I add this as a ticket. Can you specify the methods that you need  
acces to.

/Johan


17 aug 2007 kl. 16.18 skrev vegard nygaard:

>
>
> I want to export more than standard information in the base-file  
> sent to my
> plug-in. That is more "sections" describing the samples, hybs,  
> arrays and
> their relationships.  My first plan was to extend  
> BioAssaySetExporter and
> Base1PluginExecuter, and then override the methods where the  
> information is
> written to file (stdin.txt) adding my extra stuff. This approach  
> failed when
> I encountered lots of private methods in Base1PluginExecuter and
> BioAssaySetExporter, making them less useful for extension since I  
> have to
> override all the private parts I need even if I don't need to alter  
> them.
> Why are those methods private and not public? Is there a better way  
> to solve
> my problem?
>
> A more cumbersome approach is to copy both files (and others if  
> needed),
> rename them, do my modifications and it will work. This is what I  
> have done
> for years with BASE1, giving me an extra cut and paste job each  
> time base1
> was updated and I had to re-update my custom files. I hope BASE2  
> can do this
> in a more neat way.
>
> Best Regards
>
> Vegard Nygaard
> Software Engineer
> Department of Tumor Biology (Montebello)
> Rikshospitalet-Radiumhospitalet Medical Center 0310 Oslo
> Bioinformatics user support (NMC)
> Phone 0047 22935590
>
>
>
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