Hi, I am following the vignette on paired total copy number analysis.
So far, my cdf files and the rawData directory structure looks ok. When I
do
dsList - doCRMAv2(dataSet, cdf=cdf, combineAlleles=FALSE, verbose=verbose)
I get the following error and I can't see a dsList object created.
of calculating raw total copy
numbers manually?
I also want the BAF of these samples and I feel as if I am basically
repeating normalizing step in order to get these 2 tasks.
I have some 150 arrays.
Thanks,
Arshi
--
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
at cbs stage.
In DNAcopy::CNA(genomdat = data$y, chrom = data$chromosome, data.type =
logratio, :
array has repeated maploc positions
Thanks so much!
Arshi
On Friday, May 29, 2015 at 7:35:13 PM UTC-4, Henrik Bengtsson wrote:
BTW,
the output of
packageDescription(sfit)
is also useful
