Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Good to hear. /Henrik On Fri, Mar 25, 2016 at 10:11 AM, C.C.wrote: > I installed R 3.2.3 (don't know why unable to install R 3.2.4) and then > reinstalled aroma.affymetrix 3.0. It worked! > Thanks Henrik! > > On Thursday, March 24, 2016 at 2:16:57 PM UTC-7, Henrik Bengtsson wrote: >> >> You most likely got an error during installation, because >> aroma.affymetrix now requires R (≥ 3.1.2) - >> https://cran.r-project.org/web/packages/aroma.affymetrix/ - and you're >> on R 3.1.0, which is nearly two years old. >> >> The solution is to update to a recent version of R, i.e. R 3.2.4. >> FYI, R 3.3.0 is coming in a few weeks. >> >> /Henrik >> >> On Thu, Mar 24, 2016 at 2:12 PM, Henrik Bengtsson >> wrote: >> > On Thu, Mar 24, 2016 at 1:54 PM, C.C. wrote: >> >> Hi Henrik, >> >> >> >> Thanks for you email. Here is the problem I encountered. >> >> >> >> >> >> >> >> I installed the package using, it is the latest version 3.0.0 >> >> >> >> >> >> source('http://callr.org/install#aroma.affymetrix') >> > >> > Did you get errors and did you make sure you restarted R, because your >> > session information below says you're still running lots of outdated >> > versions, e.g. aroma.affymetrix_2.13.1. >> > >> > /Henrik >> > >> >> >> >> >> >> >> >> and I was trying to run doCRMAv2 >> >> >> >> dsList <- doCRMAv2(cel.subset, cdf=cdf, >> >> verbose=Arguments$getVerbose(-10, timestamp=TRUE)) >> >> >> >> >> >> >> >> and then got error information >> >> >> >>> > >>> renamed >> >>> to 'center'. Please update code accordingly.> >> >>> >> >>> [2016-03-24 13:12:44] Exception: The fit function for requested AvgPlm >> >>> flavor failed: median >> >>> >> >>> >> >>> >> >>> >> >>> at #08. getFitUnitGroupFunction.AvgPlm(this, ...) >> >>> >> >>> - getFitUnitGroupFunction.AvgPlm() is in environment >> >>> 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #07. getFitUnitGroupFunction(this, ...) >> >>> >> >>> - getFitUnitGroupFunction() is in environment >> >>> 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #06. getFitUnitFunction.CnPlm(this) >> >>> >> >>> - getFitUnitFunction.CnPlm() is in environment >> >>> 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #05. getFitUnitFunction(this) >> >>> >> >>> - getFitUnitFunction() is in environment 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #04. fit.ProbeLevelModel(plm, verbose = verbose) >> >>> >> >>> - fit.ProbeLevelModel() is in environment 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #03. fit(plm, verbose = verbose) >> >>> >> >>> - fit() is in environment 'aroma.core' >> >>> >> >>> >> >>> >> >>> >> >>> at #02. doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = >> >>> Arguments$getVerbose(-10, >> >>> >> >>> timestamp = TRUE)) >> >>> >> >>> - doCRMAv2.AffymetrixCelSet() is in environment >> >>> 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> at #01. doCRMAv2(cel.subset, cdf = cdf, verbose = >> >>> Arguments$getVerbose(-10, >> >>> >> >>> timestamp = TRUE)) >> >>> >> >>> - doCRMAv2() is in environment 'aroma.affymetrix' >> >>> >> >>> >> >>> >> >>> >> >>> Error: The fit function for requested AvgPlm flavor failed: median >> >>> >> >>> 20160324 13:12:44| Setting up parameter sets...done >> >>> >> >>> 20160324 13:12:44| Fitting model of class AvgCnPlm...done >> >>> >> >> >>> >> >> traceback() >> >> >> >> >> >>> >> >>> 13: stop(cond) >> >>> >> >>> 12: throw.Exception(Exception(...)) >> >>> >> >>> 11: throw(Exception(...)) >> >>> >> >>> 10: throw.default("The fit function for requested AvgPlm flavor >> >>> failed: ", >> >>> >> >>> flavor) >> >>> >> >>> 9: throw("The fit function for requested AvgPlm flavor failed: ", >> >>> >> >>>flavor) >> >>> >> >>> 8: getFitUnitGroupFunction.AvgPlm(this, ...) >> >>> >> >>> 7: getFitUnitGroupFunction(this, ...) >> >>> >> >>> 6: getFitUnitFunction.CnPlm(this) >> >>> >> >>> 5: getFitUnitFunction(this) >> >>> >> >>> 4: fit.ProbeLevelModel(plm, verbose = verbose) >> >>> >> >>> 3: fit(plm, verbose = verbose) >> >>> >> >>> 2: doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = v) >> >>> >> >>> 1: doCRMAv2(cel.subset, cdf = cdf, verbose = v) >> >>> >> >>> >> >> sessionInfo() >> >> >> >> >> >>> >> >>> R version 3.1.0 (2014-04-10) >> >>> >> >>> Platform: x86_64-redhat-linux-gnu (64-bit) >> >>> >> >>> >> >>> locale: >> >>> >> >>> [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C >> >>> LC_TIME=en_US.iso885915LC_COLLATE=en_US.iso885915 >> >>> LC_MONETARY=en_US.iso885915LC_MESSAGES=en_US.iso885915 >> >>> LC_PAPER=en_US.iso885915 >> >>> >> >>> [8] LC_NAME=C LC_ADDRESS=C >> >>> LC_TELEPHONE=C LC_MEASUREMENT=en_US.iso885915 >> >>> LC_IDENTIFICATION=C >> >>> >> >>> >> >>> attached base packages: >> >>> >> >>> [1] stats graphics grDevices utils
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
I installed R 3.2.3 (don't know why unable to install R 3.2.4) and then reinstalled aroma.affymetrix 3.0. It worked! Thanks Henrik! On Thursday, March 24, 2016 at 2:16:57 PM UTC-7, Henrik Bengtsson wrote: > > You most likely got an error during installation, because > aroma.affymetrix now requires R (≥ 3.1.2) - > https://cran.r-project.org/web/packages/aroma.affymetrix/ - and you're > on R 3.1.0, which is nearly two years old. > > The solution is to update to a recent version of R, i.e. R 3.2.4. > FYI, R 3.3.0 is coming in a few weeks. > > /Henrik > > On Thu, Mar 24, 2016 at 2:12 PM, Henrik Bengtsson >wrote: > > On Thu, Mar 24, 2016 at 1:54 PM, C.C. > wrote: > >> Hi Henrik, > >> > >> Thanks for you email. Here is the problem I encountered. > >> > >> > >> > >> I installed the package using, it is the latest version 3.0.0 > >> > >> > >> source('http://callr.org/install#aroma.affymetrix') > > > > Did you get errors and did you make sure you restarted R, because your > > session information below says you're still running lots of outdated > > versions, e.g. aroma.affymetrix_2.13.1. > > > > /Henrik > > > >> > >> > >> > >> and I was trying to run doCRMAv2 > >> > >> dsList <- doCRMAv2(cel.subset, cdf=cdf, > >> verbose=Arguments$getVerbose(-10, timestamp=TRUE)) > >> > >> > >> > >> and then got error information > >> > >>> >>> renamed > >>> to 'center'. Please update code accordingly.> > >>> > >>> [2016-03-24 13:12:44] Exception: The fit function for requested AvgPlm > >>> flavor failed: median > >>> > >>> > >>> > >>> > >>> at #08. getFitUnitGroupFunction.AvgPlm(this, ...) > >>> > >>> - getFitUnitGroupFunction.AvgPlm() is in environment > >>> 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #07. getFitUnitGroupFunction(this, ...) > >>> > >>> - getFitUnitGroupFunction() is in environment > 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #06. getFitUnitFunction.CnPlm(this) > >>> > >>> - getFitUnitFunction.CnPlm() is in environment > >>> 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #05. getFitUnitFunction(this) > >>> > >>> - getFitUnitFunction() is in environment 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #04. fit.ProbeLevelModel(plm, verbose = verbose) > >>> > >>> - fit.ProbeLevelModel() is in environment 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #03. fit(plm, verbose = verbose) > >>> > >>> - fit() is in environment 'aroma.core' > >>> > >>> > >>> > >>> > >>> at #02. doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = > >>> Arguments$getVerbose(-10, > >>> > >>> timestamp = TRUE)) > >>> > >>> - doCRMAv2.AffymetrixCelSet() is in environment > >>> 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> at #01. doCRMAv2(cel.subset, cdf = cdf, verbose = > >>> Arguments$getVerbose(-10, > >>> > >>> timestamp = TRUE)) > >>> > >>> - doCRMAv2() is in environment 'aroma.affymetrix' > >>> > >>> > >>> > >>> > >>> Error: The fit function for requested AvgPlm flavor failed: median > >>> > >>> 20160324 13:12:44| Setting up parameter sets...done > >>> > >>> 20160324 13:12:44| Fitting model of class AvgCnPlm...done > >>> > > >>> > >> traceback() > >> > >> > >>> > >>> 13: stop(cond) > >>> > >>> 12: throw.Exception(Exception(...)) > >>> > >>> 11: throw(Exception(...)) > >>> > >>> 10: throw.default("The fit function for requested AvgPlm flavor > failed: ", > >>> > >>> flavor) > >>> > >>> 9: throw("The fit function for requested AvgPlm flavor failed: ", > >>> > >>>flavor) > >>> > >>> 8: getFitUnitGroupFunction.AvgPlm(this, ...) > >>> > >>> 7: getFitUnitGroupFunction(this, ...) > >>> > >>> 6: getFitUnitFunction.CnPlm(this) > >>> > >>> 5: getFitUnitFunction(this) > >>> > >>> 4: fit.ProbeLevelModel(plm, verbose = verbose) > >>> > >>> 3: fit(plm, verbose = verbose) > >>> > >>> 2: doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = v) > >>> > >>> 1: doCRMAv2(cel.subset, cdf = cdf, verbose = v) > >>> > >>> > >> sessionInfo() > >> > >> > >>> > >>> R version 3.1.0 (2014-04-10) > >>> > >>> Platform: x86_64-redhat-linux-gnu (64-bit) > >>> > >>> > >>> locale: > >>> > >>> [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C > >>> LC_TIME=en_US.iso885915LC_COLLATE=en_US.iso885915 > >>> LC_MONETARY=en_US.iso885915LC_MESSAGES=en_US.iso885915 > >>> LC_PAPER=en_US.iso885915 > >>> > >>> [8] LC_NAME=C LC_ADDRESS=C > >>> LC_TELEPHONE=C LC_MEASUREMENT=en_US.iso885915 > >>> LC_IDENTIFICATION=C > >>> > >>> > >>> attached base packages: > >>> > >>> [1] stats graphics grDevices utils datasets methods base > >>> > >>> > >>> other attached packages: > >>> > >>> [1] sfit_0.3.0
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
You most likely got an error during installation, because aroma.affymetrix now requires R (≥ 3.1.2) - https://cran.r-project.org/web/packages/aroma.affymetrix/ - and you're on R 3.1.0, which is nearly two years old. The solution is to update to a recent version of R, i.e. R 3.2.4. FYI, R 3.3.0 is coming in a few weeks. /Henrik On Thu, Mar 24, 2016 at 2:12 PM, Henrik Bengtssonwrote: > On Thu, Mar 24, 2016 at 1:54 PM, C.C. wrote: >> Hi Henrik, >> >> Thanks for you email. Here is the problem I encountered. >> >> >> >> I installed the package using, it is the latest version 3.0.0 >> >> >> source('http://callr.org/install#aroma.affymetrix') > > Did you get errors and did you make sure you restarted R, because your > session information below says you're still running lots of outdated > versions, e.g. aroma.affymetrix_2.13.1. > > /Henrik > >> >> >> >> and I was trying to run doCRMAv2 >> >> dsList <- doCRMAv2(cel.subset, cdf=cdf, >> verbose=Arguments$getVerbose(-10, timestamp=TRUE)) >> >> >> >> and then got error information >> >>> >> renamed >>> to 'center'. Please update code accordingly.> >>> >>> [2016-03-24 13:12:44] Exception: The fit function for requested AvgPlm >>> flavor failed: median >>> >>> >>> >>> >>> at #08. getFitUnitGroupFunction.AvgPlm(this, ...) >>> >>> - getFitUnitGroupFunction.AvgPlm() is in environment >>> 'aroma.affymetrix' >>> >>> >>> >>> >>> at #07. getFitUnitGroupFunction(this, ...) >>> >>> - getFitUnitGroupFunction() is in environment 'aroma.affymetrix' >>> >>> >>> >>> >>> at #06. getFitUnitFunction.CnPlm(this) >>> >>> - getFitUnitFunction.CnPlm() is in environment >>> 'aroma.affymetrix' >>> >>> >>> >>> >>> at #05. getFitUnitFunction(this) >>> >>> - getFitUnitFunction() is in environment 'aroma.affymetrix' >>> >>> >>> >>> >>> at #04. fit.ProbeLevelModel(plm, verbose = verbose) >>> >>> - fit.ProbeLevelModel() is in environment 'aroma.affymetrix' >>> >>> >>> >>> >>> at #03. fit(plm, verbose = verbose) >>> >>> - fit() is in environment 'aroma.core' >>> >>> >>> >>> >>> at #02. doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = >>> Arguments$getVerbose(-10, >>> >>> timestamp = TRUE)) >>> >>> - doCRMAv2.AffymetrixCelSet() is in environment >>> 'aroma.affymetrix' >>> >>> >>> >>> >>> at #01. doCRMAv2(cel.subset, cdf = cdf, verbose = >>> Arguments$getVerbose(-10, >>> >>> timestamp = TRUE)) >>> >>> - doCRMAv2() is in environment 'aroma.affymetrix' >>> >>> >>> >>> >>> Error: The fit function for requested AvgPlm flavor failed: median >>> >>> 20160324 13:12:44| Setting up parameter sets...done >>> >>> 20160324 13:12:44| Fitting model of class AvgCnPlm...done >>> >>> >> traceback() >> >> >>> >>> 13: stop(cond) >>> >>> 12: throw.Exception(Exception(...)) >>> >>> 11: throw(Exception(...)) >>> >>> 10: throw.default("The fit function for requested AvgPlm flavor failed: ", >>> >>> flavor) >>> >>> 9: throw("The fit function for requested AvgPlm flavor failed: ", >>> >>>flavor) >>> >>> 8: getFitUnitGroupFunction.AvgPlm(this, ...) >>> >>> 7: getFitUnitGroupFunction(this, ...) >>> >>> 6: getFitUnitFunction.CnPlm(this) >>> >>> 5: getFitUnitFunction(this) >>> >>> 4: fit.ProbeLevelModel(plm, verbose = verbose) >>> >>> 3: fit(plm, verbose = verbose) >>> >>> 2: doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = v) >>> >>> 1: doCRMAv2(cel.subset, cdf = cdf, verbose = v) >>> >>> >> sessionInfo() >> >> >>> >>> R version 3.1.0 (2014-04-10) >>> >>> Platform: x86_64-redhat-linux-gnu (64-bit) >>> >>> >>> locale: >>> >>> [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C >>> LC_TIME=en_US.iso885915LC_COLLATE=en_US.iso885915 >>> LC_MONETARY=en_US.iso885915LC_MESSAGES=en_US.iso885915 >>> LC_PAPER=en_US.iso885915 >>> >>> [8] LC_NAME=C LC_ADDRESS=C >>> LC_TELEPHONE=C LC_MEASUREMENT=en_US.iso885915 >>> LC_IDENTIFICATION=C >>> >>> >>> attached base packages: >>> >>> [1] stats graphics grDevices utils datasets methods base >>> >>> >>> other attached packages: >>> >>> [1] sfit_0.3.0 aroma.light_2.0.0 matrixStats_0.50.1 >>> aroma.affymetrix_2.13.1 aroma.core_2.13.0 R.devices_2.14.0 >>> R.filesets_2.6.0R.utils_2.2.0 R.oo_1.20.0 >>> affxparser_1.36.0 >>> >>> [11] R.methodsS3_1.7.1 >>> >>> >>> loaded via a namespace (and not attached): >>> >>> [1] aroma.apd_0.6.0 base64enc_0.1-4 digest_0.6.9DNAcopy_1.38.1 >>> PSCBS_0.43.0R.cache_0.12.0 R.huge_0.9.0R.rsp_0.21.0 >>> tools_3.1.0 >>> >>> >> >> On Thursday, March 24, 2016 at 12:22:36 PM UTC-7, Henrik Bengtsson wrote: >>> >>> Hi, in order for us to help you, could you please: >>> >>> "[...] make sure 1) to run the latest version of the package, 2) to >>> report the output of sessionInfo() and traceback(), and 3) to post a >>> complete code
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
On Thu, Mar 24, 2016 at 1:54 PM, C.C.wrote: > Hi Henrik, > > Thanks for you email. Here is the problem I encountered. > > > > I installed the package using, it is the latest version 3.0.0 > > > source('http://callr.org/install#aroma.affymetrix') Did you get errors and did you make sure you restarted R, because your session information below says you're still running lots of outdated versions, e.g. aroma.affymetrix_2.13.1. /Henrik > > > > and I was trying to run doCRMAv2 > > dsList <- doCRMAv2(cel.subset, cdf=cdf, > verbose=Arguments$getVerbose(-10, timestamp=TRUE)) > > > > and then got error information > >> > renamed >> to 'center'. Please update code accordingly.> >> >> [2016-03-24 13:12:44] Exception: The fit function for requested AvgPlm >> flavor failed: median >> >> >> >> >> at #08. getFitUnitGroupFunction.AvgPlm(this, ...) >> >> - getFitUnitGroupFunction.AvgPlm() is in environment >> 'aroma.affymetrix' >> >> >> >> >> at #07. getFitUnitGroupFunction(this, ...) >> >> - getFitUnitGroupFunction() is in environment 'aroma.affymetrix' >> >> >> >> >> at #06. getFitUnitFunction.CnPlm(this) >> >> - getFitUnitFunction.CnPlm() is in environment >> 'aroma.affymetrix' >> >> >> >> >> at #05. getFitUnitFunction(this) >> >> - getFitUnitFunction() is in environment 'aroma.affymetrix' >> >> >> >> >> at #04. fit.ProbeLevelModel(plm, verbose = verbose) >> >> - fit.ProbeLevelModel() is in environment 'aroma.affymetrix' >> >> >> >> >> at #03. fit(plm, verbose = verbose) >> >> - fit() is in environment 'aroma.core' >> >> >> >> >> at #02. doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = >> Arguments$getVerbose(-10, >> >> timestamp = TRUE)) >> >> - doCRMAv2.AffymetrixCelSet() is in environment >> 'aroma.affymetrix' >> >> >> >> >> at #01. doCRMAv2(cel.subset, cdf = cdf, verbose = >> Arguments$getVerbose(-10, >> >> timestamp = TRUE)) >> >> - doCRMAv2() is in environment 'aroma.affymetrix' >> >> >> >> >> Error: The fit function for requested AvgPlm flavor failed: median >> >> 20160324 13:12:44| Setting up parameter sets...done >> >> 20160324 13:12:44| Fitting model of class AvgCnPlm...done >> >>> >> > traceback() > > >> >> 13: stop(cond) >> >> 12: throw.Exception(Exception(...)) >> >> 11: throw(Exception(...)) >> >> 10: throw.default("The fit function for requested AvgPlm flavor failed: ", >> >> flavor) >> >> 9: throw("The fit function for requested AvgPlm flavor failed: ", >> >>flavor) >> >> 8: getFitUnitGroupFunction.AvgPlm(this, ...) >> >> 7: getFitUnitGroupFunction(this, ...) >> >> 6: getFitUnitFunction.CnPlm(this) >> >> 5: getFitUnitFunction(this) >> >> 4: fit.ProbeLevelModel(plm, verbose = verbose) >> >> 3: fit(plm, verbose = verbose) >> >> 2: doCRMAv2.AffymetrixCelSet(cel.subset, cdf = cdf, verbose = v) >> >> 1: doCRMAv2(cel.subset, cdf = cdf, verbose = v) >> >> > sessionInfo() > > >> >> R version 3.1.0 (2014-04-10) >> >> Platform: x86_64-redhat-linux-gnu (64-bit) >> >> >> locale: >> >> [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C >> LC_TIME=en_US.iso885915LC_COLLATE=en_US.iso885915 >> LC_MONETARY=en_US.iso885915LC_MESSAGES=en_US.iso885915 >> LC_PAPER=en_US.iso885915 >> >> [8] LC_NAME=C LC_ADDRESS=C >> LC_TELEPHONE=C LC_MEASUREMENT=en_US.iso885915 >> LC_IDENTIFICATION=C >> >> >> attached base packages: >> >> [1] stats graphics grDevices utils datasets methods base >> >> >> other attached packages: >> >> [1] sfit_0.3.0 aroma.light_2.0.0 matrixStats_0.50.1 >> aroma.affymetrix_2.13.1 aroma.core_2.13.0 R.devices_2.14.0 >> R.filesets_2.6.0R.utils_2.2.0 R.oo_1.20.0 >> affxparser_1.36.0 >> >> [11] R.methodsS3_1.7.1 >> >> >> loaded via a namespace (and not attached): >> >> [1] aroma.apd_0.6.0 base64enc_0.1-4 digest_0.6.9DNAcopy_1.38.1 >> PSCBS_0.43.0R.cache_0.12.0 R.huge_0.9.0R.rsp_0.21.0 >> tools_3.1.0 >> >> > > On Thursday, March 24, 2016 at 12:22:36 PM UTC-7, Henrik Bengtsson wrote: >> >> Hi, in order for us to help you, could you please: >> >> "[...] make sure 1) to run the latest version of the package, 2) to >> report the output of sessionInfo() and traceback(), and 3) to post a >> complete code example." >> >> Thanks, >> >> Henrik >> >> On Thu, Mar 24, 2016 at 9:59 AM, C.C. wrote: >> > Hello, >> > >> > I was trying to run doCRMAv2.R in aroma.affymetrix 3.0 and get the >> > error. >> > Dose anyone know what is the problem? Thanks. >> > >> > >> > >> > Error: The fit function for requested AvgPlm flavor failed: median >> > >> > -- >> > -- >> > When reporting problems on aroma.affymetrix, make sure 1) to run the >> > latest >> > version of the package, 2) to report the output of sessionInfo() and >> > traceback(), and 3) to post a complete code example. >> > >> > >> > You received this message
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Hi, in order for us to help you, could you please: "[...] make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example." Thanks, Henrik On Thu, Mar 24, 2016 at 9:59 AM, C.C.wrote: > Hello, > > I was trying to run doCRMAv2.R in aroma.affymetrix 3.0 and get the error. > Dose anyone know what is the problem? Thanks. > > > > Error: The fit function for requested AvgPlm flavor failed: median > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.