Re: [aroma.affymetrix] [process and display function in aroma.affymetrix]

2014-09-21 Thread Henrik Bengtsson
On Sat, Sep 20, 2014 at 9:11 PM, jjspring OH sshshoh1...@gmail.com wrote: Thanks! Yes, it seems it is due to old version for manual example, Everything is done when i follow the URL for now and getting display(ae) result (attached file) BTW just checking out for one warning message from

Re: [aroma.affymetrix] [process and display function in aroma.affymetrix]

2014-09-20 Thread jjspring OH
And also, For process(ae) getting warning messages(pls see below) it seems to be related with next command lines it does not matter? could you please take a closer look at these as well? curent sessionInfo is R version 3.1.1 (2014-07-10) Platform: x86_64-apple-darwin10.8.0 (64-bit)

Re: [aroma.affymetrix] [process and display function in aroma.affymetrix]

2014-09-20 Thread Henrik Bengtsson
How are you setting up the ArrayExplorer? It looks like you're missing to set the color maps. Are you following a particular example (URL?) that could be wrong. Have a look at http://www.aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis for an example. /Henrik On Sat, Sep 20, 2014 at