Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation

2015-01-07 Thread Chengyu Liu
Thanks,it is working now. I am sorry for the late reply. I was on holidays and just back. About ACS, UGP and UFL, are they necessary for the copy number calls? Br, On Monday, December 15, 2014 8:25:17 PM UTC+2, Henrik Bengtsson wrote: On Mon, Dec 15, 2014 at 8:38 AM, Chengyu Liu

Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation

2015-01-07 Thread Henrik Bengtsson
On Jan 7, 2015 3:43 AM, Chengyu Liu chengyu.liu...@gmail.com wrote: Thanks,it is working now. I am sorry for the late reply. I was on holidays and just back. About ACS, UGP and UFL, are they necessary for the copy number calls? Yes. Henrik Br, On Monday, December 15, 2014 8:25:17 PM

Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation

2014-12-15 Thread Chengyu Liu
Thanks. I tried to bypass the NetAffx issue. I downloaded the cdf file from aroma (http://www.aroma-project.org/data/annotationData/chipTypes/CytoScanHD_Array/) and Affymetrix website. Annotation file can be located, but following functions does not work. It was my first time to deal with