Hi,
After setting up the directory, performed background correction and rank
based quantile normalization,
library(aroma.affymetrix)
verbose - Arguments$getVerbose(-8, timestamp=T)
chipType - RaGene-1_0-st-v1
cdf - AffymetrixCdfFile$byChipType(chipType, tags=r3)
cs -
That is really odd and I've never seen that error (8-9 years now).
There must be a simple answer to this. What does:
print(plm)
print(getwd())
output when you get to that step.
/Henrik
On Tue, Sep 16, 2014 at 9:38 PM, jjspring OH sshshoh1...@gmail.com wrote:
Hi,
After setting up the
Ok, and then the output of:
path - getPath(plm)
print(path)
dir(plmData)
isDirectory(plmData)
Arguments$getReadablePath(plmData)
/H
On Tue, Sep 16, 2014 at 9:57 PM, jjspring OH sshshoh1...@gmail.com wrote:
Hi Henrik,
See below:
print(plm)
RmaPlm:
Data set: tissues
Chip type:
Hi Henrik,
See the outputs:
path - getPath(plm)
print(path)
[1] plmData/tissues,RBC,QN,RMA/RaGene-1_0-st-v1
dir(plmData)
[1] tissues,RBC,QN,RMAtissues,RBC,QN,RMA,merged
isDirectory(plmData)
[1] TRUE
Arguments$getReadablePath(plmData)
[1] plmData
2014년 9월 17일 수요일
