Re: [aroma.affymetrix] Doubts in PSCBS segments

2014-04-16 Thread Juan José Lozano Salvatella
Hi Henrik Thanks!! I understand. It seems X-files. I dont known what happens because i use the same script. May be the problem is related to past reruns in other computer (and probably other versions). When i use the script in a new rawdata folder (moving the cels and thus no using probedata

Re: [aroma.affymetrix] Doubts in PSCBS segments

2014-04-16 Thread Henrik Bengtsson
On Wed, Apr 16, 2014 at 5:44 AM, Juan José Lozano Salvatella juanjo.loz...@ciberehd.org wrote: Hi Henrik Thanks!! I understand. It seems X-files. I dont known what happens because i use the same script. May be the problem is related to past reruns in other computer (and probably other

Re: [aroma.affymetrix] Doubts in PSCBS segments

2014-04-15 Thread Henrik Bengtsson
Hi, from the script you attached I see that you're looking at the online vignette http://aroma-project.org/vignettes/PairedPSCBS-lowlevel FYI, there is also a vignette in the PSCBS package [e.g. cran.r-project.org/web/packages/PSCBS] that you might find useful, particularly on how to avoid