Hi Henrik, Hi Pierre,
Thanks a lot for your precious helps.
Henrik , you are right: two files were not ofthe correct size:
GenomeWIDEufl and GenomeWIDEugp. I downloaded them again from
aroma.org
Now, i will do the complete run of ACNE test of the GSE14996 dataset. Other
questions will
Hello,
I follow the setup of the vignette but failed again
setwd(c:/Users/foucault/Bioinformatic/acne/Test/)
library(aroma.affymetrix);
library(ACNE);
verbose - Arguments$getVerbose(-10, timestamp=TRUE);
dataSet - GSE14996,testSet;
chipType - GenomeWideSNP_6;
cdf -
Hi,
On Thu, Apr 5, 2012 at 10:17 AM, Frederic Foucault
frederic.fouca...@gmail.com wrote:
Hello,
I follow the setup of the vignette but failed again
setwd(c:/Users/foucault/Bioinformatic/acne/Test/)
library(aroma.affymetrix);
library(ACNE);
verbose - Arguments$getVerbose(-10,
Hi,
Here is the path
path - getPath(cdf)
list.files(path)
[1] GenomeWideSNP_6,Full,HB20080710.acs
GenomeWideSNP_6,Full,na31,hg19,HB20110328.ufl
[3] GenomeWideSNP_6,Full,na31,hg19,HB20110328.ugp
GenomeWideSNP_6,Full.cdf
Frederic
Le mercredi 4 avril 2012 16:57:18 UTC+2, Frederic
Hi,
first of all, there is a very simple reason for this, we just have to
find out why. My best guess now is that one of the files are
incomplete. Start a fresh R session and verify that you get the
exactly same *file sizes* as below:
library(aroma.affymetrix);
cdf -
...and by the way, what is your sessionInfo(), i.e. what does the
following report?
library(aroma.affymetrix);
sessionInfo();
/Henrik
On Thu, Apr 5, 2012 at 1:55 PM, Henrik Bengtsson
henrik.bengts...@aroma-project.org wrote:
Hi,
first of all, there is a very simple reason for this, we just
