On Thu, Dec 11, 2014 at 4:52 AM, Rishi Das Roy rishi.das...@gmail.com wrote:
Hi
Thanks for your reply. I can understand that I can identify alternative
splicing through FIRMA more confidently. However I also want to identify
differentially expressed genes. I have not find any documentation
Hi,
I was trying to perform RMA on *Mouse Exon 1.0 ST Array* as described in
aroma website (link http://www.aroma-project.org/replication/RMA) using
custom cdf MoEx-1_0-st-v1,coreR1,A20080718,MR.cdf.gz
Hi,
you cannot use RMA on exon-arrays, you will need to use exon-aware
method such as FIRMA (e.g.
http://aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis).
Hope this helps
Henrik
PS. For http://aroma-project.org/replication/RMA, I've updated it to
use `theta - extractTheta(ces)`
