zero?
Thanks,
Sunghee
2014년 9월 22일 월요일 오전 10시 50분 25초 UTC+9, jjspring OH 님의 말:
Hi,
I would like to compare the results from plmTr and plmEx, estimation of
overall expression
: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL'
Many Thanks!
Sunghee
2014년 9월 20일 토요일 오후 7시 58분 39초 UTC+9, jjspring OH 님의 말:
Thanks Henrik,
Yes, There is no error message on the command line display(ae) but when i
open up the file under the directory (/results
Hi,
After setting up the directory, performed background correction and rank
based quantile normalization,
library(aroma.affymetrix)
verbose - Arguments$getVerbose(-8, timestamp=T)
chipType - RaGene-1_0-st-v1
cdf - AffymetrixCdfFile$byChipType(chipType, tags=r3)
cs -
오후 2시 14분 45초 UTC+9, Henrik Bengtsson 님의 말:
Ok, and then the output of:
path - getPath(plm)
print(path)
dir(plmData)
isDirectory(plmData)
Arguments$getReadablePath(plmData)
/H
On Tue, Sep 16, 2014 at 9:57 PM, jjspring OH sshsh...@gmail.com
javascript: wrote:
Hi Henrik
Hi
I am working on aroma.affymetrix package,
btw, it seems like i set up the annotationDat and rawData directory under
the current working directory(/arom-anal) right,
but not working when i upload cdf file with cdf -
AffymetrixCdfFile$byChipType(chipType, tags=r3)
Please see my sessionInfo()
